Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G3301 Papaver somniferum HOM05D000482 ORTHO05D000349 2.3e-104 382.1 179 100.0
PSO478G3562 Papaver somniferum HOM05D000482 ORTHO05D000349 2.2e-14 83.2 53 71.7
Hund04232 Selenicereus undatus HOM05D000482 ORTHO05D000349 8.5e-14 81.3 69 56.5
PSO017G2273 Papaver somniferum HOM05D000482 ORTHO05D000349 1.9e-13 80.1 53 69.8
Manes.11G087100 Manihot esculenta HOM05D000482 ORTHO05D000349 2.5e-13 79.7 53 67.9
Hma1.2p1_0525F.1_g172550 Hydrangea macrophylla HOM05D000482 ORTHO05D000349 3.2e-13 79.3 53 67.9
Ciclev10014497m.g Citrus clementina HOM05D000482 ORTHO05D000349 4.2e-13 79.0 53 67.9
Phvul.001G088900 Phaseolus vulgaris HOM05D000482 ORTHO05D000349 4.2e-13 79.0 53 67.9
QL02p070873 Quercus lobata HOM05D000482 ORTHO05D000349 4.2e-13 79.0 53 67.9
VMungo1383G0053 Vigna mungo HOM05D000482 ORTHO05D000349 4.2e-13 79.0 53 67.9
Ah.02g119880 Amaranthus hybridus HOM05D000482 ORTHO05D000349 5.5e-13 78.6 53 66.0
BcaB04g20628 Brassica carinata HOM05D000482 ORTHO05D000349 5.5e-13 78.6 53 66.0
BcaC04g23913 Brassica carinata HOM05D000482 ORTHO05D000349 5.5e-13 78.6 53 66.0
A09p03250 Brassica napus HOM05D000482 ORTHO05D000349 5.5e-13 78.6 53 66.0
C09p03450 Brassica napus HOM05D000482 ORTHO05D000349 5.5e-13 78.6 53 66.0
BolC9t53266H Brassica oleracea HOM05D000482 ORTHO05D000349 5.5e-13 78.6 53 66.0
BraA09t35963Z Brassica rapa HOM05D000482 ORTHO05D000349 5.5e-13 78.6 53 66.0
Thhalv10003758m.g Eutrema salsugineum HOM05D000482 ORTHO05D000349 5.5e-13 78.6 53 66.0
Glyma.16G054200 Glycine max HOM05D000482 ORTHO05D000349 5.5e-13 78.6 53 66.0
Glyma.19G094800 Glycine max HOM05D000482 ORTHO05D000349 5.5e-13 78.6 53 66.0
Sp2g16140 Schrenkiella parvula HOM05D000482 ORTHO05D000349 5.5e-13 78.6 53 66.0
ClCG05G013710 Citrullus lanatus HOM05D000482 ORTHO05D000349 7.2e-13 78.2 53 66.0
MELO3C014900.2 Cucumis melo HOM05D000482 ORTHO05D000349 7.2e-13 78.2 53 66.0
CsaV3_3G026880 Cucumis sativus L. HOM05D000482 ORTHO05D000349 7.2e-13 78.2 53 66.0
Lj1g0010827 Lotus japonicus HOM05D000482 ORTHO05D000349 7.2e-13 78.2 103 41.7
Lalb_Chr00c01g0403791 Lupinus albus HOM05D000482 ORTHO05D000349 7.2e-13 78.2 53 64.2
Sed0003973 Sechium edule HOM05D000482 ORTHO05D000349 7.2e-13 78.2 53 66.0
GSVIVG01033058001 Vitis vinifera HOM05D000482 ORTHO05D000349 7.2e-13 78.2 120 40.8
Medtr7g028250 Medicago truncatula HOM05D000482 ORTHO05D000349 9.4e-13 77.8 53 66.0
TAR374G0090 Trochodendron aralioides HOM05D000482 ORTHO05D000349 9.4e-13 77.8 53 67.9
