Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G1004 Papaver somniferum HOM05D007752 ORTHO05D009994 5.9e-188 661.4 532 100.0
PSO170G5102 Papaver somniferum HOM05D007752 ORTHO05D009994 4.7e-185 651.7 532 99.2
CSS0006720 Camellia sinensis var. sinensis HOM05D007752 ORTHO05D009994 1.1e-43 182.2 541 56.6
TAR633G0335 Trochodendron aralioides HOM05D007752 ORTHO05D009994 1.8e-43 181.4 144 57.6
CSS0000350 Camellia sinensis var. sinensis HOM05D007752 ORTHO05D009994 2.9e-41 174.1 506 60.5
Sc20g0006950 Simmondsia chinensis HOM05D007752 ORTHO05D009994 7.3e-37 159.5 172 47.1
Eucgr.A00738 Eucalyptus grandis HOM05D007752 ORTHO05D009994 1.8e-35 154.8 169 45.0
Lj3P941T40 Lonicera japonica HOM05D007752 ORTHO05D009994 2.9e-33 147.5 163 44.2
Haze_21175 Corylus avellana HOM05D007752 ORTHO05D009994 1.9e-32 144.8 138 49.3
QL07p032115 Quercus lobata HOM05D007752 ORTHO05D009994 4.2e-32 143.7 147 49.0
Lj1g0026088 Lotus japonicus HOM05D007752 ORTHO05D009994 1.3e-30 138.7 171 41.5
Cfa017034 Carpinus fangiana HOM05D007752 ORTHO05D009994 2.8e-28 131.0 137 44.5
ClCG10G022730 Citrullus lanatus HOM05D007752 ORTHO05D009994 2.8e-28 131.0 172 39.0
Sed0005875 Sechium edule HOM05D007752 ORTHO05D009994 8.1e-28 129.4 162 40.1
CiPaw.10G164800 Carya illinoinensis HOM05D007752 ORTHO05D009994 1.1e-27 129.0 166 41.0
Actinidia29032 Actinidia chinensis HOM05D007752 ORTHO05D009994 1.8e-27 128.3 137 48.2
MBI03_g22789_MAGBIO Magnolia biondii HOM05D007752 ORTHO05D009994 2.4e-27 127.9 142 43.7
Nn2g10299 Nelumbo nucifera HOM05D007752 ORTHO05D009994 5.3e-27 126.7 174 39.7
Zm00001eb016080 Zea mays HOM05D007752 ORTHO05D009994 2.0e-26 124.8 168 40.5
PGR031G1793 Punica granatum HOM05D007752 ORTHO05D009994 9.9e-26 122.5 158 39.9
Rhsim04G0121800 Rhododendron simsii HOM05D007752 ORTHO05D009994 9.9e-26 122.5 153 41.8
TWI77G0759 Tripterygium wilfordii HOM05D007752 ORTHO05D009994 1.7e-25 121.7 157 42.0
Ciclev10013314m.g Citrus clementina HOM05D007752 ORTHO05D009994 2.2e-25 121.3 141 41.8
SalBow8G2716 Salvia bowleyana HOM05D007752 ORTHO05D009994 5.5e-24 116.7 167 39.5
TPR.G14113 Trifolium pratense HOM05D007752 ORTHO05D009994 3.0e-22 110.9 410 59.8
Medtr7g073260 Medicago truncatula HOM05D007752 ORTHO05D009994 6.7e-22 109.8 149 37.6
SGA_v2.0_scaffold85G26614 Striga asiatica HOM05D007752 ORTHO05D009994 7.4e-21 106.3 131 41.2
Ca_07763_v3 Cicer arietinum L. HOM05D007752 ORTHO05D009994 4.8e-20 103.6 162 35.8
Sabra04G0153400 Salix brachista HOM05D007752 ORTHO05D009994 4.8e-20 103.6 155 35.5
Potri.016G136700 Populus trichocarpa HOM05D007752 ORTHO05D009994 4.0e-19 100.5 162 34.0
Aqoxy4G02425 Aquilegia oxysepala HOM05D007752 ORTHO05D009994 5.3e-19 100.1 142 37.3
MELO3C009103.2 Cucumis melo HOM05D007752 ORTHO05D009994 6.9e-19 99.8 154 33.1
Migut.J00038 Erythranthe guttata HOM05D007752 ORTHO05D009994 9.0e-19 99.4 135 39.3
COL.COLO4_06481 Corchorus olitorius HOM05D007752 ORTHO05D000248 2.0e-18 98.2 172 29.1
Oeu057981.1 Olea europaea HOM05D007752 ORTHO05D009994 2.0e-18 98.2 128 39.8
Lsat_1_v5_gn_5_152320 Lactuca sativa HOM05D007752 ORTHO05D009994 2.6e-18 97.8 141 39.7
Prupe.6G293600 Prunus persica HOM05D007752 ORTHO05D009994 5.8e-18 96.7 140 38.6
HanXRQChr01g0000111 Helianthus annuus HOM05D007752 ORTHO05D009994 7.6e-18 96.3 139 38.8
Glyma.09G274800 Glycine max HOM05D007752 ORTHO05D009994 1.0e-17 95.9 103 46.6
Gorai.005G004200 Gossypium raimondii HOM05D007752 ORTHO05D009994 1.3e-17 95.5 157 34.4
Cpa.g.sc86.57 Carica papaya HOM05D007752 ORTHO05D009994 3.8e-17 94.0 173 31.2
CANSAT35G0798 Cannabis sativa HOM05D007752 ORTHO05D009994 6.5e-17 93.2 152 32.9
Hma1.2p1_0174F.1_g076820 Hydrangea macrophylla HOM05D007752 ORTHO05D009994 6.5e-17 93.2 137 37.2
