Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 2.0e-153 545.8 295 100.0
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 5.5e-135 484.6 339 81.1
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 6.4e-67 258.5 234 58.5
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 6.4e-67 258.5 265 54.7
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 6.9e-61 238.4 253 51.4
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 1.0e-56 224.6 269 47.2
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 4.3e-55 219.2 210 55.7
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 9.6e-55 218.0 210 53.8
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 2.8e-54 216.5 270 47.0
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.8e-54 216.5 206 53.9
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.1e-53 214.5 214 52.8
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.4e-53 214.2 209 54.1
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 1.8e-53 213.8 248 47.6
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 9.0e-53 211.5 223 51.6
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.2e-52 211.1 254 46.1
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.5e-52 210.7 256 48.0
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 1.5e-52 210.7 198 56.1
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.5e-52 210.7 269 43.9
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 2.6e-52 209.9 254 46.1
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 3.4e-52 209.5 275 45.5
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 4.5e-52 209.1 198 56.1
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 4.5e-52 209.1 235 48.5
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 5.8e-52 208.8 253 47.0
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.0e-51 208.0 219 50.7
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 1.0e-51 208.0 222 52.7
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 1.3e-51 207.6 254 44.9
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.7e-51 207.2 232 48.7
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 2.2e-51 206.8 222 50.5
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 2.2e-51 206.8 233 49.8
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 4.9e-51 205.7 216 50.9
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 1.4e-50 204.1 258 46.1
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 1.9e-50 203.8 249 47.0
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 1.9e-50 203.8 250 45.6
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 2.5e-50 203.4 282 42.9
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 2.5e-50 203.4 195 54.9
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 3.2e-50 203.0 290 42.4
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 3.2e-50 203.0 290 42.4
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 5.5e-50 202.2 286 43.7
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 5.5e-50 202.2 268 46.3
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 5.5e-50 202.2 270 44.4
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 9.3e-50 201.4 284 43.3
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 9.3e-50 201.4 254 45.3
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.2e-49 201.1 233 49.4
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.6e-49 200.7 286 44.1
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 2.7e-49 199.9 287 42.5
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 2.7e-49 199.9 269 43.9
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 2.7e-49 199.9 298 43.6
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 4.6e-49 199.1 257 47.1
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 4.6e-49 199.1 232 47.8
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 6.1e-49 198.7 209 51.2
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.0e-48 198.0 271 43.9
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.0e-48 198.0 271 43.9
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 1.0e-48 198.0 261 45.6
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 3.0e-48 196.4 278 43.2
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 3.0e-48 196.4 214 50.5
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 3.9e-48 196.1 291 41.6
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 5.1e-48 195.7 233 47.6
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 5.1e-48 195.7 200 50.5
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 8.7e-48 194.9 198 53.0
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 9.7e-47 191.4 229 45.4
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.3e-46 191.0 269 44.2
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.6e-46 190.7 201 49.8
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 6.3e-46 188.7 264 43.2
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 6.3e-46 188.7 296 39.9
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 8.2e-46 188.3 296 41.6
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 1.8e-45 187.2 211 46.4
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 6.9e-45 185.3 262 43.1
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 6.9e-45 185.3 292 41.1
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 1.2e-44 184.5 203 50.7
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 1.5e-44 184.1 270 44.8
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.5e-44 184.1 229 45.9
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 2.0e-44 183.7 252 46.4
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 2.0e-44 183.7 229 43.7
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 2.6e-44 183.3 262 44.3
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 7.7e-44 181.8 253 42.7
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 7.7e-44 181.8 207 50.2
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 1.0e-43 181.4 280 42.5
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 1.0e-43 181.4 280 42.5
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 2.2e-43 180.3 206 48.5
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 2.2e-43 180.3 229 42.8
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 5.0e-43 179.1 230 46.5
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.1e-42 177.9 273 38.8
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 1.4e-42 177.6 222 45.9
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 3.2e-42 176.4 197 47.2
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 7.9e-41 171.8 255 40.0
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.8e-40 170.6 216 43.5
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 1.8e-40 170.6 247 41.3
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 3.0e-40 169.9 186 47.8
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 5.1e-40 169.1 183 54.1
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 5.1e-40 169.1 196 49.5
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 8.8e-40 168.3 280 37.5
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 1.5e-39 167.5 230 41.7
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 2.0e-39 167.2 123 69.1
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.3e-39 166.4 212 44.8
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.1e-37 161.4 285 36.8
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.2e-36 157.9 193 45.6
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.0e-35 154.8 204 40.2
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 3.8e-35 152.9 109 63.3
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 2.0e-31 140.6 177 48.0
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 2.2e-30 137.1 196 37.8
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.4e-29 134.4 214 42.1
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 4.1e-29 132.9 246 32.9
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 2.0e-28 130.6 118 57.6
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 5.9e-28 129.0 189 39.7
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 1.3e-27 127.9 149 44.3
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.8e-27 126.3 201 40.3
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 5.0e-27 125.9 93 68.8
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.5e-27 125.6 199 38.2
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.1e-26 124.8 269 33.8
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.5e-26 124.4 279 30.8
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.9e-26 124.0 161 41.6
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 4.2e-26 122.9 130 46.2
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 4.2e-26 122.9 253 36.0
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 7.2e-26 122.1 187 39.0
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 1.6e-25 120.9 130 45.4
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.6e-25 120.9 130 45.4
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 2.7e-25 120.2 130 46.2
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.7e-25 120.2 78 67.9
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 3.6e-25 119.8 109 50.5
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 4.7e-25 119.4 242 32.6
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.1e-25 119.0 201 36.8
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 1.4e-24 117.9 105 55.2
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.0e-24 116.7 292 32.5
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 6.7e-24 115.5 205 33.7
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 1.5e-23 114.4 224 33.0
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 3.3e-23 113.2 222 32.0
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.3e-22 111.3 102 56.9
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 4.8e-22 109.4 120 45.0
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.1e-21 108.2 150 48.0
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 4.1e-21 106.3 133 44.4
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.2e-20 104.8 82 65.9
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.6e-20 104.4 129 45.0
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-19 99.8 104 42.3
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 8.5e-19 98.6 98 55.1
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 5.5e-18 95.9 206 31.6
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 2.1e-17 94.0 253 30.4
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 8.0e-17 92.0 124 41.9
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 4.0e-16 89.7 67 61.2
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 8.8e-16 88.6 241 29.0
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.5e-15 87.8 134 39.6
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 3.2e-10 70.1 69 47.8
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.1e-09 67.4 56 51.8
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 8.0e-09 65.5 42 64.3
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 3.0e-08 63.5 137 33.6


User provided reference genes

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