Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G1278 Papaver somniferum HOM05D002969 ORTHO05D003308 4.6e-135 484.6 244 100.0
PSO447G0254 Papaver somniferum HOM05D002969 ORTHO05D003308 8.1e-100 367.5 251 78.1
PSO210G6259 Papaver somniferum HOM05D002969 ORTHO05D003308 1.1e-99 367.1 251 77.7
Nn7g36584 Nelumbo nucifera HOM05D002969 ORTHO05D003308 7.6e-82 307.8 252 62.7
TAR626G1632 Trochodendron aralioides HOM05D002969 ORTHO05D003308 5.0e-81 305.1 252 64.3
SEGI_24599 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 2.4e-75 286.2 250 59.2
Dinv30672 Davidia involucrata HOM05D002969 ORTHO05D003308 9.1e-75 284.3 252 60.3
Dinv34332 Davidia involucrata HOM05D002969 ORTHO05D003308 9.1e-75 284.3 252 60.3
Dinv04036 Davidia involucrata HOM05D002969 ORTHO05D003308 1.2e-74 283.9 252 60.3
MBI06_g12843_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 3.8e-73 278.9 257 58.4
Rhsim08G0238100 Rhododendron simsii HOM05D002969 ORTHO05D003308 5.5e-72 275.0 251 59.0
CSS0043728 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 1.2e-71 273.9 251 57.8
Aqoxy7G01394 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 2.7e-71 272.7 252 59.1
CSS0047313 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 4.7e-71 271.9 251 57.4
MBI06_g44919_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 7.9e-71 271.2 253 57.3
Oeu007563.1 Olea europaea HOM05D002969 ORTHO05D003308 3.9e-70 268.9 252 56.3
GSVIVG01016771001 Vitis vinifera HOM05D002969 ORTHO05D003308 7.4e-69 264.6 252 55.6
CiPaw.01G219300 Carya illinoinensis HOM05D002969 ORTHO05D003308 2.8e-68 262.7 252 56.0
Actinidia32183 Actinidia chinensis HOM05D002969 ORTHO05D003308 1.4e-67 260.4 254 55.5
Lj7C292T8 Lonicera japonica HOM05D002969 ORTHO05D003308 1.4e-67 260.4 252 54.8
Haze_16025 Corylus avellana HOM05D002969 ORTHO05D003308 2.4e-67 259.6 252 55.2
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 7.0e-67 258.1 252 55.6
Duzib235G1299 Durio zibethinus HOM05D002969 ORTHO05D003308 7.0e-67 258.1 252 54.8
Migut.I01069 Erythranthe guttata HOM05D002969 ORTHO05D003308 2.2e-65 253.1 252 52.0
COL.COLO4_30764 Corchorus olitorius HOM05D002969 ORTHO05D003308 2.9e-65 252.7 252 53.6
Thecc.06G119100 Theobroma cacao HOM05D002969 ORTHO05D003308 4.2e-64 248.8 252 52.8
MSTRG.10956 Avicennia marina HOM05D002969 ORTHO05D003308 4.7e-63 245.4 252 51.6
ATR0618G078 Amborella trichopoda HOM05D002969 ORTHO05D003308 8.0e-63 244.6 252 54.4
Prupe.3G042500 Prunus persica HOM05D002969 ORTHO05D003308 5.2e-62 241.9 252 52.0
QL05p007828 Quercus lobata HOM05D002969 ORTHO05D003308 8.8e-62 241.1 252 51.6
Gorai.012G011500 Gossypium raimondii HOM05D002969 ORTHO05D003308 2.0e-61 240.0 252 50.8
Gohir.D04G009700 Gossypium hirsutum HOM05D002969 ORTHO05D003308 3.3e-61 239.2 252 50.8
TWI31G0668 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 4.4e-61 238.8 251 52.2
Gohir.A05G405950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 7.4e-61 238.0 252 50.4
Ciclev10024687m.g Citrus clementina HOM05D002969 ORTHO05D003308 1.3e-60 237.3 252 53.2
