Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G2903 Papaver somniferum HOM05D005927 ORTHO05D006952 4.4e-49 198.0 127 100.0
PSO063G4148 Papaver somniferum HOM05D005927 ORTHO05D006952 3.4e-25 118.6 93 67.7
Nn1g08157 Nelumbo nucifera HOM05D005927 ORTHO05D006952 4.6e-14 81.6 77 53.2
QL06p026881 Quercus lobata HOM05D005927 ORTHO05D006952 1.0e-13 80.5 80 53.8
Cfa008638 Carpinus fangiana HOM05D005927 ORTHO05D006952 3.0e-13 79.0 80 56.2
CSS0010844 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 6.7e-13 77.8 83 49.4
Haze_11664 Corylus avellana HOM05D005927 ORTHO05D006952 6.7e-13 77.8 80 56.2
Nn1g08158 Nelumbo nucifera HOM05D005927 ORTHO05D006952 6.7e-13 77.8 76 55.3
CSS0015614 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 8.8e-13 77.4 83 49.4
CSS0000209 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.1e-12 77.0 81 49.4
VMungo0251G3792 Vigna mungo HOM05D005927 ORTHO05D006952 1.5e-12 76.6 83 51.8
Aqoxy2G03917 Aquilegia oxysepala HOM05D005927 ORTHO05D006952 3.3e-12 75.5 80 48.8
Ca_17999_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 4.3e-12 75.1 80 52.5
arahy.Tifrunner.gnm1.ann1.N45PRE Arachis hypogaea HOM05D005927 ORTHO05D006952 5.7e-12 74.7 80 52.5
Lj4g0008619 Lotus japonicus HOM05D005927 ORTHO05D006952 5.7e-12 74.7 83 51.8
PSO063G4830 Papaver somniferum HOM05D005927 ORTHO05D006952 5.7e-12 74.7 83 51.8
arahy.Tifrunner.gnm1.ann1.DI9ALX Arachis hypogaea HOM05D005927 ORTHO05D006952 7.4e-12 74.3 79 53.2
Thecc.04G193700 Theobroma cacao HOM05D005927 ORTHO05D006952 7.4e-12 74.3 80 51.2
TPR.G11873 Trifolium pratense HOM05D005927 ORTHO05D006952 9.7e-12 73.9 80 51.2
Phvul.003G051400 Phaseolus vulgaris HOM05D005927 ORTHO05D006952 1.3e-11 73.6 80 50.0
COL.COLO4_05438 Corchorus olitorius HOM05D005927 ORTHO05D006952 1.7e-11 73.2 80 52.5
Medtr8g083150 Medicago truncatula HOM05D005927 ORTHO05D006952 1.7e-11 73.2 77 51.9
Glyma.08G108200 Glycine max HOM05D005927 ORTHO05D006952 2.8e-11 72.4 84 51.2
Glyma.05G151400 Glycine max HOM05D005927 ORTHO05D006952 3.7e-11 72.0 84 51.2
Cpa.g.sc157.40 Carica papaya HOM05D005927 ORTHO05D006952 8.2e-11 70.9 80 50.0
Gohir.D10G137100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 8.2e-11 70.9 80 51.2
Gorai.011G152200 Gossypium raimondii HOM05D005927 ORTHO05D006952 8.2e-11 70.9 80 51.2
Psat7g076040 Pisum sativum HOM05D005927 ORTHO05D006952 8.2e-11 70.9 77 51.9
Prupe.1G167100 Prunus persica HOM05D005927 ORTHO05D006952 8.2e-11 70.9 80 51.2
Sed0010469 Sechium edule HOM05D005927 ORTHO05D006952 1.1e-10 70.5 82 48.8
Ah.13g077890 Amaranthus hybridus HOM05D005927 ORTHO05D006952 1.8e-10 69.7 81 50.6
CiPaw.01G115600 Carya illinoinensis HOM05D005927 ORTHO05D006952 1.8e-10 69.7 79 44.3
MELO3C006773.2 Cucumis melo HOM05D005927 ORTHO05D006952 2.4e-10 69.3 79 51.9
Lalb_Chr25g0289221 Lupinus albus HOM05D005927 ORTHO05D006952 3.1e-10 68.9 85 49.4
RcHm_v2.0_Chr4g0413341 Rosa chinensis HOM05D005927 ORTHO05D006952 3.1e-10 68.9 83 51.8
arahy.Tifrunner.gnm1.ann1.6R0Q3T Arachis hypogaea HOM05D005927 ORTHO05D006952 4.1e-10 68.6 80 48.8
