Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 0.0e+00 1539.6 800 100.0
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 0.0e+00 1360.9 725 96.6
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.4e-227 792.3 750 60.9
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.3e-223 780.4 775 58.8
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.6e-216 756.9 747 58.0
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 4.3e-214 748.8 797 55.0
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 1.8e-212 743.4 741 55.7
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 2.3e-212 743.0 739 56.7
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 8.9e-212 741.1 754 58.8
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.7e-207 726.9 745 54.9
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 2.5e-206 723.0 743 55.3
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 3.3e-206 722.6 753 55.6
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 7.3e-206 721.5 751 54.2
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 3.1e-204 716.1 756 53.7
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 6.8e-204 714.9 743 54.4
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.3e-202 710.7 742 54.6
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 1.3e-202 710.7 802 51.9
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 1.7e-202 710.3 727 56.3
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.4e-201 707.2 739 55.5
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 3.2e-201 706.1 741 54.8
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.3e-199 700.7 775 54.1
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.1e-199 698.7 742 53.5
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 8.6e-199 698.0 730 55.6
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 8.6e-199 698.0 744 53.8
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.1e-198 697.6 775 53.9
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 9.5e-198 694.5 731 54.3
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.1e-197 693.3 710 54.6
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.7e-197 692.2 711 55.3
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 1.4e-196 690.6 741 53.7
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.2e-196 688.7 742 53.0
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 7.5e-195 684.9 759 52.6
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 2.2e-194 683.3 752 54.3
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.1e-193 681.0 759 52.2
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 1.2e-192 677.6 813 50.4
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 1.2e-192 677.6 736 52.2
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 7.8e-192 674.9 855 49.6
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 3.9e-191 672.5 746 52.9
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.5e-190 670.6 731 51.8
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 1.9e-190 670.2 825 48.6
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 2.5e-190 669.8 776 52.6
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 3.3e-190 669.5 819 49.3
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 5.6e-190 668.7 825 48.5
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 4.7e-189 665.6 775 49.9
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.4e-188 664.1 850 48.9
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 2.4e-188 663.3 744 52.8
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 5.2e-188 662.1 716 53.2
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 8.9e-188 661.4 737 52.4
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 8.9e-188 661.4 753 51.9
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 7.6e-187 658.3 745 52.8
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 7.6e-187 658.3 825 48.2
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 4.9e-186 655.6 850 48.5
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 2.4e-185 653.3 842 47.1
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 2.4e-185 653.3 738 51.6
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 3.2e-185 652.9 807 49.2
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 9.2e-185 651.4 738 51.1
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 2.1e-184 650.2 809 49.6
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 3.0e-183 646.4 645 54.9
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 6.6e-183 645.2 749 50.7
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 1.5e-182 644.0 789 49.6
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 9.6e-182 641.3 831 49.3
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 8.1e-181 638.3 756 48.4
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 2.4e-180 636.7 732 51.4
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 4.0e-180 636.0 780 49.9
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 2.0e-179 633.6 736 51.1
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 1.3e-178 630.9 822 47.6
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 1.3e-178 630.9 771 49.7
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.7e-178 630.6 819 47.5
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.2e-178 630.2 741 50.6
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 8.4e-178 628.2 817 47.0
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 2.4e-177 626.7 737 50.7
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 2.4e-177 626.7 734 51.1
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.2e-176 624.4 761 49.1
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 1.2e-176 624.4 731 51.6
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 6.0e-176 622.1 730 51.0
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 6.0e-176 622.1 738 50.1
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 7.8e-176 621.7 751 48.9
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.7e-175 620.5 731 50.8
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 2.3e-175 620.2 730 50.8
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 5.1e-175 619.0 798 47.6
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 3.3e-174 616.3 762 48.0
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 4.3e-174 615.9 731 50.9
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 3.6e-173 612.8 732 51.0
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.4e-172 610.9 731 50.5
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.8e-172 610.5 735 50.3
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 3.1e-172 609.8 738 50.0
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 6.9e-172 608.6 735 49.7
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 3.4e-171 606.3 660 53.0
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 4.5e-171 605.9 736 50.3
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 2.9e-170 603.2 691 51.2
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 4.9e-170 602.4 828 45.2
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 2.4e-169 600.1 757 48.9
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 4.6e-168 595.9 733 49.7
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.3e-167 594.3 615 53.5
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.8e-167 594.0 737 47.8
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 3.7e-165 586.3 733 48.6
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 6.2e-165 585.5 734 48.5
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 4.5e-163 579.3 826 44.8
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 5.8e-163 578.9 841 44.4
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 9.9e-163 578.2 777 46.1
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 1.3e-162 577.8 592 53.5
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 2.9e-162 576.6 708 48.6
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 8.4e-162 575.1 652 53.7
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 3.2e-161 573.2 846 43.6
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 4.2e-161 572.8 736 46.3
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 2.7e-160 570.1 659 50.2
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 6.0e-160 568.9 810 45.4
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 4.3e-158 562.8 695 48.9
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 4.3e-158 562.8 714 48.6
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 1.6e-157 560.8 753 46.2
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.8e-151 540.8 781 44.7
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.5e-150 537.7 746 45.7
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 5.7e-150 535.8 644 48.1
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 1.5e-147 527.7 713 47.3
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 5.9e-147 525.8 445 60.4
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 9.1e-140 501.9 711 45.1
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 2.0e-131 474.2 713 44.7
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 6.3e-125 452.6 766 40.2
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 7.0e-124 449.1 443 54.2
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.3e-122 444.9 666 41.3
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 9.1e-116 422.2 493 49.1
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.5e-113 414.8 461 49.5
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 3.0e-111 407.1 762 38.1
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.9e-105 387.9 766 38.8
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 2.1e-96 357.8 473 44.0
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.4e-92 343.2 487 41.5
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.9e-90 337.0 477 41.9
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.3e-85 319.3 628 35.8
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.9e-84 318.2 501 42.7
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.6e-82 309.7 435 41.1
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.5e-81 307.8 482 39.0
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.5e-81 307.8 482 39.0
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.1e-79 302.4 515 44.1
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.1e-79 300.8 475 38.7
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.4e-78 297.4 466 39.9
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.1e-68 265.8 306 47.7
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 4.8e-56 223.8 191 54.5
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 1.1e-52 212.6 385 39.0
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 3.5e-51 207.6 608 33.9
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.2e-36 157.9 199 49.7
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.2e-28 131.0 399 33.8
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 6.1e-27 127.1 91 61.5
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 1.4e-15 89.4 71 60.6
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.5e-14 84.7 52 69.2
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.0e-13 83.2 384 29.2
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.8e-10 72.4 83 47.0
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 3.7e-08 64.7 50 56.0
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 4.8e-08 64.3 75 45.3


User provided reference genes

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