Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 1.3e-166 589.7 314 100.0
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 1.9e-157 559.3 316 95.6
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 2.4e-80 303.1 310 57.1
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 3.4e-74 282.7 301 55.5
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 4.9e-73 278.9 281 54.8
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 9.2e-72 274.6 305 52.5
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 3.5e-71 272.7 325 48.9
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 6.0e-71 271.9 301 54.5
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 5.1e-70 268.9 302 54.0
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 2.5e-69 266.5 339 47.8
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 5.6e-69 265.4 327 49.2
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 3.6e-68 262.7 308 52.6
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 8.1e-68 261.5 300 50.7
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.5e-66 257.3 311 49.8
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 3.4e-66 256.1 302 51.7
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 4.4e-66 255.8 306 52.3
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 7.6e-66 255.0 302 50.0
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 7.6e-66 255.0 301 51.2
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 1.3e-65 254.2 327 47.4
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 2.2e-65 253.4 324 47.2
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 2.9e-65 253.1 308 50.0
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 2.9e-65 253.1 301 49.8
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 3.8e-65 252.7 304 49.7
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 1.1e-64 251.1 342 45.3
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 1.4e-64 250.8 287 49.8
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 1.9e-64 250.4 304 49.7
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 3.2e-64 249.6 286 50.0
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 3.2e-64 249.6 301 50.5
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 5.4e-64 248.8 299 50.5
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 1.2e-63 247.7 302 51.7
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 2.1e-63 246.9 263 51.7
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 2.7e-63 246.5 304 49.7
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 3.5e-63 246.1 302 48.3
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.0e-62 244.6 304 46.4
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.7e-62 243.8 271 49.8
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 1.7e-62 243.8 301 50.2
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.7e-62 243.8 296 46.3
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.3e-62 243.4 308 47.4
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 5.1e-62 242.3 325 46.5
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 5.1e-62 242.3 306 46.4
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.1e-61 241.1 304 47.7
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 1.9e-61 240.4 303 47.9
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.9e-61 240.4 277 48.4
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 2.5e-61 240.0 369 45.3
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 3.3e-61 239.6 311 48.2
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 4.3e-61 239.2 294 47.6
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 1.3e-60 237.7 304 47.0
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 1.6e-60 237.3 299 46.2
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 2.8e-60 236.5 327 45.6
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 4.8e-60 235.7 301 46.8
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 4.8e-60 235.7 303 47.5
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 4.8e-60 235.7 277 48.4
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 4.8e-60 235.7 305 46.9
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 8.1e-60 235.0 301 46.8
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 8.1e-60 235.0 306 46.1
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 1.1e-59 234.6 310 47.7
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 1.4e-59 234.2 302 48.0
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 1.8e-59 233.8 298 46.6
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.4e-59 233.4 277 47.3
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 5.3e-59 232.3 301 48.2
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 9.0e-59 231.5 318 45.6
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 1.2e-58 231.1 304 46.7
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 2.0e-58 230.3 304 47.4
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.6e-58 229.9 277 47.7
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 3.4e-58 229.6 300 47.3
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 5.8e-58 228.8 297 45.8
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 9.9e-58 228.0 306 48.7
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 1.3e-57 227.6 302 45.4
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 3.8e-57 226.1 294 47.6
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 4.9e-57 225.7 310 44.2
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 4.9e-57 225.7 302 46.0
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 4.9e-57 225.7 294 45.9
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 6.4e-57 225.3 310 46.5
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 8.4e-57 224.9 301 46.2
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 8.4e-57 224.9 296 44.9
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 1.1e-56 224.6 299 45.8
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 5.4e-56 222.2 326 42.0
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 7.1e-56 221.9 306 46.1
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 9.3e-56 221.5 254 48.0
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 3.5e-55 219.5 299 46.2
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 3.5e-55 219.5 300 44.3
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.5e-55 219.5 309 45.3
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.3e-53 213.0 230 50.4
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 3.3e-53 213.0 292 44.5
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 4.3e-53 212.6 336 43.2
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 7.4e-53 211.8 315 40.6
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 1.6e-52 210.7 293 42.7
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 1.1e-51 208.0 307 42.3
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 1.1e-51 208.0 355 40.6
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 2.4e-51 206.8 242 52.1
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 3.1e-51 206.5 309 42.7
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 3.1e-51 206.5 294 44.6
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 6.9e-51 205.3 325 40.0
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 1.2e-50 204.5 346 38.2
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 1.5e-50 204.1 228 53.5
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 2.0e-50 203.8 307 42.3
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 3.4e-50 203.0 225 48.9
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 4.5e-50 202.6 301 41.5
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 4.5e-50 202.6 309 42.1
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 5.8e-50 202.2 280 45.4
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 9.9e-50 201.4 306 43.5
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 1.3e-49 201.1 297 42.4
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 5.5e-48 195.7 306 40.5
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 9.3e-48 194.9 304 40.5
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 9.3e-48 194.9 250 46.4
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 1.2e-47 194.5 304 40.5
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 2.1e-47 193.7 300 40.3
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 2.7e-47 193.4 311 40.5
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 7.9e-47 191.8 274 42.0
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.0e-46 191.4 251 44.2
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 1.0e-46 191.4 292 42.8
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 1.3e-46 191.0 306 40.5
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 5.6e-45 185.7 305 40.3
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 2.8e-44 183.3 305 40.0
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 3.7e-44 183.0 303 39.9
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 6.2e-44 182.2 300 43.0
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 8.1e-44 181.8 184 56.5
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 5.3e-43 179.1 236 44.5
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 6.9e-43 178.7 236 44.5
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 2.6e-42 176.8 308 38.3
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 3.8e-41 172.9 294 39.5
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 6.5e-41 172.2 308 39.3
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 1.4e-40 171.0 224 47.8
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 7.1e-40 168.7 252 42.5
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 9.3e-40 168.3 255 43.5
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 1.5e-37 161.0 312 37.8
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 6.3e-36 155.6 184 49.5
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.0e-33 148.3 135 53.3
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 6.5e-33 145.6 306 33.3
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.1e-32 144.8 221 43.9
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 1.2e-31 141.4 304 34.5
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 6.7e-30 135.6 290 34.1
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 3.3e-29 133.3 186 42.5
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 2.2e-28 130.6 225 33.8
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 6.3e-28 129.0 266 31.6
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 8.2e-28 128.6 151 41.1
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 2.0e-21 107.5 154 44.8
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 3.3e-21 106.7 168 42.9
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 1.8e-19 100.9 185 39.5
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 3.8e-17 93.2 134 36.6
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 8.5e-17 92.0 187 34.8
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 3.9e-14 83.2 246 29.3
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 3.9e-14 83.2 193 31.1
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 3.3e-13 80.1 248 28.6
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 3.3e-13 80.1 74 55.4
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 2.8e-12 77.0 189 33.9
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 6.3e-12 75.9 93 51.6
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 6.3e-12 75.9 112 33.0
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 2.2e-09 67.4 228 24.6
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 1.2e-07 61.6 99 40.4
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 2.1e-07 60.8 71 49.3


User provided reference genes

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