Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 1.8e-96 355.9 180 100.0
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 3.4e-95 351.7 180 98.9
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 3.0e-75 285.4 179 79.3
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 7.4e-74 280.8 182 78.6
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.0e-70 270.4 176 76.1
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.3e-70 270.0 182 74.7
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 3.8e-70 268.5 180 72.2
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 3.8e-70 268.5 176 74.4
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 5.0e-70 268.1 170 77.6
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 5.0e-70 268.1 178 74.7
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 6.5e-70 267.7 170 76.5
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 8.5e-70 267.3 169 76.9
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 2.5e-69 265.8 178 73.0
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 2.5e-69 265.8 170 76.5
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 3.2e-69 265.4 179 75.4
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 3.2e-69 265.4 170 75.9
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.6e-68 263.1 174 74.7
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.6e-68 263.1 170 77.1
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 2.1e-68 262.7 170 75.3
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 7.9e-68 260.8 178 70.8
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.8e-67 259.6 160 79.4
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 3.9e-67 258.5 176 72.7
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 5.1e-67 258.1 178 70.8
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 5.1e-67 258.1 173 74.6
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 8.7e-67 257.3 175 72.0
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 8.7e-67 257.3 176 70.5
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.1e-66 256.9 181 71.8
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.9e-66 256.1 183 69.4
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.5e-66 255.8 177 72.3
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 3.3e-66 255.4 173 73.4
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 3.3e-66 255.4 166 75.9
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 3.3e-66 255.4 175 71.4
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 9.7e-66 253.8 171 73.7
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 3.7e-65 251.9 183 70.5
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 6.3e-65 251.1 169 73.4
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 4.1e-64 248.4 177 67.8
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 5.3e-64 248.1 176 71.0
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 6.9e-64 247.7 168 72.0
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 6.9e-64 247.7 205 62.9
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 6.9e-64 247.7 179 73.2
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 1.2e-63 246.9 206 65.0
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.5e-63 246.5 170 70.0
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.5e-63 246.5 178 71.3
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 2.0e-63 246.1 175 69.1
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.6e-63 245.7 194 66.0
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 3.4e-63 245.4 176 68.8
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 4.5e-63 245.0 169 70.4
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 5.9e-63 244.6 176 65.9
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.3e-62 243.4 165 72.1
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.3e-62 243.4 166 72.3
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.2e-62 242.7 182 70.9
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 2.2e-62 242.7 188 66.5
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 3.8e-62 241.9 165 70.9
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.9e-61 239.6 177 67.2
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 2.5e-61 239.2 177 68.4
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 3.2e-61 238.8 168 69.6
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 7.2e-61 237.7 177 66.1
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.6e-60 236.5 179 68.7
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.6e-60 236.5 179 68.7
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 2.1e-60 236.1 177 65.5
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 3.6e-60 235.3 183 67.2
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.6e-60 235.0 179 68.2
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.1e-60 234.6 179 67.6
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.8e-59 230.7 170 68.2
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 3.3e-58 228.8 166 68.7
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 5.7e-58 228.0 167 71.3
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.4e-56 222.6 172 66.9
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.5e-55 219.9 176 65.3
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.6e-55 219.2 169 65.7
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 1.0e-54 217.2 187 61.5
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.7e-54 216.5 163 67.5
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 6.5e-54 214.5 236 51.7
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 6.5e-54 214.5 136 77.9
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.2e-53 211.1 161 67.1
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 7.2e-53 211.1 190 61.1
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.4e-51 206.8 130 80.0
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 3.0e-51 205.7 167 62.3
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 8.8e-51 204.1 173 61.8
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 2.6e-50 202.6 140 72.9
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 9.7e-50 200.7 151 67.5
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.7e-49 199.9 171 56.7
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 2.8e-49 199.1 171 56.7
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 4.8e-49 198.4 174 55.7
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 2.4e-48 196.1 124 75.8
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.4e-48 196.1 171 57.3
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 3.1e-48 195.7 122 77.9
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 7.0e-48 194.5 121 77.7
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 4.5e-47 191.8 172 55.2
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.0e-46 190.7 157 56.1
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 2.5e-45 186.0 151 64.2
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 9.4e-45 184.1 180 53.3
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.1e-44 183.0 176 52.8
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 6.1e-44 181.4 172 54.1
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-43 180.3 109 79.8
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.8e-43 179.9 193 52.8
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.3e-43 179.5 172 54.1
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 3.0e-43 179.1 131 69.5
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 4.0e-43 178.7 172 52.9
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 5.2e-43 178.3 166 55.4
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 6.7e-43 177.9 183 52.5
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 2.0e-42 176.4 128 68.8
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.7e-41 173.3 184 52.2
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 2.2e-41 172.9 135 67.4
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 2.4e-40 169.5 184 51.6
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 4.1e-40 168.7 180 52.2
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 9.1e-40 167.5 172 50.6
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 9.1e-40 167.5 172 50.6
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.7e-39 166.0 172 52.3
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.0e-38 164.1 172 50.6
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 8.5e-38 161.0 121 66.1
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.5e-37 160.2 173 52.0
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 3.2e-37 159.1 173 50.9
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.4e-35 153.7 135 58.5
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 8.8e-35 151.0 157 53.5
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 3.7e-33 145.6 125 63.2
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 3.5e-31 139.0 173 44.5
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.8e-30 135.6 173 43.4
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.8e-30 135.6 124 60.5
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 6.5e-30 134.8 121 57.0
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.5e-29 133.7 183 42.1
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 7.2e-29 131.3 118 56.8
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.2e-28 130.6 145 49.7
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.6e-28 129.0 181 40.9
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 6.1e-28 128.3 168 42.3
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 1.8e-27 126.7 171 43.3
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 2.3e-27 126.3 171 43.3
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.3e-27 126.3 174 42.5
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 3.0e-27 125.9 171 43.3
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 5.2e-27 125.2 186 39.8
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 6.8e-27 124.8 174 40.2
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 2.0e-26 123.2 137 48.2
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 6.3e-25 118.2 83 73.5
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 2.5e-21 106.3 169 33.1
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 6.1e-20 101.7 163 38.0
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 8.0e-20 101.3 131 45.8
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.5e-18 97.1 168 35.1
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 2.6e-18 96.3 60 76.7
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.3e-17 94.0 53 84.9
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 2.9e-17 92.8 73 67.1
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 4.9e-17 92.0 128 45.3
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 8.3e-17 91.3 51 84.3
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.4e-16 90.5 53 81.1
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.7e-15 86.3 53 77.4
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 8.6e-14 81.3 89 47.2
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 2.8e-12 76.3 41 87.8
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 3.6e-12 75.9 175 32.6
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 4.0e-11 72.4 87 47.1
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 2.2e-09 66.6 73 46.6
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 2.0e-07 60.1 46 60.9


User provided reference genes

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