Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1929.8 965 100.0
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1624.4 968 84.3
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1222.2 948 66.4
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1206.0 943 65.9
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1186.4 954 65.0
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1156.7 986 60.5
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1154.0 1027 59.2
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1151.3 1028 59.3
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1149.8 1028 59.2
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1148.7 943 62.0
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1140.2 944 62.0
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1138.6 941 62.5
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1135.6 939 61.4
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1134.4 974 61.1
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1133.2 954 61.4
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1129.4 971 60.5
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1129.0 940 61.6
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1128.6 941 61.8
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1127.1 943 62.2
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1124.4 939 60.7
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1122.8 957 61.0
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1121.3 938 61.4
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1119.8 992 59.5
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1116.3 947 62.2
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1116.3 947 62.2
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1115.5 931 61.4
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1114.4 930 61.6
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1112.8 936 61.4
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1111.7 947 60.9
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1110.9 942 61.4
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1110.5 940 61.3
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1110.5 953 60.7
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1109.7 934 60.6
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1109.4 968 60.6
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1109.4 947 60.8
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1107.8 942 60.0
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1107.8 936 61.4
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1105.9 948 61.1
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1104.4 954 59.6
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1090.5 939 59.6
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1088.6 952 59.1
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1084.3 926 60.9
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1083.9 966 59.3
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1083.2 938 58.8
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1082.4 961 59.8
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1080.1 953 58.9
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1080.1 949 58.7
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1079.7 929 60.6
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1078.9 958 59.1
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1078.5 965 58.9
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1077.8 933 58.7
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1077.4 949 58.6
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 6.6e-312 1073.9 964 58.7
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 6.6e-312 1073.9 999 57.4
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 6.6e-312 1073.9 962 57.4
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 1.3e-311 1072.8 958 58.2
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 2.6e-311 1072.0 1031 54.8
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 1.7e-310 1069.3 943 58.5
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 1.7e-310 1069.3 943 58.5
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 1.5e-309 1066.2 932 59.3
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 3.2e-309 1065.1 933 59.5
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 4.2e-309 1064.7 926 59.2
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 4.2e-309 1064.7 980 57.8
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 5.2e-307 1057.7 951 57.6
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 5.2e-307 1057.7 930 58.8
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 8.8e-307 1057.0 938 59.2
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 1.5e-306 1056.2 948 56.8
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 1.5e-306 1056.2 939 57.8
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 2.8e-305 1052.0 960 57.4
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 3.7e-305 1051.6 957 57.3
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 3.1e-304 1048.5 937 57.7
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 3.1e-304 1048.5 943 59.0
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 4.1e-304 1048.1 942 58.9
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 5.3e-304 1047.7 937 58.9
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 5.3e-304 1047.7 935 56.8
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.2e-303 1046.6 951 56.7
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 6.5e-302 1040.8 1003 55.6
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 1.5e-301 1039.6 920 59.1
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 4.2e-301 1038.1 941 58.2
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 7.2e-301 1037.3 938 58.3
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 7.2e-301 1037.3 938 58.3
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 2.1e-300 1035.8 961 56.5
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 4.7e-300 1034.6 931 59.1
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.3e-299 1032.3 868 61.4
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 3.0e-299 1031.9 951 56.8
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.2e-298 1030.0 949 57.5
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 3.4e-298 1028.5 967 56.5
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 2.2e-297 1025.8 954 55.8
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.6e-295 1019.6 946 57.9
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.0e-294 1016.9 906 59.3
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 2.1e-292 1009.2 996 55.2
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 2.8e-292 1008.8 1018 54.3
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 3.6e-292 1008.4 945 56.7
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 6.1e-292 1007.7 1071 52.9
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 4.0e-291 1005.0 894 58.2
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.0e-290 1002.7 1045 52.4
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 5.7e-290 1001.1 1047 52.7
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 4.9e-289 998.0 1069 51.4
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 6.3e-289 997.7 953 55.6
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 2.3e-286 989.2 948 56.8
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.9e-285 986.1 970 54.4
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 9.8e-282 973.8 870 61.4
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 9.8e-282 973.8 939 54.4
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 1.7e-278 963.0 872 57.8
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 1.5e-277 959.9 835 59.9
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.5e-277 959.9 947 54.0
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 1.7e-273 946.4 1204 46.5
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.1e-272 943.7 987 52.6
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 3.5e-271 938.7 980 52.6
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.3e-270 936.0 896 56.2
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 1.3e-265 920.2 818 60.3
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.1e-251 874.0 928 51.9
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 9.3e-248 860.9 986 48.9
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.4e-243 847.0 778 58.1
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 3.2e-240 835.9 958 48.6
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 1.6e-239 833.6 862 51.6
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 5.6e-237 825.1 875 50.9
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 8.1e-236 821.2 1088 43.7
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.9e-232 810.1 770 55.3
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.4e-226 789.3 701 61.1
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 4.1e-211 739.2 731 54.3
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.5e-192 676.8 651 56.4
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 5.5e-192 675.6 692 55.8
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 7.2e-184 648.7 683 52.3
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.4e-179 633.6 407 74.7
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 1.2e-170 604.7 768 47.5
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.2e-151 539.3 353 73.7
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.4e-148 529.3 399 66.4
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 5.4e-147 526.2 386 68.7
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.2e-130 471.9 479 55.7
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.0e-121 440.7 329 66.9
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.5e-120 438.3 557 46.0
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 5.3e-118 429.9 634 44.2
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.7e-116 424.9 725 39.9
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 6.7e-113 412.9 279 71.0
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 2.1e-111 407.9 284 68.3
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 1.1e-104 385.6 349 55.9
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.2e-101 375.6 494 48.4
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 4.1e-94 350.5 273 61.2
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 6.5e-84 316.6 205 71.7
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.1e-58 231.9 115 100.0
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.5e-56 225.7 162 69.8
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 5.6e-51 207.2 215 53.5
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.8e-48 197.2 139 64.7
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 1.4e-46 192.6 120 75.0
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 7.1e-38 163.7 124 64.5
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 3.0e-36 158.3 130 60.0
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 8.9e-33 146.7 117 64.1
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.4e-30 138.7 76 84.2
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.2e-24 119.8 285 35.4
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 9.9e-24 116.7 86 61.6
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.2e-16 93.2 89 58.4
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 4.9e-15 87.8 161 36.0
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 7.1e-14 84.0 68 58.8
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.2e-13 83.2 66 59.1
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.0e-12 80.1 86 47.7
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.5e-11 76.3 42 78.6
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.8e-10 72.0 141 32.6
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.8e-10 72.0 62 58.1
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 4.0e-09 68.2 68 48.5
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 6.9e-09 67.4 73 56.2
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.0e-08 65.9 52 63.5
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.6e-08 65.5 49 63.3
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 4.5e-08 64.7 53 56.6
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 4.5e-08 64.7 53 56.6
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 2.2e-07 62.4 53 54.7
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 1.4e-06 59.7 71 50.7
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 4.2e-06 58.2 147 31.3
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 5.5e-06 57.8 35 71.4


User provided reference genes

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