Ah.08g209310 Amaranthus hybridus HOM05D007752 ORTHO05D009994 1.9e-16 91.7 138 32.6
SalBow1G2062 Salvia bowleyana HOM05D007752 ORTHO05D009994 1.9e-16 91.7 141 36.2
SalBow1G4712 Salvia bowleyana HOM05D007752 ORTHO05D009994 1.9e-16 91.7 141 36.2
MD04G1174700 Malus domestica HOM05D007752 ORTHO05D009994 7.1e-16 89.7 158 30.4
Thecc.04G151600 Theobroma cacao HOM05D007752 ORTHO05D009994 9.3e-16 89.4 162 33.3
AUR62029765 Chenopodium quinoa HOM05D007752 ORTHO05D009994 1.2e-15 89.0 156 30.8
EL10Ac7g17101 Beta vulgaris HOM05D007752 ORTHO05D000248 1.0e-14 85.9 140 32.1
VMungo1383G3403 Vigna mungo HOM05D007752 ORTHO05D009994 1.0e-14 85.9 172 30.8
ATR1127G173 Amborella trichopoda HOM05D007752 ORTHO05D009994 3.0e-14 84.3 91 44.0
Dinv16979 Davidia involucrata HOM05D007752 ORTHO05D009994 3.0e-14 84.3 191 35.6
THA.LOC104807022 Tarenaya hassleriana HOM05D007752 ORTHO05D009994 8.7e-14 82.8 161 29.2
VMungo0251G1651 Vigna mungo HOM05D007752 ORTHO05D009994 1.1e-13 82.4 168 32.1
ECA248G3142 Erigeron canadensis HOM05D007752 ORTHO05D009994 3.3e-13 80.9 139 30.9
RcHm_v2.0_Chr3g0460471 Rosa chinensis HOM05D007752 ORTHO05D009994 3.3e-13 80.9 159 32.1
CDE04G1037 Ceratophyllum demersum HOM05D007752 ORTHO05D009994 2.1e-12 78.2 87 41.4
Solyc09g042250.2 Solanum lycopersicum HOM05D007752 ORTHO05D009994 4.8e-12 77.0 137 32.1
SalBow5G4979 Salvia bowleyana HOM05D007752 ORTHO05D009994 1.4e-11 75.5 132 32.6
Phvul.008G082800 Phaseolus vulgaris HOM05D007752 ORTHO05D009994 2.6e-10 71.2 172 27.9
FvH4_6g09870 Fragaria vesca HOM05D007752 ORTHO05D009994 1.0e-09 69.3 86 38.4
Gohir.A02G003300 Gossypium hirsutum HOM05D007752 ORTHO05D009994 1.0e-09 69.3 157 28.0
AUR62006417 Chenopodium quinoa HOM05D007752 ORTHO05D000248 1.7e-09 68.6 137 27.0
FAN02G1651 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.7e-09 68.6 179 27.9
FAN14G1029 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.7e-09 68.6 85 38.8
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 5.0e-09 67.0 84 38.1
Psat3g118880 Pisum sativum HOM05D007752 ORTHO05D009994 8.5e-09 66.2 138 31.9
Nitab4.5_0004433g0030 Nicotiana tabacum HOM05D007752 ORTHO05D009994 1.1e-08 65.9 138 29.7
Sopen09g015390 Solanum pennellii HOM05D007752 ORTHO05D009994 2.5e-08 64.7 137 29.2
Gohir.D02G003700 Gossypium hirsutum HOM05D007752 ORTHO05D009994 4.2e-08 63.9 141 28.4
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 9.3e-08 62.8 112 31.2
CDE06G1380 Ceratophyllum demersum HOM05D007752 ORTHO05D009994 2.7e-07 61.2 150 31.3
Os03g0336000 Oryza sativa ssp. japonica HOM05D007752 ORTHO05D009994 4.6e-07 60.5 88 35.2
Thecc.05G003500 Theobroma cacao HOM05D008684 ORTHO05D010796 4.6e-07 60.5 170 25.3
Actinidia06778 Actinidia chinensis HOM05D002479 ORTHO05D002675 6.1e-07 60.1 188 27.7
Lsat_1_v5_gn_4_139241 Lactuca sativa HOM05D004783 ORTHO05D005581 1.0e-06 59.3 166 24.7
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 1.8e-06 58.5 162 25.9
Duzib093G0470 Durio zibethinus HOM05D008684 ORTHO05D010796 1.8e-06 58.5 166 25.9
ECA240G1124 Erigeron canadensis HOM05D005398 ORTHO05D000476 2.3e-06 58.2 110 33.6
Atru.chr3.1557 Acer truncatum HOM05D008684 ORTHO05D010796 3.0e-06 57.8 171 24.6
Thhalv10027654m.g Eutrema salsugineum HOM05D006858 ORTHO05D008767 3.9e-06 57.4 130 29.2
ATR0605G071 Amborella trichopoda HOM05D004783 ORTHO05D005581 5.1e-06 57.0 169 26.0
TPR.G29077 Trifolium pratense HOM05D008684 ORTHO05D010796 5.1e-06 57.0 172 23.3
Gohir.A05G168200 Gossypium hirsutum HOM05D007956 ORTHO05D010152 6.7e-06 56.6 195 21.0


User provided reference genes

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