Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 7.1e-270 933.3 469 100.0
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 4.5e-256 887.5 469 95.9
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 7.4e-142 508.1 474 57.4
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 3.4e-139 499.2 468 56.4
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 1.1e-134 484.2 490 54.3
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 9.7e-134 481.1 476 54.0
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 4.8e-133 478.8 472 54.7
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 5.3e-132 475.3 463 54.6
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 5.9e-131 471.9 485 52.2
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 6.5e-130 468.4 479 54.1
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 9.4e-129 464.5 469 53.5
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.6e-128 463.8 473 51.8
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 2.0e-126 456.8 474 52.3
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.3e-126 456.1 474 51.9
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.4e-126 455.7 474 51.9
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.7e-126 455.3 474 51.7
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 9.7e-126 454.5 469 52.5
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.7e-125 453.8 469 52.2
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 1.7e-125 453.8 469 52.0
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 1.2e-123 447.6 481 51.1
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 1.6e-123 447.2 467 51.2
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 3.5e-123 446.0 483 49.9
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 7.7e-123 444.9 464 52.2
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 8.5e-122 441.4 396 56.3
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.1e-121 441.0 470 50.9
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.1e-121 441.0 470 50.9
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 4.7e-120 435.6 480 51.0
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 1.0e-119 434.5 471 50.3
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 2.3e-119 433.3 480 50.8
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 5.2e-119 432.2 488 48.8
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 8.8e-119 431.4 475 50.5
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 4.4e-118 429.1 470 51.1
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 4.8e-117 425.6 476 49.4
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 1.8e-116 423.7 476 50.4
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 4.1e-116 422.5 472 48.7
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 5.3e-116 422.2 470 47.9
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 9.1e-116 421.4 475 49.1
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 1.5e-113 414.1 472 48.9
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 1.5e-113 414.1 468 47.6
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 1.9e-113 413.7 417 52.0
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 3.2e-113 412.9 479 46.6
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.2e-113 412.9 472 47.5
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 3.2e-113 412.9 471 49.7
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 2.7e-112 409.8 472 47.0
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.3e-111 406.8 469 46.9
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 2.3e-111 406.8 460 49.3
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 3.0e-111 406.4 472 48.7
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 3.0e-111 406.4 472 48.7
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 3.0e-111 406.4 376 55.9
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 3.0e-111 406.4 472 48.7
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 4.0e-111 406.0 468 47.9
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 1.5e-110 404.1 418 51.9
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 2.0e-110 403.7 462 48.7
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 1.3e-109 401.0 461 47.3
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 1.3e-109 401.0 462 48.3
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 8.3e-109 398.3 471 46.5
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 1.1e-108 397.9 469 48.2
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 2.4e-108 396.7 469 48.4
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 9.1e-108 394.8 472 47.2
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 1.2e-107 394.4 469 47.8
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 1.6e-107 394.0 465 46.0
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 1.6e-107 394.0 471 48.0
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 5.9e-107 392.1 473 48.2
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 7.7e-107 391.7 469 48.2
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 5.0e-106 389.0 417 52.5
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 8.6e-106 388.3 464 46.8
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 4.2e-105 386.0 464 46.6
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 6.1e-104 382.1 469 45.6
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 1.0e-103 381.3 411 52.8
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.4e-103 380.9 513 44.1
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 2.0e-102 377.1 477 47.4
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.6e-102 376.7 367 54.2
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 4.4e-102 375.9 467 45.2
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 5.7e-102 375.6 404 51.0
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 1.3e-101 374.4 367 51.8
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.3e-101 374.4 463 45.6
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 3.7e-101 372.9 465 46.7
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 1.6e-99 367.5 406 49.3
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 2.7e-99 366.7 404 49.8
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 5.9e-99 365.5 468 45.3
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.3e-98 363.6 499 42.9
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 2.8e-96 356.7 477 42.1
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 6.8e-95 352.1 468 44.9
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 8.9e-95 351.7 465 42.8
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 2.0e-91 340.5 304 58.2
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 3.5e-91 339.7 472 41.3
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 4.7e-88 329.3 413 46.2
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 8.3e-85 318.5 469 39.9
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 5.4e-84 315.8 473 40.0
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 9.2e-84 315.1 473 40.6
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 3.0e-82 310.1 473 39.3
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 8.6e-82 308.5 471 40.1
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 1.5e-81 307.8 472 39.4
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 2.1e-80 303.9 370 44.1
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 6.2e-80 302.4 475 40.6
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 5.2e-79 299.3 474 40.7
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 1.5e-78 297.7 429 42.4
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 3.4e-78 296.6 326 49.7
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 7.6e-78 295.4 343 50.4
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 9.9e-78 295.0 477 41.5
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 2.4e-76 290.4 472 37.9
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 4.6e-75 286.2 384 44.0
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 3.3e-73 280.0 561 33.9
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.1e-72 277.3 556 33.1
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.7e-69 267.7 441 37.4
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 3.8e-69 266.5 371 44.7
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 8.4e-69 265.4 403 38.5
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 2.7e-67 260.4 485 37.1
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.7e-67 260.4 469 37.1
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.2e-61 240.7 373 39.7
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 4.6e-59 233.0 273 47.3
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.3e-58 230.7 515 32.0
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.1e-58 229.6 459 33.1
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 6.9e-55 219.2 559 29.2
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 5.8e-54 216.1 148 68.9
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 2.3e-50 204.1 371 37.7
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 7.6e-46 189.1 258 40.3
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 3.2e-44 183.7 170 54.7
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 4.6e-43 179.9 483 29.6
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.8e-40 170.6 144 56.9
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.4e-39 167.5 432 31.7
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-39 165.6 177 49.2
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.6e-38 164.1 146 52.7
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.9e-37 160.6 156 48.7
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 6.1e-35 152.9 271 37.6
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 8.5e-29 132.5 219 37.0
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 3.2e-28 130.6 98 63.3
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.8e-24 117.5 156 39.7
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 2.4e-23 114.4 163 43.6
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 9.1e-23 112.5 126 50.8
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 2.1e-11 74.7 60 61.7
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 3.0e-10 70.9 75 50.7
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 5.7e-09 66.6 52 53.8
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 1.6e-06 58.5 41 65.9


User provided reference genes

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