Eucgr.H02655 Eucalyptus grandis HOM05D005927 ORTHO05D006952 4.1e-10 68.6 79 48.1
Gohir.A10G129100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 5.3e-10 68.2 80 50.0
MD04G1018100 Malus domestica HOM05D005927 ORTHO05D006952 5.3e-10 68.2 80 48.8
Thecc.04G193600 Theobroma cacao HOM05D005927 ORTHO05D006952 5.3e-10 68.2 73 47.9
CsaV3_3G015740 Cucumis sativus L. HOM05D005927 ORTHO05D006952 6.9e-10 67.8 79 49.4
FvH4_4g13190 Fragaria vesca HOM05D005927 ORTHO05D006952 6.9e-10 67.8 83 49.4
FAN12G2699 Fragaria x ananassa HOM05D005927 ORTHO05D006952 6.9e-10 67.8 83 49.4
FAN17G1175 Fragaria x ananassa HOM05D005927 ORTHO05D006952 9.1e-10 67.4 80 50.0
Manes.05G201886 Manihot esculenta HOM05D005927 ORTHO05D006952 9.1e-10 67.4 79 46.8
Cfa010561 Carpinus fangiana HOM05D003411 ORTHO05D003914 1.2e-09 67.0 79 50.6
PGR083G0422 Punica granatum HOM05D005927 ORTHO05D006952 1.2e-09 67.0 79 48.1
PGR083G1024 Punica granatum HOM05D005927 ORTHO05D006952 1.2e-09 67.0 79 48.1
Hma1.2p1_1201F.1_g266720 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 1.5e-09 66.6 79 53.2
Rhsim09G0061200 Rhododendron simsii HOM05D005927 ORTHO05D006952 2.0e-09 66.2 76 53.9
AUR62020874 Chenopodium quinoa HOM05D005927 ORTHO05D006952 3.4e-09 65.5 74 50.0
Hma1.2p1_0349F.1_g131980 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 3.4e-09 65.5 79 45.6
FAN07G0035 Fragaria x ananassa HOM05D005927 ORTHO05D006952 4.5e-09 65.1 83 48.2
PGR083G0017 Punica granatum HOM05D005927 ORTHO05D006952 5.9e-09 64.7 78 46.2
EL10Ac3g07444 Beta vulgaris HOM05D005927 ORTHO05D006952 7.7e-09 64.3 77 48.1
Sopen09g035160 Solanum pennellii HOM05D005927 ORTHO05D006952 1.0e-08 63.9 80 48.8
Hma1.2p1_2624F.1_g325620 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 1.3e-08 63.5 79 44.3
TWI09G0897 Tripterygium wilfordii HOM05D005927 ORTHO05D006952 1.3e-08 63.5 76 47.4
SEGI_33666 Sequoiadendron giganteum HOM05D000668 ORTHO05D000516 1.7e-08 63.2 72 48.6
CSS0047969 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.2e-08 62.8 80 46.2
Solyc09g092235.1 Solanum lycopersicum HOM05D005927 ORTHO05D006952 2.2e-08 62.8 80 47.5
CSS0025530 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.9e-08 62.4 80 47.5
Sabra17G0053700 Salix brachista HOM05D005927 ORTHO05D006952 2.9e-08 62.4 77 48.1
Hma1.2p1_0349F.1_g132010 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 3.8e-08 62.0 79 43.0
Hma1.2p1_2624F.1_g325626 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 3.8e-08 62.0 79 43.0
CSS0030768 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 6.5e-08 61.2 80 45.0
SalBow3G2584 Salvia bowleyana HOM05D005927 ORTHO05D006952 6.5e-08 61.2 75 44.0
Thecc.05G312600 Theobroma cacao HOM05D000668 ORTHO05D000516 6.5e-08 61.2 78 43.6
CSS0021083 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 8.5e-08 60.8 74 47.3
Ciclev10006252m.g Citrus clementina HOM05D005927 ORTHO05D006952 8.5e-08 60.8 82 46.3
FAN20G0886 Fragaria x ananassa HOM05D000668 ORTHO05D000516 8.5e-08 60.8 73 43.8