Eucgr.J02821 Eucalyptus grandis HOM05D002969 ORTHO05D003308 3.7e-60 235.7 251 51.0
MD09G1184300 Malus domestica HOM05D002969 ORTHO05D003308 1.8e-59 233.4 252 49.6
FAN05G1938 Fragaria x ananassa HOM05D002969 ORTHO05D003308 5.3e-59 231.9 253 51.4
DCAR_022697 Daucus carota HOM05D002969 ORTHO05D003308 9.1e-59 231.1 253 49.8
DCAR_016128 Daucus carota HOM05D002969 ORTHO05D003308 1.6e-58 230.3 258 48.4
Cpa.g.sc34.72 Carica papaya HOM05D002969 ORTHO05D003308 2.0e-58 229.9 252 50.8
FvH4_6g34630 Fragaria vesca HOM05D002969 ORTHO05D003308 3.5e-58 229.2 253 51.4
FAN09G2022 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.5e-58 229.2 253 51.4
FAN14G5519 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.5e-58 229.2 253 51.4
Atru.chr1.3951 Acer truncatum HOM05D002969 ORTHO05D003308 2.2e-57 226.5 254 49.6
Sc18g0005650 Simmondsia chinensis HOM05D002969 ORTHO05D003308 2.2e-57 226.5 251 48.6
A07p07070 Brassica napus HOM05D002969 ORTHO05D003308 2.9e-57 226.1 252 51.6
C07p10660 Brassica napus HOM05D002969 ORTHO05D003308 2.9e-57 226.1 252 51.6
BraA07t28494Z Brassica rapa HOM05D002969 ORTHO05D003308 2.9e-57 226.1 252 51.6
RcHm_v2.0_Chr2g0145161 Rosa chinensis HOM05D002969 ORTHO05D003308 3.8e-57 225.7 253 50.6
BcaB06g26734 Brassica carinata HOM05D002969 ORTHO05D003308 6.5e-57 224.9 252 50.8
Lj5C38T4 Lonicera japonica HOM05D002969 ORTHO05D003308 6.5e-57 224.9 237 50.6
MELO3C006797.2 Cucumis melo HOM05D002969 ORTHO05D003308 8.5e-57 224.6 252 48.8
BcaC06g35804 Brassica carinata HOM05D002969 ORTHO05D003308 1.5e-56 223.8 252 51.2
BolC7t41532H Brassica oleracea HOM05D002969 ORTHO05D003308 1.5e-56 223.8 252 51.2
PGR102G0955 Punica granatum HOM05D002969 ORTHO05D003308 2.5e-56 223.0 254 50.4
SGA_v2.0_scaffold71G23857 Striga asiatica HOM05D002969 ORTHO05D003308 7.2e-56 221.5 258 48.4
Carub.0001s1721 Capsella rubella HOM05D002969 ORTHO05D003308 1.6e-55 220.3 252 49.2
AT1G17450 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 2.1e-55 219.9 252 49.2
Sp3g22890 Schrenkiella parvula HOM05D002969 ORTHO05D003308 2.7e-55 219.5 252 50.0
ClCG05G007230 Citrullus lanatus HOM05D002969 ORTHO05D003308 4.7e-55 218.8 252 47.6
CsaV3_3G015990 Cucumis sativus L. HOM05D002969 ORTHO05D003308 8.0e-55 218.0 252 47.2
Aa31LG7G2260 Aethionema arabicum HOM05D002969 ORTHO05D003308 1.8e-54 216.9 252 49.6
Manes.11G021000 Manihot esculenta HOM05D002969 ORTHO05D003308 1.8e-54 216.9 252 47.2
AL1G29730 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 2.3e-54 216.5 252 48.4
ECA247G3059 Erigeron canadensis HOM05D002969 ORTHO05D003308 3.0e-54 216.1 255 46.7
Sed0027017 Sechium edule HOM05D002969 ORTHO05D003308 3.0e-54 216.1 252 46.4
CARHR018040 Cardamine hirsuta HOM05D002969 ORTHO05D003308 6.7e-54 214.9 252 48.0
Cc02_g14940 Coffea canephora HOM05D002969 ORTHO05D003308 1.2e-53 214.2 254 46.5
THA.LOC104813957 Tarenaya hassleriana HOM05D002969 ORTHO05D003308 2.0e-53 213.4 252 48.4
arahy.Tifrunner.gnm1.ann1.MA4BJF Arachis hypogaea HOM05D002969 ORTHO05D003308 3.3e-53 212.6 252 47.2
EL10Ac9g22289 Beta vulgaris HOM05D002969 ORTHO05D003308 3.3e-53 212.6 251 48.2
