Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 9.0e-167 590.1 284 100.0
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 6.0e-163 577.4 284 97.9
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 1.2e-131 473.4 282 78.4
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 3.0e-130 468.8 283 77.7
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 3.0e-130 468.8 283 79.2
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 7.4e-129 464.2 312 72.4
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 1.8e-127 459.5 283 77.0
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 1.2e-126 456.8 283 77.4
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 5.0e-125 451.4 283 76.0
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 6.5e-125 451.1 281 76.9
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 8.5e-125 450.7 281 76.5
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.1e-124 450.3 283 75.6
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 3.2e-124 448.7 281 76.9
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 4.2e-124 448.4 282 75.2
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 4.2e-124 448.4 282 74.8
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 4.2e-124 448.4 283 75.3
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 5.5e-124 448.0 282 75.5
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 5.5e-124 448.0 283 76.3
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 9.4e-124 447.2 283 76.0
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 9.4e-124 447.2 269 78.8
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 2.1e-123 446.0 283 75.6
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 2.7e-123 445.7 280 75.0
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 3.6e-123 445.3 281 74.4
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 3.6e-123 445.3 283 76.0
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 4.7e-123 444.9 284 76.1
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 4.7e-123 444.9 282 76.2
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 1.8e-122 443.0 283 74.9
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 1.8e-122 443.0 281 76.2
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 1.8e-122 443.0 282 76.6
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 3.0e-122 442.2 282 73.0
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 3.0e-122 442.2 282 73.8
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 3.0e-122 442.2 283 75.3
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 5.2e-122 441.4 281 75.4
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 5.2e-122 441.4 283 76.0
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 5.2e-122 441.4 283 76.0
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 5.2e-122 441.4 283 76.0
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 6.7e-122 441.0 280 73.9
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 6.7e-122 441.0 282 74.5
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 1.5e-121 439.9 282 73.8
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 3.3e-121 438.7 280 73.6
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 4.4e-121 438.3 281 71.9
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 5.7e-121 438.0 282 73.4
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 5.7e-121 438.0 279 74.9
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 7.5e-121 437.6 280 73.6
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 7.5e-121 437.6 280 73.6
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 7.5e-121 437.6 280 72.9
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 1.3e-120 436.8 282 73.4
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 1.3e-120 436.8 279 75.6
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 1.7e-120 436.4 282 74.5
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 1.7e-120 436.4 281 72.2
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 2.2e-120 436.0 283 74.9
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 2.2e-120 436.0 283 74.9
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 2.8e-120 435.6 280 72.5
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 2.8e-120 435.6 280 72.5
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 3.7e-120 435.3 281 72.2
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 3.7e-120 435.3 279 74.6
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 4.8e-120 434.9 284 73.6
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 6.3e-120 434.5 280 72.5
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 8.2e-120 434.1 282 74.8
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 8.2e-120 434.1 283 73.1
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 1.1e-119 433.7 283 73.1
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.1e-119 433.7 283 74.6
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.4e-119 433.3 283 74.6
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 1.8e-119 433.0 288 72.6
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 1.8e-119 433.0 279 75.3
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 2.4e-119 432.6 280 71.8
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 3.1e-119 432.2 286 75.5
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 9.1e-119 430.6 282 74.1
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 9.1e-119 430.6 284 73.6
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 1.2e-118 430.3 277 74.4
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 4.5e-118 428.3 280 72.9
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.5e-118 428.3 281 74.0
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 1.0e-117 427.2 274 75.5
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 5.0e-117 424.9 283 74.6
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 6.5e-117 424.5 283 73.5
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 1.1e-116 423.7 282 71.3
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 7.2e-116 421.0 315 66.7
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 9.4e-116 420.6 279 73.1
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 3.6e-115 418.7 282 71.3
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 4.7e-115 418.3 283 71.0
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 1.4e-114 416.8 283 72.4
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.8e-114 416.4 280 69.3
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 6.8e-114 414.5 268 74.3
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 6.8e-114 414.5 287 71.8
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 7.5e-113 411.0 270 74.8
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 1.3e-112 410.2 283 71.4
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 1.3e-112 410.2 297 69.0
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 2.2e-112 409.5 268 73.5
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 9.1e-111 404.1 283 69.6
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 9.1e-111 404.1 283 69.6
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.2e-110 403.7 276 73.6
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 6.5e-109 397.9 248 76.2
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 5.5e-108 394.8 276 67.4
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.7e-107 392.5 250 74.0
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 6.1e-107 391.3 269 69.5
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 5.2e-106 388.3 276 66.7
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 4.4e-105 385.2 261 68.2
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.1e-103 380.6 263 73.8
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 3.1e-103 379.0 236 76.3
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 2.9e-101 372.5 245 74.3
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 2.3e-98 362.8 264 65.2
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 7.5e-97 357.8 251 66.5
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 2.9e-96 355.9 251 66.5
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 4.0e-90 335.5 424 46.0
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 2.0e-89 333.2 282 54.6
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 7.5e-89 331.3 190 82.1
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 4.9e-88 328.6 248 63.3
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 1.4e-87 327.0 286 55.9
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 3.6e-83 312.4 280 53.6
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.4e-82 310.5 410 45.1
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 1.5e-81 307.0 267 58.1
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 5.2e-74 282.0 266 54.5
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 2.6e-73 279.6 283 48.4
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 6.4e-72 275.0 167 75.4
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 4.1e-71 272.3 167 74.9
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 7.8e-70 268.1 176 71.0
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 2.3e-69 266.5 144 84.0
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.1e-68 264.2 180 65.6
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 1.1e-68 264.2 308 47.1
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 3.9e-61 239.2 295 43.7
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 5.6e-60 235.3 147 73.5
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 1.3e-56 224.2 295 42.7
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 8.7e-53 211.5 147 63.9
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 2.8e-51 206.5 249 47.4
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 1.7e-48 197.2 142 68.3
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.1e-46 190.3 135 70.4
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 1.9e-44 183.7 248 44.4
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 2.4e-42 176.8 98 82.7
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 2.9e-40 169.9 229 40.2
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 2.5e-28 130.2 75 80.0
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 2.8e-27 126.7 110 55.5
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 8.2e-27 125.2 70 80.0
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 1.0e-24 118.2 72 73.6
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 1.0e-24 118.2 72 73.6
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.9e-23 114.0 80 67.5
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 9.1e-18 95.1 80 58.8
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 3.4e-17 93.2 87 55.2
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.7e-17 92.0 86 58.1
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.0e-16 91.7 75 61.3
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 4.2e-15 86.3 92 50.0
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 7.9e-14 82.0 52 73.1
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 1.8e-13 80.9 57 70.2
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 6.5e-08 62.4 172 26.7


User provided reference genes

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