Hma1.2p1_0209F.1_g088620 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 8.5e-08 60.8 79 41.8
Lsat_1_v5_gn_2_47681 Lactuca sativa HOM05D005927 ORTHO05D006952 8.5e-08 60.8 74 44.6
PSO210G3991 Papaver somniferum HOM05D000668 ORTHO05D000516 8.5e-08 60.8 78 44.9
PSO210G4451 Papaver somniferum HOM05D000668 ORTHO05D000516 8.5e-08 60.8 78 44.9
RcHm_v2.0_Chr6g0293531 Rosa chinensis HOM05D000668 ORTHO05D000516 8.5e-08 60.8 73 43.8
THA.LOC104804793 Tarenaya hassleriana HOM05D005927 ORTHO05D006952 8.5e-08 60.8 88 44.3
MSTRG.5110 Avicennia marina HOM05D000668 ORTHO05D000516 1.1e-07 60.5 80 46.2
FvH4_2g25351 Fragaria vesca HOM05D000668 ORTHO05D000516 1.4e-07 60.1 78 42.3
FvH4_4g18001 Fragaria vesca HOM05D000668 ORTHO05D000516 1.4e-07 60.1 75 44.0
FAN12G4126 Fragaria x ananassa HOM05D000668 ORTHO05D000516 1.4e-07 60.1 75 44.0
FAN24G3138 Fragaria x ananassa HOM05D000668 ORTHO05D000516 1.4e-07 60.1 78 42.3
FAN27G0851 Fragaria x ananassa HOM05D000668 ORTHO05D000516 1.4e-07 60.1 78 42.3
Ca_10128_v3 Cicer arietinum L. HOM05D000668 ORTHO05D000516 1.9e-07 59.7 73 42.5
COL.COLO4_05437 Corchorus olitorius HOM05D005927 ORTHO05D006952 1.9e-07 59.7 73 46.6
Aa31LG8G10360 Aethionema arabicum HOM05D005927 ORTHO05D006952 2.5e-07 59.3 79 39.2
MSTRG.14058 Avicennia marina HOM05D005927 ORTHO05D006952 2.5e-07 59.3 77 45.5
CANSAT78G2028 Cannabis sativa HOM05D005927 ORTHO05D006952 2.5e-07 59.3 77 42.9
AUR62032002 Chenopodium quinoa HOM05D000668 ORTHO05D000516 2.5e-07 59.3 80 42.5
AUR62040735 Chenopodium quinoa HOM05D000668 ORTHO05D000516 2.5e-07 59.3 78 44.9
Gohir.A11G115300 Gossypium hirsutum HOM05D000668 ORTHO05D000516 2.5e-07 59.3 78 41.0
AUR62018545 Chenopodium quinoa HOM05D005927 ORTHO05D006952 3.2e-07 58.9 72 47.2
COL.COLO4_10515 Corchorus olitorius HOM05D000668 ORTHO05D000516 3.2e-07 58.9 78 42.3
Duzib268G0459 Durio zibethinus HOM05D005927 ORTHO05D006952 3.2e-07 58.9 73 45.2
Gohir.D11G120300 Gossypium hirsutum HOM05D000668 ORTHO05D000516 3.2e-07 58.9 78 41.0
Gorai.007G129000 Gossypium raimondii HOM05D000668 ORTHO05D000516 3.2e-07 58.9 78 41.0
EL10Ac3g06595 Beta vulgaris HOM05D000668 ORTHO05D000516 4.2e-07 58.5 76 46.1
CSS0027848 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 4.2e-07 58.5 80 43.8
CSS0029764 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 4.2e-07 58.5 80 45.0
CiPaw.02G064100 Carya illinoinensis HOM05D005927 ORTHO05D006952 4.2e-07 58.5 82 46.3
Ciclev10023750m.g Citrus clementina HOM05D000668 ORTHO05D000516 4.2e-07 58.5 73 42.5
Duzib177G0542 Durio zibethinus HOM05D000668 ORTHO05D000516 5.5e-07 58.2 78 41.0
Eucgr.B01916 Eucalyptus grandis HOM05D000668 ORTHO05D000516 5.5e-07 58.2 76 43.4
MD11G1304400 Malus domestica HOM05D000668 ORTHO05D000516 5.5e-07 58.2 75 40.0
Nitab4.5_0008329g0040 Nicotiana tabacum HOM05D000668 ORTHO05D000516 5.5e-07 58.2 77 45.5
TAR365G0715 Trochodendron aralioides HOM05D000668 ORTHO05D000516 5.5e-07 58.2 78 42.3
Dinv40341 Davidia involucrata HOM05D000668 ORTHO05D000516 7.2e-07 57.8 79 41.8