AT5G41000 Arabidopsis thaliana HOM05D000482 ORTHO05D000349 1.2e-12 77.4 53 64.2
EL10Ac6g15437 Beta vulgaris HOM05D000482 ORTHO05D000349 1.2e-12 77.4 53 66.0
Carub.0007s3449 Capsella rubella HOM05D000482 ORTHO05D000349 1.2e-12 77.4 53 64.2
Cpa.g.sc70.119 Carica papaya HOM05D000482 ORTHO05D000349 1.2e-12 77.4 53 66.0
CiPaw.04G039300 Carya illinoinensis HOM05D000482 ORTHO05D000349 1.2e-12 77.4 53 66.0
Ca_26663_v3 Cicer arietinum L. HOM05D000482 ORTHO05D000349 1.2e-12 77.4 53 66.0
Cc09_g05220 Coffea canephora HOM05D000482 ORTHO05D000349 1.2e-12 77.4 53 64.2
PGR142G0589 Punica granatum HOM05D000482 ORTHO05D000349 1.2e-12 77.4 53 66.0
A04p15820 Brassica napus HOM05D000482 ORTHO05D000349 1.6e-12 77.0 53 64.2
C04p50220 Brassica napus HOM05D000482 ORTHO05D000349 1.6e-12 77.0 53 64.2
BolC4t26622H Brassica oleracea HOM05D000482 ORTHO05D000349 1.6e-12 77.0 53 64.2
BraA04t17214Z Brassica rapa HOM05D000482 ORTHO05D006943 1.6e-12 77.0 53 66.0
CARHR213380 Cardamine hirsuta HOM05D000482 ORTHO05D000349 1.6e-12 77.0 53 64.2
AUR62003421 Chenopodium quinoa HOM05D000482 ORTHO05D000349 1.6e-12 77.0 53 64.2
AUR62029420 Chenopodium quinoa HOM05D000482 ORTHO05D000349 1.6e-12 77.0 53 64.2
Dinv25647 Davidia involucrata HOM05D000482 ORTHO05D000349 1.6e-12 77.0 53 66.0
Psat3g162840 Pisum sativum HOM05D000482 ORTHO05D000349 1.6e-12 77.0 53 64.2
Sed0000748 Sechium edule HOM05D000482 ORTHO05D000349 1.6e-12 77.0 53 66.0
THA.LOC104811089 Tarenaya hassleriana HOM05D000482 ORTHO05D000349 1.6e-12 77.0 53 64.2
vmacro05973 Vaccinium macrocarpon HOM05D000482 ORTHO05D000349 1.6e-12 77.0 53 67.9
Atru.chr6.2595 Acer truncatum HOM05D000482 ORTHO05D000349 2.1e-12 76.6 53 66.0
Cfa007208 Carpinus fangiana HOM05D000482 ORTHO05D000349 2.1e-12 76.6 53 66.0
Sabra16G0209600 Salix brachista HOM05D000482 ORTHO05D000349 2.1e-12 76.6 53 66.0
Sc03g0006350 Simmondsia chinensis HOM05D000482 ORTHO05D000349 2.1e-12 76.6 53 62.3
AL5G16050 Arabidopsis lyrata HOM05D000482 ORTHO05D000349 2.7e-12 76.3 53 64.2
AT3G27020 Arabidopsis thaliana HOM05D000482 ORTHO05D000349 2.7e-12 76.3 53 64.2
arahy.Tifrunner.gnm1.ann1.L877Z8 Arachis hypogaea HOM05D000482 ORTHO05D000349 2.7e-12 76.3 53 64.2
Carub.0005s0521 Capsella rubella HOM05D000482 ORTHO05D000349 2.7e-12 76.3 53 64.2
ECA246G1262 Erigeron canadensis HOM05D000482 ORTHO05D000349 2.7e-12 76.3 53 66.0
Thhalv10027673m.g Eutrema salsugineum HOM05D000482 ORTHO05D000349 2.7e-12 76.3 53 64.2
Potri.001G327300 Populus trichocarpa HOM05D000482 ORTHO05D000349 2.7e-12 76.3 53 66.0
