Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 2.6e-92 342.0 171 100.0
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.3e-88 329.7 172 97.1
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 8.3e-75 283.9 162 85.2
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.2e-73 280.0 146 95.2
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 2.9e-72 275.4 172 80.8
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 1.1e-71 273.5 161 82.0
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 3.3e-71 271.9 172 79.7
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 4.3e-71 271.6 156 84.0
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 5.6e-71 271.2 162 81.5
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 1.2e-70 270.0 180 78.3
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 2.1e-70 269.2 169 80.5
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 2.8e-70 268.9 177 76.3
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 3.6e-70 268.5 171 77.8
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.7e-70 268.1 162 80.9
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 4.7e-70 268.1 170 78.8
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 6.1e-70 267.7 174 78.2
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 6.1e-70 267.7 164 81.1
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 8.0e-70 267.3 162 80.2
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.4e-69 266.5 162 81.5
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.4e-69 266.5 167 78.4
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 1.8e-69 266.2 167 79.6
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.8e-69 266.2 162 79.6
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.8e-69 266.2 168 81.0
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.8e-69 266.2 163 80.4
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 2.3e-69 265.8 152 84.9
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 2.3e-69 265.8 170 75.9
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.3e-69 265.8 168 81.0
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.3e-69 265.8 175 77.7
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 2.3e-69 265.8 169 78.7
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 3.1e-69 265.4 168 81.0
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.1e-69 265.4 168 81.0
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.1e-69 265.4 168 81.0
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.1e-69 265.4 162 79.6
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 4.0e-69 265.0 157 82.2
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.0e-69 265.0 168 80.4
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.0e-69 265.0 168 80.4
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 4.0e-69 265.0 163 79.8
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 4.0e-69 265.0 153 84.3
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 5.2e-69 264.6 167 77.2
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 5.2e-69 264.6 171 77.2
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 6.8e-69 264.2 162 80.9
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 6.8e-69 264.2 171 77.2
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 6.8e-69 264.2 162 80.2
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 8.9e-69 263.8 166 78.3
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 8.9e-69 263.8 169 78.7
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 8.9e-69 263.8 167 80.2
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 1.2e-68 263.5 161 80.1
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 1.2e-68 263.5 166 78.3
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.2e-68 263.5 161 80.1
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 1.2e-68 263.5 175 76.6
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.2e-68 263.5 169 81.1
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.5e-68 263.1 167 79.0
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.5e-68 263.1 169 78.1
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.5e-68 263.1 164 79.9
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 1.5e-68 263.1 175 74.9
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.5e-68 263.1 172 77.9
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 1.5e-68 263.1 172 79.1
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.0e-68 262.7 170 77.1
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 2.0e-68 262.7 153 83.0
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 2.0e-68 262.7 169 78.1
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.6e-68 262.3 164 78.0
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 2.6e-68 262.3 166 77.7
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.6e-68 262.3 161 78.9
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.6e-68 262.3 168 79.8
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 2.6e-68 262.3 178 73.6
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 3.4e-68 261.9 167 78.4
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 3.4e-68 261.9 170 77.6
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 3.4e-68 261.9 153 83.0
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 3.4e-68 261.9 158 80.4
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 4.4e-68 261.5 175 76.0
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 5.8e-68 261.2 158 81.0
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 5.8e-68 261.2 166 77.1
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 5.8e-68 261.2 166 77.1
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 5.8e-68 261.2 175 76.0
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 7.5e-68 260.8 175 76.0
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 9.8e-68 260.4 170 76.5
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 9.8e-68 260.4 172 75.6
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 1.3e-67 260.0 170 75.3
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.7e-67 259.6 175 75.4
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.7e-67 259.6 162 78.4
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 2.2e-67 259.2 161 78.3
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 2.2e-67 259.2 161 78.9
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 2.9e-67 258.8 161 78.3
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 2.9e-67 258.8 167 77.2
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 3.7e-67 258.5 171 75.4
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.7e-67 258.5 176 73.3
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 3.7e-67 258.5 161 78.3
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 6.4e-67 257.7 153 82.4
