Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 0.0e+00 1176.4 639 100.0
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 0.0e+00 1127.5 639 96.1
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 5.2e-138 495.7 646 50.3
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 3.3e-124 449.9 654 49.4
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 2.4e-119 433.7 603 48.6
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 4.4e-113 412.9 642 44.7
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 4.9e-112 409.5 639 45.7
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 5.6e-108 396.0 640 47.5
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 5.8e-105 386.0 648 43.2
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 7.6e-105 385.6 639 42.7
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 6.4e-104 382.5 635 44.3
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 2.1e-102 377.5 639 42.4
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 5.1e-101 372.9 643 41.7
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 2.1e-99 367.5 635 42.0
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 1.1e-98 365.2 641 43.2
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 1.4e-98 364.8 641 43.4
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 1.2e-97 361.7 650 41.4
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 3.8e-96 356.7 689 39.2
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.9e-95 354.4 689 38.9
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 2.1e-94 350.9 641 42.6
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 4.6e-94 349.7 646 41.6
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.7e-93 347.8 689 38.3
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 5.1e-93 346.3 641 41.2
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 8.7e-93 345.5 647 42.7
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 7.3e-92 342.4 645 42.0
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 4.8e-91 339.7 720 36.7
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 4.8e-91 339.7 640 40.3
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.4e-90 337.4 708 38.3
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 2.4e-90 337.4 644 39.8
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 9.0e-90 335.5 646 40.9
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 1.2e-89 335.1 569 41.5
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 7.6e-89 332.4 670 39.6
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 9.9e-89 332.0 636 40.4
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.3e-88 331.6 639 40.4
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.1e-87 328.6 638 40.8
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 3.2e-87 327.0 628 39.6
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 4.2e-87 326.6 642 40.3
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 1.2e-86 325.1 620 41.0
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 5.1e-85 319.7 591 40.9
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 9.6e-84 315.5 640 39.7
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.4e-82 311.6 640 39.1
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 6.9e-82 309.3 640 39.1
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 5.8e-81 306.2 652 38.7
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 5.8e-81 306.2 635 39.5
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 1.7e-80 304.7 753 35.7
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 4.9e-80 303.1 594 42.3
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.1e-79 302.0 581 39.8
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 5.5e-79 299.7 639 38.3
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 9.3e-79 298.9 537 43.2
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 1.2e-78 298.5 559 39.9
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 2.7e-78 297.4 630 38.6
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 3.5e-78 297.0 637 38.8
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 7.9e-78 295.8 643 37.5
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.3e-77 295.0 637 39.4
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 2.3e-77 294.3 635 38.4
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 2.3e-77 294.3 665 37.1
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 3.9e-77 293.5 637 38.3
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 3.9e-77 293.5 637 40.2
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 6.7e-77 292.7 673 36.3
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 6.7e-77 292.7 621 37.7
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.9e-76 291.2 646 37.9
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 4.3e-76 290.0 659 39.8
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 7.4e-76 289.3 638 37.6
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 4.8e-75 286.6 640 37.8
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 6.2e-75 286.2 639 37.1
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 6.2e-75 286.2 637 36.9
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 8.2e-75 285.8 643 37.0
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 2.4e-74 284.3 647 36.9
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 1.7e-72 278.1 634 36.4
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 2.9e-72 277.3 620 39.5
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 1.4e-71 275.0 642 36.8
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 2.5e-71 274.2 612 37.7
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 3.2e-71 273.9 666 34.5
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 7.1e-71 272.7 643 37.5
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 9.3e-71 272.3 638 36.5
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 8.7e-69 265.8 565 40.5
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.5e-68 265.0 623 38.2
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 2.5e-68 264.2 649 35.0
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 4.3e-68 263.5 604 37.9
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 2.8e-67 260.8 510 41.6
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 4.8e-67 260.0 643 34.5
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 5.3e-66 256.5 594 38.4
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 1.5e-65 255.0 523 39.4
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 2.0e-65 254.6 649 34.5
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 2.6e-65 254.2 645 34.9
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 7.6e-65 252.7 635 34.2
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 1.0e-64 252.3 565 36.8
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.3e-64 251.9 480 40.8
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 8.5e-64 249.2 564 36.5
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 8.5e-64 249.2 572 34.6
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.4e-63 248.4 561 35.7
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 2.5e-63 247.7 638 36.1
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 1.8e-61 241.5 571 34.3