BcaB06g27762 Brassica carinata HOM05D000482 ORTHO05D000349 3.6e-12 75.9 120 40.0
Cc03_g09250 Coffea canephora HOM05D000482 ORTHO05D000349 3.6e-12 75.9 57 57.9
DCAR_000954 Daucus carota HOM05D000482 ORTHO05D000349 3.6e-12 75.9 112 36.6
Eucgr.I01628 Eucalyptus grandis HOM05D000482 ORTHO05D000349 3.6e-12 75.9 53 66.0
Lsat_1_v5_gn_4_184861 Lactuca sativa HOM05D000482 ORTHO05D000349 3.6e-12 75.9 53 66.0
Rhsim10G0004800 Rhododendron simsii HOM05D000482 ORTHO05D000349 3.6e-12 75.9 53 66.0
SGA_v2.0_scaffold253G45182 Striga asiatica HOM05D000482 ORTHO05D000349 3.6e-12 75.9 53 66.0
Thecc.04G040200 Theobroma cacao HOM05D000482 ORTHO05D000349 3.6e-12 75.9 53 64.2
Haze_14897 Corylus avellana HOM05D000482 ORTHO05D000349 4.7e-12 75.5 53 64.2
SalBow4G2496 Salvia bowleyana HOM05D000482 ORTHO05D000349 4.7e-12 75.5 105 39.0
THA.LOC104825632 Tarenaya hassleriana HOM05D000482 ORTHO05D000349 4.7e-12 75.5 53 62.3
TAR622G1293 Trochodendron aralioides HOM05D000482 ORTHO05D000349 4.7e-12 75.5 53 66.0
Aa31LG2G5570 Aethionema arabicum HOM05D000482 ORTHO05D000349 6.1e-12 75.1 53 62.3
COL.COLO4_13291 Corchorus olitorius HOM05D000482 ORTHO05D000349 6.1e-12 75.1 53 62.3
Dinv33323 Davidia involucrata HOM05D000482 ORTHO05D000349 6.1e-12 75.1 53 64.2
HanXRQChr17g0551541 Helianthus annuus HOM05D000482 ORTHO05D000349 6.1e-12 75.1 53 64.2
AL7G48544 Arabidopsis lyrata HOM05D000482 ORTHO05D000349 8.0e-12 74.7 95 43.2
arahy.Tifrunner.gnm1.ann1.WJ50T5 Arachis hypogaea HOM05D000482 ORTHO05D000349 8.0e-12 74.7 53 62.3
CANSAT64G0268 Cannabis sativa HOM05D000482 ORTHO05D000349 1.4e-11 73.9 53 62.3
CARHR148210 Cardamine hirsuta HOM05D000482 ORTHO05D000349 1.4e-11 73.9 53 62.3
CDE05G0377 Ceratophyllum demersum HOM05D000482 ORTHO05D000349 1.4e-11 73.9 53 62.3
CDE05G0846 Ceratophyllum demersum HOM05D000482 ORTHO05D000349 1.4e-11 73.9 53 62.3
Migut.F00048 Erythranthe guttata HOM05D000482 ORTHO05D000349 1.4e-11 73.9 104 43.3
Gohir.A10G071400 Gossypium hirsutum HOM05D000482 ORTHO05D000349 1.4e-11 73.9 53 62.3
Gohir.D10G079600 Gossypium hirsutum HOM05D000482 ORTHO05D000349 1.4e-11 73.9 53 62.3
Gorai.011G086700 Gossypium raimondii HOM05D000482 ORTHO05D000349 1.4e-11 73.9 53 62.3
Nn4g22251 Nelumbo nucifera HOM05D000482 ORTHO05D000349 1.4e-11 73.9 53 64.2
RcHm_v2.0_Chr2g0175951 Rosa chinensis HOM05D000482 ORTHO05D000349 1.4e-11 73.9 53 64.2
RcHm_v2.0_Chr4g0404811 Rosa chinensis HOM05D000482 ORTHO05D000349 1.4e-11 73.9 53 64.2