Gohir.A11G267800 Gossypium hirsutum HOM05D000668 ORTHO05D000516 7.2e-07 57.8 77 41.6
Gorai.007G299900 Gossypium raimondii HOM05D000668 ORTHO05D000516 7.2e-07 57.8 77 41.6
Oeu056432.1 Olea europaea HOM05D005927 ORTHO05D006952 7.2e-07 57.8 80 45.0
RcHm_v2.0_Chr4g0422211 Rosa chinensis HOM05D000668 ORTHO05D000516 7.2e-07 57.8 77 40.3
Sed0016502 Sechium edule HOM05D005927 ORTHO05D006952 7.2e-07 57.8 78 43.6
SGA_v2.0_scaffold172G38990 Striga asiatica HOM05D000668 ORTHO05D000516 7.2e-07 57.8 80 41.2
TAR636G0737 Trochodendron aralioides HOM05D000668 ORTHO05D000516 7.2e-07 57.8 78 42.3
Gohir.D08G225600 Gossypium hirsutum HOM05D000668 ORTHO05D000516 9.4e-07 57.4 78 42.3
Gorai.004G239600 Gossypium raimondii HOM05D000668 ORTHO05D000516 9.4e-07 57.4 78 42.3
Nitab4.5_0002344g0010 Nicotiana tabacum HOM05D000668 ORTHO05D000516 9.4e-07 57.4 75 48.0
Peaxi162Scf00037g00921 Petunia axillaris HOM05D000668 ORTHO05D000516 9.4e-07 57.4 79 43.0
Thecc.01G297000 Theobroma cacao HOM05D000668 ORTHO05D000516 9.4e-07 57.4 73 42.5
Gohir.A08G208700 Gossypium hirsutum HOM05D000668 ORTHO05D000516 1.2e-06 57.0 78 42.3
Gohir.D09G200900 Gossypium hirsutum HOM05D005927 ORTHO05D006952 1.2e-06 57.0 80 42.5
Nn3g21435 Nelumbo nucifera HOM05D000668 ORTHO05D000516 1.2e-06 57.0 78 41.0
Prupe.8G258000 Prunus persica HOM05D000668 ORTHO05D000516 1.2e-06 57.0 73 41.1
GSVIVG01017757001 Vitis vinifera HOM05D000668 ORTHO05D000516 1.2e-06 57.0 77 42.9
CSS0034518 Camellia sinensis var. sinensis HOM05D000668 ORTHO05D000516 1.6e-06 56.6 73 41.1
Carub.0033s0004 Capsella rubella HOM05D000668 ORTHO05D000516 1.6e-06 56.6 73 43.8
CDE12G0954 Ceratophyllum demersum HOM05D000668 ORTHO05D000516 1.6e-06 56.6 73 45.2
Migut.N02079 Erythranthe guttata HOM05D000668 ORTHO05D000516 1.6e-06 56.6 80 41.2
Sc05g0004210 Simmondsia chinensis HOM05D000668 ORTHO05D000516 1.6e-06 56.6 73 38.4
Carub.0001s0203 Capsella rubella HOM05D000668 ORTHO05D000516 2.1e-06 56.2 78 42.3
Carub.0006s2487 Capsella rubella HOM05D000668 ORTHO05D000516 2.1e-06 56.2 79 43.0
MELO3C004224.2 Cucumis melo HOM05D000668 ORTHO05D000516 2.1e-06 56.2 78 42.3
Dinv19718 Davidia involucrata HOM05D000668 ORTHO05D000516 2.1e-06 56.2 73 42.5
Potri.008G208200 Populus trichocarpa HOM05D000668 ORTHO05D000516 2.1e-06 56.2 78 38.5
Sabra08G0153600 Salix brachista HOM05D000668 ORTHO05D000516 2.1e-06 56.2 73 41.1
Sc16g0008620 Simmondsia chinensis HOM05D000668 ORTHO05D000516 2.1e-06 56.2 73 42.5
ATR0796G076 Amborella trichopoda HOM05D000668 ORTHO05D000516 2.7e-06 55.8 71 45.1
CSS0046414 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.7e-06 55.8 78 43.6
CDE01G0653 Ceratophyllum demersum HOM05D000668 ORTHO05D000516 2.7e-06 55.8 73 43.8
Gohir.D11G277700 Gossypium hirsutum HOM05D000668 ORTHO05D000516 2.7e-06 55.8 77 41.6
Oeu010916.1 Olea europaea HOM05D000668 ORTHO05D000516 2.7e-06 55.8 73 43.8
Phvul.007G197000 Phaseolus vulgaris HOM05D000668 ORTHO05D000516 2.7e-06 55.8 78 41.0
Solyc01g099520.3 Solanum lycopersicum HOM05D000668 ORTHO05D000516 2.7e-06 55.8 79 43.0