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 5.1e-61 240.0 453 39.5
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 9.7e-60 235.7 565 36.1
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 2.8e-59 234.2 541 35.7
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.4e-58 231.9 537 38.9
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 2.4e-58 231.1 713 32.0
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 5.9e-57 226.5 585 35.9
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 8.5e-56 222.6 576 33.3
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 3.2e-55 220.7 571 33.5
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 4.2e-55 220.3 568 33.8
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 7.2e-55 219.5 717 31.4
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 9.4e-55 219.2 637 33.1
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 1.4e-53 215.3 589 32.8
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 2.3e-53 214.5 561 33.5
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 8.8e-53 212.6 592 33.4
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 1.1e-52 212.2 657 32.0
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 5.7e-52 209.9 642 32.9
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 9.7e-52 209.1 564 32.1
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 1.3e-51 208.8 742 30.1
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 8.2e-51 206.1 642 32.2
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 3.1e-50 204.1 414 37.9
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 1.5e-49 201.8 561 31.4
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.5e-49 201.8 601 31.9
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 1.5e-49 201.8 564 31.9
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 3.4e-49 200.7 555 31.5
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 3.4e-49 200.7 548 31.4
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 2.2e-48 198.0 662 31.4
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 5.5e-47 193.4 555 32.1
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 4.7e-46 190.3 660 32.0
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 2.3e-45 188.0 669 30.9
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 3.0e-45 187.6 637 30.3
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 6.7e-45 186.4 391 38.6
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 1.3e-43 182.2 555 31.4
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.7e-43 181.8 502 33.5
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 2.8e-43 181.0 550 31.8
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 1.1e-42 179.1 560 31.4
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 1.1e-42 179.1 468 36.8
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 3.1e-42 177.6 564 29.8
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 2.6e-41 174.5 526 31.9
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 3.5e-41 174.1 561 30.7
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 7.7e-41 172.9 422 34.8
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 1.0e-40 172.6 321 41.1
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 1.7e-40 171.8 540 30.7
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 2.9e-40 171.0 592 30.2
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 5.0e-40 170.2 515 31.5
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 5.0e-40 170.2 659 29.7
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 6.5e-40 169.9 671 30.3
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 8.5e-40 169.5 535 30.5
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 1.6e-38 165.2 424 33.3
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.0e-37 162.5 574 30.0
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 2.0e-36 158.3 296 40.9
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 4.4e-36 157.1 548 31.0
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 1.3e-35 155.6 548 30.7
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 8.2e-35 152.9 567 31.9
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 2.4e-34 151.4 371 36.7
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 1.7e-32 145.2 409 32.8
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 2.9e-32 144.4 316 38.6
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 2.5e-31 141.4 396 32.8
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 5.5e-31 140.2 413 33.7
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 4.7e-30 137.1 393 31.0
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 2.0e-28 131.7 235 42.6
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 2.8e-27 127.9 552 29.3
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 3.7e-27 127.5 262 39.7
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 3.7e-27 127.5 427 30.9
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 6.3e-27 126.7 392 30.1
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 9.1e-26 122.9 515 29.3
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.2e-25 122.5 319 38.2
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 1.6e-25 122.1 278 37.1
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 2.0e-25 121.7 397 30.5
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 4.5e-25 120.6 476 30.5
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 6.5e-24 116.7 253 36.4
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 3.3e-23 114.4 290 35.9
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 3.3e-23 114.4 274 36.1
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 4.2e-23 114.0 258 36.4
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 7.2e-23 113.2 415 33.7
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 1.2e-22 112.5 317 33.8
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 3.6e-22 110.9 322 31.4
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 6.1e-22 110.2 411 34.1
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 6.8e-21 106.7 239 36.8
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 1.2e-20 105.9 284 34.5
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 5.7e-20 103.6 254 34.6
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 2.2e-19 101.7 417 27.8
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.1e-18 97.8 283 31.8
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 5.4e-18 97.1 237 37.1
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 3.5e-17 94.4 239 33.9
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 1.9e-15 88.6 248 34.7
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 1.9e-15 88.6 228 32.0
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 3.3e-15 87.8 263 31.2
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 8.0e-14 83.2 108 49.1
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.3e-11 75.9 223 33.6
TAR265G0001 Trochodendron aralioides HOM05D003672 ORTHO05D004121 2.2e-11 75.1 148 41.9
MSTRG.7745 Avicennia marina HOM05D003672 ORTHO05D004121 2.5e-07 61.6 75 49.3


User provided reference genes

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