RcHm_v2.0_Chr6g0247711 Rosa chinensis HOM05D000482 ORTHO05D000349 1.4e-11 73.9 53 64.2
Sp7g00910 Schrenkiella parvula HOM05D000482 ORTHO05D000349 1.4e-11 73.9 53 62.3
CSS0026851 Camellia sinensis var. sinensis HOM05D000482 ORTHO05D000349 1.8e-11 73.6 53 62.3
HanXRQChr09g0256431 Helianthus annuus HOM05D000482 ORTHO05D000349 1.8e-11 73.6 80 47.5
Ciclev10027961m.g Citrus clementina HOM05D000482 ORTHO05D000349 2.3e-11 73.2 53 62.3
Os04g0390500 Oryza sativa ssp. japonica HOM05D000482 ORTHO05D000349 2.3e-11 73.2 53 62.3
Aa31LG1G13570 Aethionema arabicum HOM05D000482 ORTHO05D000349 3.0e-11 72.8 103 38.8
Duzib147G1244 Durio zibethinus HOM05D000482 ORTHO05D000349 3.0e-11 72.8 53 60.4
Duzib187G0763 Durio zibethinus HOM05D000482 ORTHO05D000349 3.0e-11 72.8 53 60.4
RcHm_v2.0_Chr7g0225381 Rosa chinensis HOM05D000482 ORTHO05D000349 3.0e-11 72.8 53 62.3
CiPaw.03G058000 Carya illinoinensis HOM05D000482 ORTHO05D000349 4.0e-11 72.4 53 62.3
FAN02G0345 Fragaria x ananassa HOM05D000482 ORTHO05D000349 4.0e-11 72.4 53 62.3
FAN05G5561 Fragaria x ananassa HOM05D000482 ORTHO05D000349 4.0e-11 72.4 53 62.3
Prupe.3G308600 Prunus persica HOM05D000482 ORTHO05D000349 4.0e-11 72.4 53 62.3
Aqoxy3G01625 Aquilegia oxysepala HOM05D000482 ORTHO05D000349 5.2e-11 72.0 107 43.0
DCAR_014496 Daucus carota HOM05D000482 ORTHO05D000349 5.2e-11 72.0 53 58.5
Peaxi162Scf00420g00646 Petunia axillaris HOM05D000482 ORTHO05D000349 5.2e-11 72.0 53 62.3
Zm00001eb085320 Zea mays HOM05D000482 ORTHO05D000349 5.2e-11 72.0 120 40.0
Nitab4.5_0000519g0030 Nicotiana tabacum HOM05D000482 ORTHO05D000349 6.8e-11 71.6 116 35.3
SEGI_41020 Sequoiadendron giganteum HOM05D000482 ORTHO05D000349 6.8e-11 71.6 53 62.3
MSTRG.3065 Avicennia marina HOM05D000482 ORTHO05D000349 8.8e-11 71.2 53 62.3
FvH4_6g53820 Fragaria vesca HOM05D000482 ORTHO05D000349 8.8e-11 71.2 120 39.2
FAN14G4535 Fragaria x ananassa HOM05D000482 ORTHO05D000349 8.8e-11 71.2 120 39.2
Actinidia05890 Actinidia chinensis HOM05D000482 ORTHO05D000349 1.2e-10 70.9 53 60.4
Oeu035241.1 Olea europaea HOM05D000482 ORTHO05D000349 1.2e-10 70.9 53 64.2
ATR0582G261 Amborella trichopoda HOM05D000482 ORTHO05D000349 2.0e-10 70.1 53 60.4
Lj7C611G9 Lonicera japonica HOM05D000482 ORTHO05D000349 2.0e-10 70.1 53 62.3
unitig_748.g7059 Utricularia gibba HOM05D000482 ORTHO05D000349 2.0e-10 70.1 53 60.4
MBI11_g24607_MAGBIO Magnolia biondii HOM05D000482 ORTHO05D000349 2.6e-10 69.7 53 60.4
Solyc02g094280.4 Solanum lycopersicum HOM05D000482 ORTHO05D000349 2.6e-10 69.7 53 60.4
