Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 2.2e-249 865.1 432 100.0
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 5.5e-208 727.6 420 88.1
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 3.0e-198 695.3 418 85.4
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 4.0e-142 508.8 395 64.3
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 1.3e-140 503.8 386 64.2
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 4.6e-138 495.4 386 62.7
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.1e-136 490.7 389 63.8
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 4.3e-136 488.8 386 62.7
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 8.1e-135 484.6 397 61.2
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 1.1e-134 484.2 386 63.0
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 3.1e-134 482.6 389 63.2
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-133 480.7 386 61.4
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 2.6e-133 479.6 395 62.0
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 3.4e-133 479.2 385 62.1
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.4e-133 478.8 386 61.1
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 7.6e-133 478.0 386 61.1
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.6e-133 478.0 386 61.1
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 2.2e-132 476.5 396 59.3
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.9e-132 476.1 388 60.3
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 2.9e-132 476.1 390 60.3
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 8.4e-132 474.6 385 60.0
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 3.2e-131 472.6 385 60.8
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 3.2e-131 472.6 390 60.0
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 9.2e-131 471.1 400 58.5
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 9.2e-131 471.1 390 61.3
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 7.8e-130 468.0 414 57.2
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.7e-129 466.8 391 58.3
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 3.0e-129 466.1 403 59.1
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 6.6e-129 464.9 386 60.1
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 6.6e-129 464.9 385 59.7
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 8.7e-129 464.5 452 53.3
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 1.5e-128 463.8 419 57.3
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 9.6e-128 461.1 393 59.8
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 1.3e-127 460.7 391 59.8
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.6e-127 460.3 385 58.7
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 2.8e-127 459.5 385 60.3
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 4.8e-127 458.8 390 57.9
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 4.8e-127 458.8 384 61.2
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 1.8e-126 456.8 389 61.4
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 2.4e-126 456.4 385 59.7
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 6.9e-126 454.9 395 58.2
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 6.9e-126 454.9 390 60.0
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 6.9e-126 454.9 401 57.9
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 9.0e-126 454.5 398 57.8
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 2.0e-125 453.4 363 62.0
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 3.4e-125 452.6 385 58.4
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 4.4e-125 452.2 395 57.7
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 5.8e-125 451.8 391 57.3
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 9.9e-125 451.1 394 57.4
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 1.7e-124 450.3 394 56.3
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 2.2e-124 449.9 394 56.9
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 2.2e-124 449.9 394 57.1
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.4e-123 446.4 358 60.9
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 2.4e-123 446.4 391 57.3
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 5.4e-123 445.3 390 56.2
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 1.6e-122 443.7 401 54.6
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 2.7e-122 443.0 385 57.9
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 4.6e-122 442.2 385 57.7
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 6.0e-122 441.8 361 61.5
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 6.0e-122 441.8 377 57.0
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.7e-121 440.3 390 56.4
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 6.6e-121 438.3 385 56.9
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.3e-119 434.1 377 56.8
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 2.8e-119 433.0 388 56.4
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 8.1e-119 431.4 395 55.9
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.1e-118 431.0 377 56.8
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 1.1e-118 431.0 385 56.4
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 4.5e-117 425.6 370 58.4
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 1.3e-116 424.1 401 51.1
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 6.4e-116 421.8 370 58.6
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 1.4e-115 420.6 384 54.4
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 1.9e-115 420.2 391 54.0
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 4.2e-115 419.1 350 61.7
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 1.2e-114 417.5 358 58.1
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 2.7e-114 416.4 380 53.7
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 3.5e-114 416.0 401 52.6
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 3.9e-113 412.5 370 57.8
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 1.3e-111 407.5 365 54.8
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 2.1e-111 406.8 395 55.9
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 8.1e-111 404.8 395 53.2
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 5.3e-110 402.1 334 59.9
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 3.4e-109 399.4 367 57.2
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.1e-107 394.4 324 61.1
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 7.1e-107 391.7 393 52.7
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 3.5e-106 389.4 390 52.8
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 4.6e-106 389.0 324 59.9
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.3e-105 387.5 393 50.1
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 4.3e-104 382.5 397 50.4
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.3e-103 380.9 428 47.0
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 1.6e-103 380.6 329 57.8
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.4e-102 377.5 441 46.5
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 2.4e-102 376.7 390 50.8
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 3.1e-102 376.3 390 50.5
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 6.9e-102 375.2 390 50.3
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 5.8e-101 372.1 391 49.6
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 1.0e-100 371.3 347 55.9
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 2.9e-100 369.8 391 49.6
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 1.9e-99 367.1 340 54.7
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 1.6e-98 364.0 324 56.8
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 2.7e-98 363.2 390 50.5
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 3.5e-98 362.8 390 50.5
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 1.8e-97 360.5 391 50.4
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 1.5e-96 357.5 394 49.7
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-93 347.8 303 58.4
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 2.2e-92 343.6 334 53.0
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 1.8e-86 323.9 433 41.6
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 2.0e-80 303.9 373 44.0
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 4.8e-79 299.3 418 40.7
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 4.8e-79 299.3 314 50.0
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.8e-70 270.8 242 55.0
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 6.3e-63 245.7 251 53.4
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 5.9e-61 239.2 201 56.2
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 1.5e-59 234.6 201 57.2
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 1.2e-56 224.9 393 36.1
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.8e-56 221.9 188 58.0
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 2.8e-50 203.8 161 64.0
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 8.0e-50 202.2 270 43.0
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 4.0e-49 199.9 186 53.2
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 4.3e-43 179.9 233 42.5
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 2.1e-42 177.6 415 30.8
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 2.3e-41 174.1 322 34.5
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 5.8e-40 169.5 152 61.2
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 2.2e-39 167.5 156 53.2
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 5.6e-35 152.9 139 53.2
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 1.4e-33 148.3 139 54.7
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.7e-31 140.2 127 57.5
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.5e-27 128.3 322 29.8
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.5e-27 128.3 94 62.8
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 5.4e-22 109.8 328 27.1
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.5e-21 107.1 137 43.1
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 1.1e-19 102.1 78 64.1
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 2.4e-17 94.4 139 40.3
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 7.6e-16 89.4 120 40.8
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 2.5e-11 74.3 56 69.6
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 5.3e-09 66.6 92 42.4
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 7.6e-08 62.8 153 31.4
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 1.4e-06 58.5 80 38.8
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 4.2e-06 57.0 102 37.3


User provided reference genes

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