Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 0.0e+00 1207.2 663 100.0
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 0.0e+00 1128.2 663 89.9
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.8e-210 736.5 654 61.0
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 6.9e-210 734.6 655 60.3
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 1.4e-207 726.9 655 59.8
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 1.5e-204 716.8 653 59.4
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 3.7e-203 712.2 662 58.6
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 6.2e-203 711.4 652 59.7
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.3e-200 703.7 656 58.7
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 2.2e-200 703.0 670 56.9
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 3.8e-200 702.2 671 58.1
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 1.1e-199 700.7 670 57.5
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 1.1e-199 700.7 654 57.6
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 1.2e-198 697.2 656 57.0
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 2.7e-198 696.0 657 60.1
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 6.0e-198 694.9 656 56.9
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 1.1e-196 690.6 657 58.1
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.1e-196 690.6 659 57.8
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 1.9e-196 689.9 450 85.6
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 4.3e-196 688.7 657 58.8
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 6.9e-194 681.4 647 56.7
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 9.0e-194 681.0 656 57.3
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.2e-193 680.6 656 56.6
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 1.5e-193 680.2 659 56.9
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 5.0e-192 675.2 659 57.2
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 1.9e-191 673.3 657 55.9
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 3.2e-191 672.5 651 56.5
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 6.1e-190 668.3 649 56.9
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 6.1e-190 668.3 651 56.1
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 1.8e-189 666.8 651 57.6
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 6.7e-189 664.8 655 55.9
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 6.7e-189 664.8 657 56.8
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 6.7e-189 664.8 651 55.9
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 1.5e-188 663.7 649 54.9
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 1.5e-188 663.7 651 55.3
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 5.7e-188 661.8 657 56.6
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 7.4e-188 661.4 654 57.6
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 7.4e-188 661.4 651 55.3
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 8.2e-187 657.9 653 56.0
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.8e-186 656.8 656 56.1
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 5.3e-186 655.2 643 55.8
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 2.0e-185 653.3 659 54.0
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 2.6e-185 652.9 649 54.7
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 7.7e-185 651.4 663 54.3
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 7.7e-185 651.4 653 53.8
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 1.0e-184 651.0 649 55.8
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.0e-184 651.0 679 52.9
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 2.2e-184 649.8 655 54.8
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 3.8e-184 649.0 655 54.4
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 3.8e-184 649.0 649 54.5
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 3.2e-183 646.0 655 53.7
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 7.2e-183 644.8 655 54.2
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 2.1e-182 643.3 655 54.2
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 3.6e-182 642.5 652 55.1
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 3.0e-181 639.4 655 54.7
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 3.9e-181 639.0 654 53.4
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 3.9e-181 639.0 658 52.4
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 6.7e-181 638.3 658 53.2
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 2.6e-180 636.3 656 52.3
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 2.2e-179 633.3 646 54.0
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 6.3e-179 631.7 655 53.7
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 8.2e-179 631.3 693 52.1
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 1.8e-178 630.2 657 53.1
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.4e-178 629.8 608 56.7
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 2.4e-178 629.8 656 53.0
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 3.1e-178 629.4 628 55.9
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 5.3e-178 628.6 646 52.2
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 1.2e-177 627.5 656 53.4
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 2.0e-177 626.7 649 52.9
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 2.0e-177 626.7 649 52.9
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 7.7e-177 624.8 655 52.4
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 7.7e-177 624.8 655 52.2
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 2.1e-174 616.7 653 52.5
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 3.3e-172 609.4 654 51.8
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 7.4e-172 608.2 653 52.1
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 1.1e-170 604.4 655 51.0
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 2.2e-168 596.7 652 52.3
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 5.0e-168 595.5 668 50.7
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.5e-167 594.0 563 57.7
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 3.2e-167 592.8 649 52.2
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 7.2e-167 591.7 585 55.7
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.0e-165 587.8 654 51.8
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.2e-164 584.3 655 50.2
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 1.3e-163 580.9 495 60.0
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 2.8e-163 579.7 688 48.3
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 5.2e-157 558.9 689 48.2
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.7e-155 553.9 654 50.2
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 2.8e-150 536.6 544 51.1
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 3.6e-150 536.2 661 47.5
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 3.4e-148 529.6 527 54.5
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 7.5e-148 528.5 656 46.3
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 2.2e-147 526.9 498 56.2
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.6e-145 520.8 710 44.6
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 3.8e-144 516.2 532 54.1
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 5.6e-143 512.3 500 54.0
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.6e-137 494.2 552 51.4
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.9e-130 470.7 594 47.0
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.9e-127 460.7 489 54.6
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 9.2e-122 441.8 659 41.4
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 2.4e-106 390.6 761 35.6
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 9.6e-103 378.6 691 37.5
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 2.1e-102 377.5 534 43.8
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.7e-97 360.5 378 55.8
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 3.1e-93 347.1 295 57.6
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 7.6e-92 342.4 333 55.9
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 3.5e-89 333.6 581 38.4
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 1.0e-88 332.0 660 35.2
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 6.7e-80 302.8 280 61.8
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.1e-77 295.4 333 52.9
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 4.5e-76 290.0 342 50.0
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 1.0e-72 278.9 277 57.4
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 4.4e-63 246.9 287 47.0
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 1.3e-62 245.4 276 51.8
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 5.9e-60 236.5 332 44.6
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 5.0e-59 233.4 423 39.7
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 4.8e-54 216.9 153 66.0
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 5.5e-50 203.4 196 54.6
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 2.5e-42 177.9 152 58.6
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 5.2e-40 170.2 384 35.4
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 7.0e-37 159.8 198 47.5
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 1.3e-35 155.6 384 30.2
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 4.7e-33 147.1 112 61.6
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 6.1e-33 146.7 677 27.0
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 1.8e-32 145.2 176 50.6
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.0e-24 119.4 155 40.6
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 2.3e-19 101.7 130 52.3
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 3.0e-19 101.3 159 42.8
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 3.4e-15 87.8 94 50.0
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 3.4e-15 87.8 64 67.2
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 4.1e-13 80.9 64 62.5
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 9.2e-13 79.7 112 45.5
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 2.1e-12 78.6 55 72.7
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 1.0e-11 76.3 112 44.6
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.0e-11 76.3 49 73.5
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 8.1e-09 66.6 46 63.0
Cre03.g145667 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 7.5e-07 60.1 99 37.4


User provided reference genes

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