Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 2.9e-111 405.2 204 100.0
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 3.9e-71 271.9 225 69.3
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 4.3e-70 268.5 215 70.2
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 4.8e-69 265.0 210 70.0
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 2.4e-68 262.7 214 70.6
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 2.0e-67 259.6 212 68.4
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 3.4e-67 258.8 212 70.8
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 7.6e-67 257.7 214 67.8
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 9.9e-67 257.3 218 64.2
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.3e-66 256.9 214 66.8
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 1.7e-66 256.5 224 63.8
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 2.2e-66 256.1 213 64.3
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 2.9e-66 255.8 215 68.4
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 3.8e-66 255.4 209 69.9
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 6.4e-66 254.6 214 69.2
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 6.4e-66 254.6 214 69.2
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 6.4e-66 254.6 206 66.0
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 1.1e-65 253.8 214 63.1
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 1.4e-65 253.4 208 68.3
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 3.2e-65 252.3 206 66.5
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 4.2e-65 251.9 214 66.4
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 4.2e-65 251.9 217 64.5
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 5.4e-65 251.5 206 65.5
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 7.1e-65 251.1 209 63.2
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 1.2e-64 250.4 217 65.4
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.2e-64 250.4 209 67.5
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 1.2e-64 250.4 209 67.0
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 1.6e-64 250.0 214 66.8
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 1.6e-64 250.0 208 68.3
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 2.1e-64 249.6 206 68.0
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 2.1e-64 249.6 208 66.3
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 2.7e-64 249.2 213 68.5
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 6.0e-64 248.1 217 65.4
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 6.0e-64 248.1 206 67.0
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 1.0e-63 247.3 215 64.7
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 1.7e-63 246.5 210 65.7
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 2.3e-63 246.1 204 68.1
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 3.0e-63 245.7 213 66.2
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 1.1e-62 243.8 206 65.0
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 4.3e-62 241.9 193 67.4
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 7.4e-62 241.1 163 76.7
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 9.6e-62 240.7 169 77.5
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 1.3e-61 240.4 205 66.3
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 1.3e-61 240.4 205 66.3
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.3e-61 240.4 222 63.1
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 2.1e-61 239.6 228 61.0
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 2.1e-61 239.6 204 67.2
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 2.1e-61 239.6 210 64.8
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 3.6e-61 238.8 204 66.7
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 6.2e-61 238.0 192 66.7
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 8.1e-61 237.7 205 64.9
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 1.4e-60 236.9 222 63.1
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 1.8e-60 236.5 215 61.4
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 3.1e-60 235.7 260 56.2
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 4.0e-60 235.3 240 58.3
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 5.3e-60 235.0 223 61.9
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 6.9e-60 234.6 229 60.7
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 6.9e-60 234.6 212 64.2
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 6.9e-60 234.6 219 60.3
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 9.0e-60 234.2 222 62.6
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 9.0e-60 234.2 216 61.6
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.2e-59 233.8 227 61.2
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 1.2e-59 233.8 213 62.9
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.5e-59 233.4 224 62.1
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 4.5e-59 231.9 205 63.9
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 1.7e-58 229.9 215 61.4
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 1.7e-58 229.9 219 60.7
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 2.2e-58 229.6 151 80.1
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 6.4e-58 228.0 210 58.6
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 6.4e-58 228.0 258 58.1
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 8.4e-58 227.6 203 63.5
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 2.4e-57 226.1 131 86.3
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 3.2e-57 225.7 180 68.3
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 3.2e-57 225.7 281 52.7
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 5.5e-57 224.9 212 59.9
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 7.1e-57 224.6 226 59.7
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 1.6e-56 223.4 219 59.4
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 2.1e-56 223.0 212 58.5
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 2.1e-56 223.0 187 66.8
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 2.7e-56 222.6 209 58.4
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 2.7e-56 222.6 182 65.4
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 3.5e-56 222.2 204 60.3
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 3.5e-56 222.2 219 58.4
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 4.6e-56 221.9 219 58.0
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 7.9e-56 221.1 212 59.0
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 7.9e-56 221.1 215 59.5
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 7.9e-56 221.1 215 59.5
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 7.9e-56 221.1 215 59.1
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 7.9e-56 221.1 219 58.0
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.3e-55 220.3 130 83.8
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 1.8e-55 219.9 210 59.0
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 2.3e-55 219.5 217 59.0
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 3.0e-55 219.2 217 59.0
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 3.9e-55 218.8 286 48.3
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 6.7e-55 218.0 218 58.3
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 1.1e-54 217.2 216 56.9
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 1.5e-54 216.9 187 65.8
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 1.5e-54 216.9 191 59.7
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 4.3e-54 215.3 194 65.5
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 7.4e-54 214.5 204 63.7
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 7.4e-54 214.5 151 73.5
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 1.3e-53 213.8 203 60.6
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 1.3e-53 213.8 202 64.4
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 4.8e-53 211.8 199 61.8
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.1e-52 210.7 193 60.6
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 1.8e-52 209.9 227 55.5
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 5.3e-52 208.4 208 51.9
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 6.9e-52 208.0 186 63.4
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 1.2e-51 207.2 217 55.8
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 1.5e-51 206.8 189 63.0
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 1.9e-49 199.9 145 69.0
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 2.5e-49 199.5 197 58.4
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 4.2e-49 198.7 176 64.8
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 9.3e-49 197.6 131 74.0
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 1.2e-48 197.2 120 81.7
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 1.6e-48 196.8 139 70.5
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 3.5e-48 195.7 155 64.5
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.0e-47 194.1 206 56.3
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 5.1e-47 191.8 206 55.8
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 1.5e-46 190.3 194 55.7
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 1.9e-46 189.9 195 56.9
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 2.5e-46 189.5 203 56.2
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 7.4e-46 188.0 173 61.3
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 7.4e-46 188.0 164 65.9
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 2.0e-43 179.9 192 57.8
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 2.2e-42 176.4 163 60.1
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 2.5e-41 172.9 163 62.0
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 3.2e-41 172.6 115 72.2
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 5.5e-41 171.8 208 48.6
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.0e-39 167.5 133 63.9
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 1.3e-39 167.2 157 59.2
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.3e-39 167.2 137 65.7
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 2.3e-39 166.4 188 50.0
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 1.1e-38 164.1 125 69.6
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 5.7e-38 161.8 136 64.0
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 8.2e-37 157.9 164 54.9
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 1.1e-36 157.5 155 58.1
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 9.0e-36 154.5 134 61.2
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 2.6e-35 152.9 104 75.0
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 2.6e-35 152.9 131 60.3
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 7.7e-35 151.4 196 50.0
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 3.8e-34 149.1 100 74.0
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 4.2e-33 145.6 162 54.9
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 1.3e-26 124.0 217 37.3
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 6.5e-26 121.7 133 48.1
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 5.7e-22 108.6 98 66.3
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 7.0e-20 101.7 62 83.9
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 3.2e-17 92.8 144 38.9
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 3.6e-16 89.4 88 54.5
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 4.4e-14 82.4 116 39.7
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 2.7e-08 63.2 40 72.5
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 2.7e-08 63.2 35 88.6
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 1.8e-07 60.5 39 66.7


User provided reference genes

Program Settings