Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 0.0e+00 1375.1 765 100.0
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 0.0e+00 1342.4 765 92.9
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.3e-265 919.8 786 61.8
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.7e-257 892.9 770 61.6
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 4.9e-252 874.8 772 59.2
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 4.8e-247 858.2 774 61.0
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 1.2e-245 853.6 766 57.2
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 1.4e-243 846.7 769 58.6
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 2.4e-238 829.3 711 61.5
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 1.2e-237 827.0 765 60.5
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.4e-237 825.5 765 57.1
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 1.4e-235 820.1 761 58.5
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 2.5e-235 819.3 766 55.6
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 1.8e-233 813.1 775 55.1
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 8.7e-233 810.8 718 59.7
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 2.1e-231 806.2 592 66.0
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 2.6e-229 799.3 765 56.7
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 7.6e-229 797.7 594 64.8
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 2.5e-227 792.7 588 65.6
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 3.2e-227 792.3 592 65.2
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 3.9e-225 785.4 594 64.5
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 1.9e-224 783.1 577 65.2
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 7.4e-224 781.2 773 54.3
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 1.6e-223 780.0 777 54.7
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 1.4e-222 776.9 578 65.1
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 5.3e-222 775.0 577 64.6
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 6.9e-222 774.6 577 65.3
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 4.5e-221 771.9 770 56.8
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 5.9e-221 771.5 594 64.0
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 5.9e-221 771.5 614 61.6
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 1.0e-220 770.8 769 56.4
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 1.0e-220 770.8 588 63.4
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 1.7e-220 770.0 774 57.4
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.7e-220 770.0 594 63.6
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 2.9e-220 769.2 585 63.2
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.4e-219 766.9 544 67.3
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 3.2e-219 765.8 586 63.8
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 6.1e-218 761.5 587 63.9
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 7.9e-218 761.1 766 53.4
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 2.5e-216 756.1 583 63.6
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 4.3e-216 755.4 591 62.1
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 5.7e-216 755.0 765 55.9
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 4.8e-215 751.9 773 52.0
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 2.4e-214 749.6 764 53.1
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 5.3e-214 748.4 587 61.8
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 1.0e-212 744.2 578 61.2
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.0e-212 744.2 769 52.8
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 6.5e-212 741.5 747 59.6
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 1.1e-211 740.7 766 59.8
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 1.6e-210 736.9 744 56.2
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 1.0e-209 734.2 728 55.4
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 5.7e-208 728.4 588 61.1
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 1.7e-207 726.9 587 60.8
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.8e-207 725.3 642 57.6
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 1.1e-206 724.2 749 52.9
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 3.5e-205 719.2 591 60.9
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 1.1e-203 714.1 764 52.2
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 1.5e-203 713.8 763 53.2
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 2.5e-203 713.0 759 52.6
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 1.2e-202 710.7 754 54.9
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 2.1e-202 709.9 761 52.3
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 2.7e-202 709.5 749 53.8
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 1.4e-201 707.2 747 51.5
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 2.6e-200 703.0 573 58.6
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 4.4e-200 702.2 768 51.2
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 3.7e-199 699.1 584 59.4
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.4e-198 696.4 618 57.9
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 2.0e-197 693.3 591 57.9
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 1.7e-196 690.3 702 51.7
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 3.2e-195 686.0 581 57.7
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 3.2e-195 686.0 518 64.3
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 2.7e-194 682.9 590 57.5
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.8e-193 680.2 504 65.9
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 1.8e-193 680.2 1055 40.7
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.7e-192 675.2 586 56.8
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 2.2e-191 673.3 518 62.0
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 6.3e-191 671.8 589 57.9
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.7e-186 656.4 586 55.6
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 3.6e-186 656.0 774 51.8
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 8.0e-186 654.8 590 59.5
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 1.0e-185 654.4 584 56.2
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 1.1e-182 644.4 587 55.0
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 3.1e-182 642.9 827 46.8
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 1.0e-177 627.9 586 55.5
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 3.0e-177 626.3 579 53.5
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.2e-174 616.3 595 53.8
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 2.3e-169 600.1 615 51.2
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.7e-167 594.0 635 49.8
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 3.5e-165 586.3 578 51.9
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 6.8e-161 572.0 723 44.8
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 5.8e-160 568.9 571 48.7
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 2.4e-158 563.5 593 54.3
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 3.0e-156 556.6 580 47.1
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 5.1e-156 555.8 531 53.9
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 4.0e-153 546.2 581 48.5
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 2.9e-151 540.0 394 67.8
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.4e-145 520.4 542 54.6
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 4.0e-145 519.6 617 43.9
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 7.6e-144 515.4 378 66.9
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 4.5e-136 489.6 403 60.8
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 2.7e-125 453.8 696 40.8
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.5e-123 448.0 531 45.4
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 1.3e-119 434.9 360 59.7
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 9.3e-118 428.7 309 65.7
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.0e-116 425.2 324 63.6
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 7.4e-115 419.1 293 65.5
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.0e-112 411.0 329 60.2
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 1.2e-104 385.2 457 51.9
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.9e-104 382.9 539 43.2
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 1.5e-99 368.2 495 40.2
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 1.3e-98 365.2 430 43.0
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 4.1e-97 360.1 519 38.9
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 7.9e-93 345.9 483 41.2
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 1.5e-86 325.1 351 49.6
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 2.4e-81 307.8 310 54.5
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 3.1e-81 307.4 490 38.0
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 8.8e-76 289.3 273 54.2
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 2.8e-74 284.3 658 30.1
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.4e-73 282.0 510 37.1
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 7.0e-65 253.1 207 58.9
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.3e-63 248.1 154 75.3
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 3.6e-61 240.7 156 72.4
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.0e-55 222.6 147 69.4
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 3.3e-54 217.6 287 41.1
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 2.1e-53 214.9 190 55.8
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.1e-53 214.9 135 71.9
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 2.8e-53 214.5 198 58.6
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 4.0e-52 210.7 178 53.9
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 4.4e-51 207.2 147 65.3
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 7.5e-51 206.5 194 55.2
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 3.0e-47 194.5 300 42.0
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 3.3e-46 191.0 191 51.3
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 2.8e-45 188.0 286 42.0
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 2.6e-43 181.4 217 47.0
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 1.3e-39 169.1 300 37.7
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.6e-35 154.8 92 78.3
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 3.8e-34 151.0 378 37.0
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 4.9e-34 150.6 118 65.3
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 6.0e-32 143.7 84 79.8
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 2.3e-31 141.7 285 33.7
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 7.3e-30 136.7 261 33.7
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 3.4e-27 127.9 83 68.7
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 7.1e-25 120.2 90 58.9
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 9.3e-25 119.8 299 30.1
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.1e-22 112.8 106 59.4
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.9e-22 112.1 107 54.2
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.6e-21 109.0 87 60.9
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.4e-20 105.1 91 62.6
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 2.6e-19 101.7 70 70.0
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 9.9e-19 99.8 94 55.3
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 9.9e-19 99.8 70 68.6
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 8.7e-15 86.7 78 56.4
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.4e-11 74.7 97 43.3
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 2.5e-06 58.5 43 62.8


User provided reference genes

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