Sopen02g038920 Solanum pennellii HOM05D000482 ORTHO05D000349 2.6e-10 69.7 53 60.4
PGSC0003DMG400020248 Solanum tuberosum HOM05D000482 ORTHO05D000349 2.6e-10 69.7 53 60.4
Nitab4.5_0007375g0070 Nicotiana tabacum HOM05D000482 ORTHO05D000349 3.4e-10 69.3 53 60.4
TWI60G1047 Tripterygium wilfordii HOM05D000482 ORTHO05D000349 3.4e-10 69.3 53 60.4
MD09G1008400 Malus domestica HOM05D000482 ORTHO05D000349 4.4e-10 68.9 53 60.4
ATR0582G299 Amborella trichopoda HOM05D000482 ORTHO05D000349 5.7e-10 68.6 53 58.5
CSS0018457 Camellia sinensis var. sinensis HOM05D000482 ORTHO05D000349 7.5e-10 68.2 71 52.1
ATR0582G324 Amborella trichopoda HOM05D000482 ORTHO05D000349 3.7e-09 65.9 53 54.7
MD17G1002400 Malus domestica HOM05D000482 ORTHO05D000349 3.7e-09 65.9 53 56.6
ECA232G2032 Erigeron canadensis HOM05D000482 ORTHO05D000349 4.9e-09 65.5 53 58.5
Os04g0390600 Oryza sativa ssp. japonica HOM05D000482 ORTHO05D000349 4.9e-09 65.5 41 65.9
Zm00001eb085310 Zea mays HOM05D000482 ORTHO05D000349 8.3e-09 64.7 53 54.7
AagrBONN_evm.TU.Sc2ySwM_228.4652 Anthoceros agrestis HOM05D000482 ORTHO05D000349 1.8e-08 63.5 41 63.4
HanXRQChr15g0486981 Helianthus annuus HOM05D000482 ORTHO05D000349 1.8e-08 63.5 53 54.7
Mapoly0011s0052 Marchantia polymorpha HOM05D000482 ORTHO05D000349 7.0e-08 61.6 41 58.5
AagrBONN_evm.TU.Sc2ySwM_228.4651 Anthoceros agrestis HOM05D000482 ORTHO05D000349 9.1e-08 61.2 41 61.0
Actinidia36215 Actinidia chinensis HOM05D000482 ORTHO05D000349 1.6e-07 60.5 29 82.8
SEGI_27766 Sequoiadendron giganteum HOM05D000482 ORTHO05D000349 1.0e-06 57.8 41 51.2
Thecc.05G197600 Theobroma cacao HOM05D000482 ORTHO05D000349 1.7e-06 57.0 56 46.4
PSO729G0015 Papaver somniferum HOM05D000482 ORTHO05D000349 5.0e-06 55.5 41 51.2
Potri.004G069200 Populus trichocarpa HOM05D000482 ORTHO05D000349 5.0e-06 55.5 56 44.6
Sabra17G0125300 Salix brachista HOM05D000482 ORTHO05D000349 5.0e-06 55.5 56 46.4
GSVIVG01029329001 Vitis vinifera HOM05D000482 ORTHO05D000349 5.0e-06 55.5 41 51.2
Os02g0650300 Oryza sativa ssp. japonica HOM05D000482 ORTHO05D000349 6.6e-06 55.1 79 38.0
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 6.6e-06 55.1 38 71.1
Sabra17G0125200 Salix brachista HOM05D000482 ORTHO05D000349 6.6e-06 55.1 56 44.6
GSVIVG01029331001 Vitis vinifera HOM05D000482 ORTHO05D000349 6.6e-06 55.1 56 44.6
GSVIVG01029349001 Vitis vinifera HOM05D000482 ORTHO05D000349 6.6e-06 55.1 41 51.2


User provided reference genes

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