SalBow6G7155 Salvia bowleyana HOM05D002969 ORTHO05D003308 4.4e-53 212.2 252 46.4
Lalb_Chr10g0094641 Lupinus albus HOM05D002969 ORTHO05D003308 1.3e-52 210.7 252 47.2
arahy.Tifrunner.gnm1.ann1.8DY1VB Arachis hypogaea HOM05D002969 ORTHO05D003308 3.7e-52 209.1 252 46.8
Nitab4.5_0000794g0160 Nicotiana tabacum HOM05D002969 ORTHO05D003308 4.8e-52 208.8 254 48.0
Lsat_1_v5_gn_5_75740 Lactuca sativa HOM05D002969 ORTHO05D003308 8.2e-52 208.0 257 46.7
AUR62010285 Chenopodium quinoa HOM05D002969 ORTHO05D003308 1.8e-51 206.8 251 48.2
AUR62039104 Chenopodium quinoa HOM05D002969 ORTHO05D003308 2.4e-51 206.5 254 47.6
Peaxi162Scf00006g00210 Petunia axillaris HOM05D002969 ORTHO05D003308 4.1e-51 205.7 255 46.3
Peaxi162Scf00068g02519 Petunia axillaris HOM05D002969 ORTHO05D003308 1.2e-50 204.1 254 47.2
Potri.003G064000 Populus trichocarpa HOM05D002969 ORTHO05D003308 2.7e-50 203.0 255 45.5
SHI10580 Sapria himalayana HOM05D002969 ORTHO05D000023 3.5e-50 202.6 256 46.1
TPR.G25535 Trifolium pratense HOM05D002969 ORTHO05D003308 5.9e-50 201.8 245 43.3
HanXRQChr10g0301861 Helianthus annuus HOM05D002969 ORTHO05D003308 7.7e-50 201.4 258 46.5
Thhalv10017997m.g Eutrema salsugineum HOM05D002969 ORTHO05D003308 2.9e-49 199.5 253 46.6
Solyc09g009800.3 Solanum lycopersicum HOM05D002969 ORTHO05D003308 2.9e-49 199.5 251 47.0
Duzib192G0334 Durio zibethinus HOM05D002969 ORTHO05D003308 3.8e-49 199.1 251 45.4
Sabra03G0037600 Salix brachista HOM05D002969 ORTHO05D003308 3.8e-49 199.1 255 45.1
Sopen09g004560 Solanum pennellii HOM05D002969 ORTHO05D003308 3.8e-49 199.1 251 47.4
Ca_13957_v3 Cicer arietinum L. HOM05D002969 ORTHO05D003308 5.0e-49 198.7 251 44.6
Lj3g0017600 Lotus japonicus HOM05D002969 ORTHO05D003308 5.0e-49 198.7 252 43.7
ECA240G4395 Erigeron canadensis HOM05D002969 ORTHO05D003308 6.5e-49 198.4 255 44.7
Medtr3g005240 Medicago truncatula HOM05D002969 ORTHO05D003308 8.5e-49 198.0 251 43.0
Carub.0002s0593 Capsella rubella HOM05D002969 ORTHO05D003308 1.5e-48 197.2 252 46.8
Ah.01g018180 Amaranthus hybridus HOM05D002969 ORTHO05D003308 1.9e-48 196.8 254 44.5
Psat1g003120 Pisum sativum HOM05D002969 ORTHO05D003308 2.5e-48 196.4 251 43.0
Lsat_1_v5_gn_1_38040 Lactuca sativa HOM05D002969 ORTHO05D003308 4.2e-48 195.7 259 44.0
TPR.G14707 Trifolium pratense HOM05D002969 ORTHO05D003308 4.2e-48 195.7 251 43.8
CANSAT54G2721 Cannabis sativa HOM05D002969 ORTHO05D003308 1.2e-47 194.1 254 42.9
Pp3c4_16500 Physcomitrium patens HOM05D002969 ORTHO05D003308 4.0e-46 189.1 260 43.1
Glyma.19G263900 Glycine max HOM05D002969 ORTHO05D003308 2.0e-45 186.8 252 42.5
AL2G17610 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 7.5e-45 184.9 253 44.3
Glyma.02G000100 Glycine max HOM05D002969 ORTHO05D003308 9.8e-45 184.5 252 42.1
Glyma.16G219900 Glycine max HOM05D002969 ORTHO05D003308 2.2e-44 183.3 252 42.1
Ah.01g009920 Amaranthus hybridus HOM05D002969 ORTHO05D003308 2.8e-44 183.0 251 43.8
Thecc.06G115400 Theobroma cacao HOM05D002969 ORTHO05D003308 1.1e-43 181.0 251 42.2
Glyma.12G000400 Glycine max HOM05D002969 ORTHO05D003308 3.1e-43 179.5 252 41.3
