Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 0.0e+00 1470.3 769 100.0
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 0.0e+00 1101.3 662 86.9
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 2.4e-278 962.2 766 66.6
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 1.1e-270 936.8 771 64.9
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 6.7e-265 917.5 763 64.1
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 9.3e-259 897.1 766 61.4
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.3e-247 860.1 765 60.1
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 5.3e-246 854.7 769 60.2
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 7.2e-243 844.3 763 56.6
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 7.2e-243 844.3 768 58.3
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 6.1e-242 841.3 768 58.3
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 3.0e-241 839.0 769 58.0
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 3.1e-238 828.9 767 58.0
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.9e-235 819.7 764 55.2
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 1.9e-235 819.7 767 57.4
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 7.2e-235 817.8 745 58.3
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.6e-234 816.6 785 56.8
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.0e-233 813.9 768 56.0
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 3.0e-233 812.4 766 57.3
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 1.5e-232 810.1 767 56.6
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 7.4e-232 807.7 768 56.5
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 1.3e-231 807.0 765 56.7
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 2.8e-231 805.8 810 54.0
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 3.7e-231 805.4 767 57.0
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 5.3e-230 801.6 741 58.0
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 7.7e-229 797.7 763 56.9
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 2.9e-228 795.8 766 54.8
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.9e-227 793.1 780 55.6
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 2.5e-227 792.7 765 56.1
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 2.1e-226 789.6 765 54.9
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 2.7e-226 789.3 767 55.3
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 6.1e-226 788.1 767 55.7
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 6.1e-226 788.1 766 55.2
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 3.0e-225 785.8 764 55.9
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 7.4e-224 781.2 763 55.6
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 9.7e-224 780.8 764 53.1
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 4.8e-223 778.5 766 54.6
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.8e-222 776.5 767 53.8
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.4e-222 776.2 773 53.6
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 9.1e-222 774.2 766 53.7
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 2.0e-221 773.1 767 53.8
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 2.0e-221 773.1 767 52.5
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.5e-221 771.9 775 54.6
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 1.3e-220 770.4 764 54.7
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 1.7e-220 770.0 778 52.8
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 3.8e-220 768.8 767 54.4
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 1.5e-219 766.9 721 58.0
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 2.5e-219 766.1 767 53.1
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 2.1e-218 763.1 771 53.3
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 3.6e-218 762.3 766 52.3
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 4.7e-218 761.9 763 52.7
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 4.0e-217 758.8 770 53.6
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 6.7e-217 758.1 765 51.8
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 8.8e-217 757.7 761 55.7
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 3.3e-216 755.7 770 54.2
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 2.8e-215 752.7 770 53.8
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 8.2e-215 751.1 770 53.4
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 7.7e-213 744.6 767 53.6
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 1.3e-212 743.8 717 55.6
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 5.5e-211 738.4 772 52.3
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 7.2e-211 738.0 767 52.5
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 2.7e-210 736.1 765 53.5
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 2.7e-210 736.1 769 52.4
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 2.3e-209 733.0 788 49.5
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 6.8e-209 731.5 770 52.5
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 8.8e-209 731.1 769 52.0
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 9.8e-208 727.6 770 52.9
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 1.7e-207 726.9 791 52.0
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 4.8e-207 725.3 765 51.5
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 1.8e-206 723.4 790 50.9
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 2.0e-205 719.9 767 51.5
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 2.7e-205 719.5 792 50.4
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.2e-204 716.5 767 51.8
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 6.5e-204 714.9 741 52.9
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 3.2e-203 712.6 811 48.6
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 3.2e-203 712.6 750 53.5
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 4.2e-203 712.2 776 50.9
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 1.3e-199 700.7 785 50.1
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 1.3e-199 700.7 692 55.1
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 1.1e-198 697.6 787 49.4
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 3.5e-197 692.6 770 49.4
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 7.3e-195 684.9 744 52.2
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 1.2e-192 677.6 577 61.2
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 4.4e-192 675.6 738 52.0
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 7.5e-192 674.9 767 48.9
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 7.5e-192 674.9 768 49.6
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.7e-191 673.7 768 50.1
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.3e-188 663.3 574 59.6
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 9.5e-187 657.9 729 51.7
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 3.4e-184 649.4 718 50.3
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 3.7e-183 646.0 568 60.6
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 8.3e-183 644.8 736 50.3
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.3e-180 637.5 566 59.2
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 2.1e-178 630.2 566 58.8
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 2.8e-178 629.8 568 57.0
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 3.1e-177 626.3 569 58.0
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 6.8e-177 625.2 574 57.8
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 2.4e-174 616.7 637 53.5
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 2.4e-169 600.1 516 61.2
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 8.9e-169 598.2 764 46.5
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.2e-166 589.7 460 66.7
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 4.1e-166 589.3 531 58.9
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 2.1e-165 587.0 786 43.1
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.1e-163 581.3 528 59.8
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.2e-162 577.8 714 46.6
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 7.8e-157 558.5 768 43.9
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 9.6e-155 551.6 642 50.0
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 4.0e-153 546.2 585 49.9
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.4e-150 537.7 531 54.4
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 6.5e-127 459.1 509 49.9
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 7.9e-117 425.6 426 53.1
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 3.1e-113 413.7 832 32.9
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 1.4e-108 398.3 333 60.4
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 6.5e-103 379.4 288 67.4
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 5.7e-99 366.3 387 52.5
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 2.7e-96 357.5 326 57.4
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 1.4e-92 345.1 285 64.2
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 2.6e-91 340.9 284 59.9
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.2e-88 332.0 497 41.2
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 1.2e-88 332.0 543 39.6
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.7e-87 328.2 776 31.1
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 5.0e-87 326.6 746 30.3
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 8.3e-82 309.3 478 40.0
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 3.3e-78 297.4 270 58.9
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 3.0e-71 274.2 230 60.9
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 3.0e-63 247.7 209 62.7
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 3.6e-61 240.7 342 38.3
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 5.2e-60 236.9 177 65.5
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 9.2e-57 226.1 753 26.3
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.8e-51 206.8 422 36.7
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.8e-50 204.1 420 36.4
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 8.4e-50 203.0 205 51.2
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 7.3e-38 163.3 140 62.9
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 1.8e-36 158.7 195 46.2
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 2.1e-32 145.2 247 37.7
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 2.8e-29 134.8 252 36.1
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 6.0e-24 117.1 109 59.6
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 2.1e-21 108.6 196 34.2
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 3.7e-21 107.8 163 39.3
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 3.4e-19 101.3 85 60.0
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.4e-19 101.3 191 37.7
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.7e-18 99.0 86 60.5
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 2.2e-18 98.6 84 59.5
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.2e-17 94.7 72 66.7
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.3e-14 84.7 68 61.8
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 2.2e-13 82.0 107 37.4
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 2.6e-11 75.1 116 39.7


User provided reference genes

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