Sopen01g043030 Solanum pennellii HOM05D000668 ORTHO05D000516 2.7e-06 55.8 79 43.0
PGSC0003DMG400026439 Solanum tuberosum HOM05D005927 ORTHO05D006952 2.7e-06 55.8 65 50.8
SGA_v2.0_scaffold7G04055 Striga asiatica HOM05D005927 ORTHO05D006952 2.7e-06 55.8 79 41.8
AT1G02900 Arabidopsis thaliana HOM05D000668 ORTHO05D000516 3.6e-06 55.5 78 41.0
Potri.017G059800 Populus trichocarpa HOM05D005927 ORTHO05D006952 3.6e-06 55.5 80 42.5
PGSC0003DMG400024749 Solanum tuberosum HOM05D000668 ORTHO05D000516 3.6e-06 55.5 79 43.0
BraA08t35651Z Brassica rapa HOM05D000668 ORTHO05D000516 4.7e-06 55.1 88 37.5
Cc01_g20640 Coffea canephora HOM05D000668 ORTHO05D000516 4.7e-06 55.1 73 42.5
Glyma.03G236000 Glycine max HOM05D000668 ORTHO05D000516 4.7e-06 55.1 66 43.9
Glyma.19G233700 Glycine max HOM05D000668 ORTHO05D000516 4.7e-06 55.1 66 43.9
Hma1.2p1_0078F.1_g040560 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 4.7e-06 55.1 72 41.7
Hma1.2p1_3290F.1_g334910 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 4.7e-06 55.1 72 41.7
Sed0014038 Sechium edule HOM05D000668 ORTHO05D000516 4.7e-06 55.1 78 42.3
Sed0026350 Sechium edule HOM05D000668 ORTHO05D000516 4.7e-06 55.1 79 41.8
Sc09g0002960 Simmondsia chinensis HOM05D000668 ORTHO05D000516 4.7e-06 55.1 72 41.7
TAR633G1015 Trochodendron aralioides HOM05D000668 ORTHO05D000516 4.7e-06 55.1 78 42.3
VMungo0540G0997 Vigna mungo HOM05D000668 ORTHO05D000516 4.7e-06 55.1 66 43.9
BcaC07g36985 Brassica carinata HOM05D000668 ORTHO05D000516 6.1e-06 54.7 80 42.5
BcaC07g36987 Brassica carinata HOM05D000668 ORTHO05D000516 6.1e-06 54.7 80 42.5
C08p00320 Brassica napus HOM05D000668 ORTHO05D000516 6.1e-06 54.7 80 42.5
BolC8t46833H Brassica oleracea HOM05D000668 ORTHO05D000516 6.1e-06 54.7 80 42.5
AUR62032736 Chenopodium quinoa HOM05D000668 ORTHO05D000516 6.1e-06 54.7 82 41.5
Manes.08G118000 Manihot esculenta HOM05D000668 ORTHO05D000516 6.1e-06 54.7 80 41.2
Potri.001G321300 Populus trichocarpa HOM05D005927 ORTHO05D006952 6.1e-06 54.7 77 45.5
PGR031G2049 Punica granatum HOM05D000668 ORTHO05D000516 6.1e-06 54.7 79 41.8
Ah.04g153540 Amaranthus hybridus HOM05D000668 ORTHO05D000516 7.9e-06 54.3 78 42.3
MSTRG.27981 Avicennia marina HOM05D000668 ORTHO05D000516 7.9e-06 54.3 77 39.0
CAN.G665.20 Capsicum annuum HOM05D000668 ORTHO05D000516 7.9e-06 54.3 78 42.3
CiPaw.08G097500 Carya illinoinensis HOM05D000668 ORTHO05D000516 7.9e-06 54.3 74 41.9
Haze_04143 Corylus avellana HOM05D000668 ORTHO05D000516 7.9e-06 54.3 78 39.7
Haze_04895 Corylus avellana HOM05D000668 ORTHO05D000516 7.9e-06 54.3 75 41.3
Duzib128G0017 Durio zibethinus HOM05D000668 ORTHO05D000516 7.9e-06 54.3 85 38.8
Manes.05G064300 Manihot esculenta HOM05D000668 ORTHO05D000516 7.9e-06 54.3 75 41.3
VMungo1383G1799 Vigna mungo HOM05D000668 ORTHO05D000516 7.9e-06 54.3 66 43.9
GSVIVG01027973001 Vitis vinifera HOM05D000668 ORTHO05D000516 7.9e-06 54.3 74 41.9


User provided reference genes

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