Os02g0633100 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 3.1e-43 179.5 252 42.1
Mapoly0002s0195 Marchantia polymorpha HOM05D002969 ORTHO05D003308 4.1e-43 179.1 258 38.8
COL.COLO4_30698 Corchorus olitorius HOM05D002969 ORTHO05D003308 7.0e-43 178.3 210 44.8
TWI31G0627 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 1.6e-42 177.2 252 40.9
Phvul.007G234600 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 7.7e-42 174.9 252 41.3
Peaxi162Scf00559g00315 Petunia axillaris HOM05D002969 ORTHO05D003308 1.7e-41 173.7 250 41.6
Zm00001eb254750 Zea mays HOM05D002969 ORTHO05D003308 1.1e-40 171.0 252 40.1
Zm00001eb254660 Zea mays HOM05D002969 ORTHO05D003308 1.5e-40 170.6 252 40.1
Zm00001eb254680 Zea mays HOM05D002969 ORTHO05D003308 1.5e-40 170.6 252 40.1
SMO119G0293 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 4.2e-40 169.1 263 40.3
Nitab4.5_0010825g0010 Nicotiana tabacum HOM05D002969 ORTHO05D003308 7.2e-40 168.3 252 39.7
HPP92_011313 Vanilla planifolia HOM05D002969 ORTHO05D003308 9.5e-40 167.9 254 40.9
Lalb_Chr10g0094391 Lupinus albus HOM05D002969 ORTHO05D003308 4.7e-39 165.6 199 45.2
vmacro15028 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 8.0e-39 164.9 178 52.2
Gohir.A06G192400 Gossypium hirsutum HOM05D002969 ORTHO05D003308 4.4e-37 159.1 244 40.2
Gorai.010G233800 Gossypium raimondii HOM05D002969 ORTHO05D003308 2.8e-36 156.4 244 39.8
Gohir.D06G200300 Gossypium hirsutum HOM05D002969 ORTHO05D003308 5.9e-34 148.7 244 38.5
Zm00001eb247960 Zea mays HOM05D002969 ORTHO05D003308 7.8e-34 148.3 226 38.9
AagrBONN_evm.TU.Sc2ySwM_344.4533 Anthoceros agrestis HOM05D002969 ORTHO05D003308 3.8e-33 146.0 265 34.0
SMO196G0130 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 3.8e-33 146.0 254 37.8
vmacro15025 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 6.6e-33 145.2 123 62.6
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.6e-31 140.6 248 37.5
Haze_15990 Corylus avellana HOM05D002969 ORTHO05D003308 1.3e-20 104.4 112 48.2
Cfa003558 Carpinus fangiana HOM05D002969 ORTHO05D003308 1.7e-20 104.0 112 47.3
SEGI_24169 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 1.7e-20 104.0 89 55.1
COL.COLO4_27975 Corchorus olitorius HOM05D002969 ORTHO05D003308 2.9e-20 103.2 101 56.4
AT1G59470 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.9e-19 100.5 143 39.2
Zm00001eb254790 Zea mays HOM05D002969 ORTHO05D003308 1.4e-14 84.3 120 43.3
SEGI_18157 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 2.3e-14 83.6 61 68.9
Aqoxy4G01956 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 5.8e-13 79.0 107 45.8
CARHR117350 Cardamine hirsuta HOM05D002969 ORTHO05D003308 5.4e-11 72.4 81 46.9
AT1G59460 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.3e-09 67.8 110 41.8
Os02g0316900 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 2.3e-09 67.0 67 49.3
Phvul.011G011400 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 3.3e-08 63.2 123 35.0


User provided reference genes

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