Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 9.0e-226 786.6 389 100.0
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.8e-202 709.1 389 90.5
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 2.6e-201 705.3 396 89.1
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 2.5e-167 592.4 396 73.7
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 1.6e-166 589.7 393 73.5
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 2.6e-164 582.4 390 73.1
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 2.6e-164 582.4 402 72.1
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 2.6e-164 582.4 394 73.4
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 4.4e-164 581.6 352 79.0
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 5.7e-164 581.3 403 71.5
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 5.7e-164 581.3 401 71.8
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 7.5e-164 580.9 381 73.8
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 7.5e-164 580.9 402 71.6
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.3e-163 580.1 398 71.4
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 3.7e-163 578.6 364 76.4
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 1.1e-162 577.0 403 70.2
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.4e-162 576.6 397 72.5
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 2.4e-162 575.9 402 71.9
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.1e-162 575.5 394 73.1
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 4.1e-162 575.1 402 70.1
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 4.1e-162 575.1 401 71.8
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 5.3e-162 574.7 403 69.7
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.2e-161 573.5 398 70.6
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.0e-161 572.8 394 72.6
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 2.7e-161 572.4 394 72.6
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 2.7e-161 572.4 342 78.7
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 2.7e-161 572.4 394 71.8
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 4.5e-161 571.6 335 79.7
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 5.9e-161 571.2 398 70.4
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 7.7e-161 570.9 401 71.8
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.7e-160 569.7 362 76.0
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.7e-160 569.7 422 69.0
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.9e-160 568.9 335 79.4
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 2.9e-160 568.9 394 71.3
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 1.1e-159 567.0 385 72.2
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 1.1e-159 567.0 385 72.2
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 1.1e-159 567.0 400 72.0
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 1.1e-159 567.0 332 79.8
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 1.5e-159 566.6 437 67.0
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 1.9e-159 566.2 383 72.3
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.9e-159 566.2 394 71.6
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 2.5e-159 565.8 333 80.5
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 4.2e-159 565.1 345 78.0
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 4.2e-159 565.1 396 71.2
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 4.2e-159 565.1 331 80.1
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 7.2e-159 564.3 404 69.8
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.6e-158 563.1 335 78.8
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 2.7e-158 562.4 334 78.7
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 2.7e-158 562.4 390 71.0
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 4.7e-158 561.6 388 71.6
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 6.1e-158 561.2 384 71.1
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 1.0e-157 560.5 398 68.8
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 2.3e-157 559.3 389 71.5
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 5.2e-157 558.1 335 77.9
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 5.2e-157 558.1 384 70.6
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 5.2e-157 558.1 421 67.9
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 5.2e-157 558.1 395 70.1
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 6.8e-157 557.8 333 79.3
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 6.8e-157 557.8 401 70.1
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 8.8e-157 557.4 408 67.9
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 8.8e-157 557.4 422 65.9
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 1.5e-156 556.6 331 79.5
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 2.6e-156 555.8 380 70.8
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 2.6e-156 555.8 398 70.4
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 5.7e-156 554.7 376 73.7
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 9.8e-156 553.9 349 75.9
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.7e-155 553.1 387 71.3
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 1.7e-155 553.1 387 70.5
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 2.8e-155 552.4 352 75.9
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 6.3e-155 551.2 383 71.0
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 6.3e-155 551.2 336 77.7
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 8.3e-155 550.8 400 68.2
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 1.4e-154 550.1 389 70.4
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 1.4e-154 550.1 388 68.8
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 1.8e-154 549.7 389 69.7
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 3.1e-154 548.9 401 68.3
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 7.0e-154 547.7 387 70.0
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 1.6e-153 546.6 390 67.9
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 5.9e-153 544.7 347 72.3
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 8.6e-152 540.8 375 69.6
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 2.1e-150 536.2 366 72.1
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 2.1e-150 536.2 333 75.1
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 2.1e-150 536.2 370 72.7
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 3.6e-150 535.4 333 75.4
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 3.6e-150 535.4 389 68.4
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 8.0e-150 534.3 330 76.1
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 4.0e-149 531.9 400 69.0
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 6.8e-149 531.2 337 75.1
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 6.8e-149 531.2 341 76.0
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 8.9e-149 530.8 296 84.1
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 1.2e-148 530.4 350 73.4
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.5e-148 530.0 379 66.8
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 2.6e-148 529.3 343 73.2
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 3.4e-148 528.9 373 68.9
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 3.4e-148 528.9 330 75.8
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 5.7e-148 528.1 385 68.1
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 9.8e-148 527.3 379 68.6
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 9.8e-148 527.3 386 67.9
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 2.2e-147 526.2 385 68.1
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 2.2e-147 526.2 343 72.3
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 2.8e-147 525.8 377 68.4
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 1.1e-146 523.9 376 67.8
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 3.5e-145 518.8 346 73.1
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 1.0e-144 517.3 390 67.4
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 1.0e-144 517.3 390 67.4
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 2.5e-143 512.7 353 70.8
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 3.3e-143 512.3 390 66.7
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.2e-142 510.4 343 70.0
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 1.4e-141 506.9 384 64.3
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 1.8e-141 506.5 346 68.2
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 3.1e-141 505.8 375 65.9
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 5.2e-141 505.0 369 67.8
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 6.8e-141 504.6 283 82.7
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-139 499.6 386 66.1
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 2.0e-137 493.0 298 75.8
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 1.3e-136 490.3 390 64.4
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 3.0e-136 489.2 296 76.7
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 3.0e-136 489.2 296 76.7
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 3.0e-136 489.2 333 70.0
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-135 486.5 323 72.1
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 1.1e-133 480.7 328 69.2
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 4.6e-129 465.3 333 66.4
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 6.0e-129 464.9 343 67.1
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-128 463.8 277 77.6
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 1.1e-125 454.1 274 77.0
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.2e-121 440.7 427 58.3
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 1.7e-120 436.8 329 65.3
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 3.3e-119 432.6 343 59.2
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 2.7e-113 412.9 336 61.9
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 9.9e-108 394.4 261 72.8
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.9e-106 390.2 321 58.9
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.3e-102 377.5 316 63.3
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 2.8e-102 376.3 316 57.3
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 2.1e-89 333.6 331 55.0
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 5.3e-85 318.9 187 80.2
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-82 311.2 299 56.5
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.1e-82 311.2 247 66.0
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.6e-81 307.4 246 66.3
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 2.3e-72 276.9 275 54.5
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.1e-71 274.6 205 67.3
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.5e-71 273.5 157 80.3
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 2.8e-62 243.4 145 75.2
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 2.9e-59 233.4 295 46.1
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-53 214.5 235 51.9
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-51 208.4 259 48.6
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-46 191.4 323 40.6
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-42 178.3 130 66.9
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 7.2e-42 175.6 169 58.0
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 7.2e-42 175.6 116 72.4
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-38 164.5 169 56.2
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-38 164.5 169 56.2
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 1.6e-36 157.9 122 67.2
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 3.0e-32 143.7 230 39.6
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.7e-30 136.7 159 50.9
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.7e-30 136.7 159 50.9
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 3.0e-19 100.5 168 34.5
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 5.6e-18 96.3 49 81.6
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 5.6e-18 96.3 49 81.6
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 6.6e-11 72.8 49 73.5
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 5.2e-08 63.2 48 64.6
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 5.8e-07 59.7 38 71.1
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 8.4e-06 55.8 43 60.5


User provided reference genes

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