Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 4.6e-135 484.6 246 100.0
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 6.9e-115 417.5 302 74.2
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.3e-41 174.1 287 38.7
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.2e-39 167.5 288 37.2
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 4.7e-39 165.6 238 40.3
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 6.8e-38 161.8 292 37.7
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 8.9e-38 161.4 287 35.2
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 1.5e-37 160.6 287 35.2
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 7.6e-37 158.3 287 35.2
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 2.9e-36 156.4 286 34.3
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 4.9e-36 155.6 209 42.6
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 3.2e-35 152.9 247 37.7
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 1.6e-34 150.6 294 34.4
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 2.1e-34 150.2 300 35.3
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 2.7e-34 149.8 290 35.2
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 3.5e-34 149.4 266 38.0
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 5.1e-33 145.6 292 34.9
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 2.5e-32 143.3 333 33.0
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 3.3e-32 142.9 282 36.2
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 4.3e-32 142.5 239 39.7
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 4.3e-32 142.5 256 32.8
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 5.6e-32 142.1 294 35.0
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 7.3e-32 141.7 218 42.7
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 4.7e-31 139.0 291 34.0
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 1.1e-30 137.9 292 33.2
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 1.4e-30 137.5 249 33.7
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 3.1e-30 136.3 244 36.5
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 6.9e-30 135.2 324 32.4
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 6.9e-30 135.2 283 33.6
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 8.9e-30 134.8 294 34.4
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 1.2e-29 134.4 250 38.4
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 1.2e-29 134.4 282 34.8
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 4.4e-29 132.5 301 33.6
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 4.4e-29 132.5 199 42.2
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 1.3e-28 131.0 181 42.0
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 1.1e-27 127.9 263 33.1
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 2.4e-27 126.7 202 39.1
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 3.2e-27 126.3 187 42.8
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 1.2e-26 124.4 197 40.6
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 1.6e-26 124.0 158 46.2
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 2.1e-26 123.6 257 33.5
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 2.1e-26 123.6 248 33.9
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 7.8e-26 121.7 243 32.5
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 7.8e-26 121.7 198 35.9
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 1.0e-25 121.3 249 30.9
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 1.7e-25 120.6 286 28.7
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 3.0e-25 119.8 280 33.2
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 5.1e-25 119.0 294 31.0
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 6.6e-25 118.6 272 31.2
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 6.6e-25 118.6 285 32.3
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 1.1e-24 117.9 248 33.9
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 1.5e-24 117.5 259 31.3
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 2.5e-24 116.7 200 34.0
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 5.6e-24 115.5 207 35.7
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 3.6e-23 112.8 293 31.7
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 3.6e-23 112.8 273 30.4
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 6.2e-23 112.1 273 30.0
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 8.1e-23 111.7 194 37.1
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 8.1e-23 111.7 265 32.1
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 1.1e-22 111.3 269 31.2
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 1.1e-22 111.3 194 36.6
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 1.4e-22 110.9 261 30.7
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 2.4e-22 110.2 292 28.8
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 3.1e-22 109.8 144 41.0
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 6.9e-22 108.6 270 30.7
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 1.2e-21 107.8 243 31.3
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 1.5e-21 107.5 179 40.8
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 3.4e-21 106.3 253 30.8
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 9.9e-21 104.8 261 30.7
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 9.9e-21 104.8 261 30.7
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 9.9e-21 104.8 267 30.3
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 2.9e-20 103.2 266 30.8
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 3.8e-20 102.8 199 32.2
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 1.4e-19 100.9 236 30.1
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 9.3e-19 98.2 200 33.5
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 2.1e-18 97.1 196 33.7
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 6.0e-18 95.5 271 26.9
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 6.0e-18 95.5 137 42.3
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 6.0e-18 95.5 300 28.7
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.3e-17 94.4 274 28.1
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 1.8e-17 94.0 150 43.3
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 1.3e-15 87.8 117 41.0
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 2.8e-15 86.7 295 25.1
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 1.8e-14 84.0 276 26.8
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 9.0e-14 81.6 148 33.1
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 1.3e-12 77.8 129 34.1
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 4.9e-12 75.9 200 28.5
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 5.1e-09 65.9 126 33.3
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 5.6e-08 62.4 169 29.6


User provided reference genes

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