Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 0.0e+00 1261.9 631 100.0
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 0.0e+00 1231.5 631 97.5
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.5e-254 882.9 614 72.0
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 4.6e-248 861.3 614 71.0
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.2e-240 836.6 612 69.3
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 2.2e-237 825.9 608 68.3
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.4e-233 813.1 613 67.9
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 7.2e-233 810.8 627 66.2
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 6.1e-232 807.7 617 65.0
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 8.0e-232 807.4 627 65.9
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 7.4e-230 800.8 622 64.6
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 2.2e-229 799.3 628 65.1
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 4.8e-229 798.1 610 67.9
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 5.9e-227 791.2 616 64.3
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 1.6e-224 783.1 617 64.7
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 2.1e-224 782.7 599 67.3
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 8.0e-224 780.8 621 63.0
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 1.8e-223 779.6 616 64.4
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 6.7e-223 777.7 613 63.6
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.6e-222 775.8 620 63.4
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.6e-222 775.8 629 61.7
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 4.4e-222 775.0 613 63.5
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 6.3e-221 771.2 624 63.0
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 8.2e-221 770.8 619 62.8
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 1.4e-220 770.0 616 64.0
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.4e-220 770.0 614 62.4
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 7.0e-220 767.7 617 63.4
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 7.0e-220 767.7 620 62.7
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 7.0e-220 767.7 615 62.9
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 1.7e-218 763.1 617 63.0
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 5.5e-217 758.1 622 61.1
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 7.2e-217 757.7 573 66.3
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 9.4e-217 757.3 617 62.6
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 2.7e-216 755.7 620 63.2
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 4.7e-216 755.0 616 61.9
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 6.1e-216 754.6 614 61.2
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 1.4e-215 753.4 614 61.2
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 2.0e-214 749.6 573 65.4
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 2.6e-214 749.2 619 61.7
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 5.7e-214 748.0 623 62.3
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 2.8e-213 745.7 606 62.7
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 2.8e-213 745.7 616 61.5
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 4.8e-213 745.0 609 62.4
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 1.4e-212 743.4 617 61.9
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 4.1e-212 741.9 616 60.6
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 7.0e-212 741.1 615 60.7
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 2.0e-211 739.6 618 61.0
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 1.3e-210 736.9 618 60.5
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 5.0e-210 734.9 600 63.0
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.5e-209 733.4 613 61.2
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 3.3e-209 732.3 622 59.2
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 2.8e-208 729.2 616 59.6
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 4.7e-208 728.4 610 61.0
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 8.0e-208 727.6 614 60.4
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.4e-207 726.9 615 60.3
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 2.3e-207 726.1 631 61.5
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 8.9e-207 724.2 616 58.4
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 8.9e-207 724.2 616 59.9
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 1.2e-206 723.8 620 58.9
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.0e-206 723.0 618 60.2
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 2.6e-206 722.6 625 59.7
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 9.8e-206 720.7 624 58.0
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 1.7e-205 719.9 613 58.6
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 1.8e-204 716.5 622 58.0
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 7.0e-204 714.5 624 59.9
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 2.0e-203 713.0 621 58.3
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 2.0e-203 713.0 617 59.3
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 4.5e-203 711.8 628 58.1
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 3.8e-202 708.8 601 59.2
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.1e-201 707.2 615 60.0
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.5e-201 706.8 666 55.1
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 2.5e-201 706.1 615 59.0
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.2e-200 703.7 625 58.6
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 2.1e-200 703.0 620 57.6
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 4.7e-200 701.8 622 58.4
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.3e-199 699.5 673 55.3
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 3.1e-199 699.1 614 58.0
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 3.1e-199 699.1 621 57.8
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 8.9e-199 697.6 620 57.3
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 2.6e-198 696.0 636 56.4
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 6.4e-197 691.4 604 59.6
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.9e-196 689.9 604 59.8
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.4e-196 689.5 630 57.3
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.0e-194 684.1 618 57.9
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.5e-193 680.2 623 57.8
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 3.3e-193 679.1 624 56.6
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 1.4e-191 673.7 735 51.3
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.8e-191 673.3 668 53.1
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.2e-190 670.6 625 56.2
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 7.5e-190 667.9 597 59.0
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.9e-189 665.2 633 55.6
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 1.9e-185 653.3 612 56.7
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 6.2e-184 648.3 639 54.0
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 2.2e-181 639.8 652 52.8
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.1e-180 637.5 732 48.6
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 1.9e-180 636.7 678 51.2
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 3.3e-177 625.9 622 51.6
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.2e-176 624.0 625 54.9
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.4e-175 619.8 619 53.5
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 2.6e-174 616.3 522 61.3
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 8.7e-170 601.3 598 52.0
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 4.3e-169 599.0 617 52.4
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 9.3e-164 581.3 600 50.8
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 5.6e-161 572.0 600 49.8
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 2.7e-155 553.1 647 51.0
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 4.2e-148 529.3 520 53.1
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 1.1e-127 461.5 432 56.2
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.2e-123 448.0 412 57.0
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 3.7e-120 436.4 336 61.0
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.3e-119 432.6 410 56.3
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 1.1e-116 424.9 321 64.2
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.2e-116 423.3 403 55.8
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 8.0e-115 418.7 448 51.8
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.7e-112 409.8 410 54.1
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.4e-111 407.1 397 53.4
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.2e-108 395.6 412 52.4
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.4e-108 395.2 412 52.4
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.7e-105 386.0 414 51.4
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 2.0e-102 377.5 445 46.3
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.8e-97 358.6 402 50.0
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.0e-93 346.3 413 47.2
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 8.0e-91 339.0 572 35.1
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 1.8e-87 327.8 526 35.6
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 4.5e-86 323.2 204 77.0
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.6e-73 280.8 554 31.2
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 8.3e-72 275.8 527 31.9
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.5e-68 265.0 513 34.3
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 7.6e-65 252.7 260 51.9
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 3.9e-53 213.8 167 61.7
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.8e-51 207.6 238 51.7
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 1.1e-50 205.7 522 27.2
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.4e-50 205.3 238 51.7
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 9.0e-50 202.6 424 33.7
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 3.4e-49 200.7 206 52.9
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.8e-34 151.8 103 68.0
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 5.8e-33 146.7 134 56.0
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.1e-31 142.5 98 69.4
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 1.5e-28 132.1 108 58.3
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.6e-27 128.6 97 62.9
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.8e-26 125.2 104 56.7
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.6e-25 121.3 93 61.3
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 3.9e-21 107.5 223 34.5
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.5e-20 104.8 74 67.6
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 4.3e-20 104.0 85 55.3
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 4.3e-20 104.0 87 55.2
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 5.7e-20 103.6 94 52.1
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 3.2e-15 87.8 68 57.4
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 3.2e-15 87.8 68 57.4
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 6.1e-14 83.6 151 40.4
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 1.0e-13 82.8 68 55.9
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 3.9e-13 80.9 96 47.9
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.1e-10 72.8 44 68.2
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.1e-10 72.8 44 68.2
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 9.1e-10 69.7 48 64.6
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 3.8e-08 64.3 379 21.9
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.4e-07 62.4 55 54.5
TPR.G30250 Trifolium pratense HOM05D000855 ORTHO05D008530 1.6e-06 58.9 186 25.3
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 2.1e-06 58.5 52 51.9
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 3.6e-06 57.8 196 23.0
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 3.6e-06 57.8 190 25.8


User provided reference genes

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