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 6.4e-67 257.7 179 72.1
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 6.4e-67 257.7 151 81.5
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 6.4e-67 257.7 151 81.5
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 8.3e-67 257.3 171 74.9
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 8.3e-67 257.3 162 77.8
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 8.3e-67 257.3 162 77.8
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 1.1e-66 256.9 161 77.6
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.1e-66 256.9 162 77.8
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.1e-66 256.9 161 77.6
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.4e-66 256.5 164 79.3
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.9e-66 256.1 162 77.8
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 2.4e-66 255.8 161 77.0
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 2.4e-66 255.8 178 70.8
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 2.4e-66 255.8 178 70.8
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.4e-66 255.8 170 74.7
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.4e-66 255.8 151 81.5
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 3.2e-66 255.4 167 78.4
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 3.2e-66 255.4 175 74.9
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 4.1e-66 255.0 161 77.6
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 4.1e-66 255.0 161 77.6
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 4.1e-66 255.0 153 81.7
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 5.4e-66 254.6 156 78.8
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 5.4e-66 254.6 167 77.2
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 9.2e-66 253.8 159 77.4
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.2e-65 253.4 161 77.0
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.2e-65 253.4 175 74.3
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.2e-65 253.4 176 72.7
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 1.6e-65 253.1 165 77.0
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.6e-65 253.1 164 78.0
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 1.6e-65 253.1 167 76.6
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 2.0e-65 252.7 158 77.2
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 3.0e-64 248.8 148 82.4
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 3.9e-64 248.4 174 73.0
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 1.9e-63 246.1 165 73.9
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 2.5e-63 245.7 159 74.8
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 4.3e-63 245.0 159 74.8
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 7.3e-63 244.2 161 75.2
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 7.3e-63 244.2 161 75.2
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 7.3e-63 244.2 174 73.0
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 9.5e-63 243.8 159 74.2
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.2e-62 243.4 160 73.8
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 1.2e-62 243.4 159 74.2
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.6e-62 243.0 159 74.8
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 3.6e-62 241.9 165 72.7
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 4.7e-62 241.5 160 73.1
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 1.4e-61 240.0 161 72.0
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 4.0e-61 238.4 170 71.2
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 8.9e-61 237.3 226 58.4
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 9.8e-60 233.8 161 70.8
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 6.4e-59 231.1 171 65.5
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.5e-55 219.9 169 68.0
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 2.1e-54 216.1 128 82.0
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 6.2e-54 214.5 120 84.2
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 1.3e-51 206.8 157 62.4
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 2.7e-49 199.1 132 74.2
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 4.6e-49 198.4 161 63.4
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 1.5e-44 183.3 136 66.2
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 2.6e-44 182.6 111 77.5
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 6.4e-43 177.9 136 63.2
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 6.0e-41 171.4 136 60.3
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 6.6e-40 167.9 156 58.3
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 8.7e-40 167.5 135 60.0
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 7.3e-39 164.5 144 57.6
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 8.1e-38 161.0 108 78.7
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.2e-33 147.1 112 67.0
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.5e-31 140.2 161 52.8
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 4.8e-30 135.2 120 51.7
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 2.0e-28 129.8 90 75.6
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 2.0e-28 129.8 88 77.3
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 7.1e-26 121.3 99 60.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 1.3e-24 117.1 97 62.9
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.8e-24 116.7 105 61.9
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 7.4e-23 111.3 129 43.4
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.6e-23 110.9 139 41.7
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.6e-23 110.9 139 41.7
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.0e-20 103.2 72 68.1
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 2.6e-20 102.8 96 57.3
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 2.6e-20 102.8 56 80.4
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 1.0e-19 100.9 57 75.4
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.2e-19 99.8 164 34.8
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.1e-18 97.4 53 83.0
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 1.6e-17 93.6 63 71.4
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 1.3e-16 90.5 96 45.8
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 1.3e-16 90.5 96 45.8
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 4.8e-14 82.0 95 41.1
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.2e-12 77.4 55 67.3
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.8e-12 75.1 47 66.0
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 9.3e-10 67.8 95 42.1


User provided reference genes

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