Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G0918 Papaver somniferum HOM05D061670 ORTHO05D010879 7.9e-279 963.8 750 100.0
PSO675G9246 Papaver somniferum HOM05D061670 ORTHO05D010879 4.4e-205 718.8 752 69.3
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 2.9e-15 88.2 106 43.4
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 4.2e-14 84.3 115 40.0
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 5.5e-14 84.0 129 37.2
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 2.1e-13 82.0 115 40.0
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 4.7e-13 80.9 139 33.8
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 8.0e-13 80.1 111 39.6
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.4e-12 79.3 127 38.6
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 6.8e-12 77.0 100 43.0
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 8.8e-12 76.6 68 47.1
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 2.0e-11 75.5 122 35.2
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 7.5e-11 73.6 65 53.8
Prupe.1G176100 Prunus persica HOM05D010496 ORTHO05D010879 7.5e-11 73.6 46 65.2
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 7.5e-11 73.6 143 32.2
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.3e-10 72.8 139 36.7
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 1.3e-10 72.8 102 40.2
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.7e-10 72.4 137 36.5
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.2e-10 72.0 113 38.1
FAN22G0913 Fragaria x ananassa HOM05D010496 ORTHO05D010879 2.2e-10 72.0 68 48.5
Medtr1g116100 Medicago truncatula HOM05D011141 ORTHO05D010879 2.2e-10 72.0 75 45.3
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.8e-10 71.6 50 56.0
GSVIVG01031653001 Vitis vinifera HOM05D010496 ORTHO05D010879 2.8e-10 71.6 87 39.1
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 3.7e-10 71.2 51 60.8
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 3.7e-10 71.2 51 60.8
FAN07G2091 Fragaria x ananassa HOM05D010496 ORTHO05D010879 3.7e-10 71.2 54 55.6
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.7e-10 71.2 51 60.8
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.7e-10 71.2 51 60.8
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.7e-10 71.2 51 60.8
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 3.7e-10 71.2 131 34.4
RcHm_v2.0_Chr4g0410661 Rosa chinensis HOM05D010496 ORTHO05D010879 3.7e-10 71.2 71 46.5
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 4.8e-10 70.9 51 58.8
FvH4_4g12430 Fragaria vesca HOM05D010496 ORTHO05D010879 6.3e-10 70.5 68 47.1
FAN12G2147 Fragaria x ananassa HOM05D010496 ORTHO05D010879 6.3e-10 70.5 68 47.1
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 8.3e-10 70.1 122 33.6
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 8.3e-10 70.1 51 58.8
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 8.3e-10 70.1 67 50.7
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 8.3e-10 70.1 119 34.5
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.1e-09 69.7 49 61.2
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 1.1e-09 69.7 51 58.8
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 1.1e-09 69.7 51 58.8
MD04G1026500 Malus domestica HOM05D010496 ORTHO05D010879 1.4e-09 69.3 174 29.9
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 1.4e-09 69.3 78 44.9
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 1.8e-09 68.9 130 39.2
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.8e-09 68.9 91 44.0
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 1.8e-09 68.9 50 60.0
AUR62018491 Chenopodium quinoa HOM05D007934 ORTHO05D010879 2.4e-09 68.6 63 50.8
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 2.4e-09 68.6 76 43.4
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 2.4e-09 68.6 68 47.1
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 3.1e-09 68.2 168 31.0
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 3.1e-09 68.2 51 56.9
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 3.1e-09 68.2 66 48.5
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 3.1e-09 68.2 68 48.5
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 3.1e-09 68.2 72 47.2
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 4.1e-09 67.8 51 54.9
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 5.3e-09 67.4 125 35.2
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 5.3e-09 67.4 66 45.5
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 5.3e-09 67.4 124 37.1
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 5.3e-09 67.4 131 34.4
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 5.3e-09 67.4 56 50.0
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 5.3e-09 67.4 95 41.1
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 5.3e-09 67.4 73 45.2
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 7.0e-09 67.0 49 59.2
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 7.0e-09 67.0 63 54.0
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 7.0e-09 67.0 48 60.4
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 7.0e-09 67.0 153 34.0
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 9.1e-09 66.6 51 58.8
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 9.1e-09 66.6 52 55.8
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 9.1e-09 66.6 52 55.8
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 9.1e-09 66.6 55 54.5
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 9.1e-09 66.6 153 34.6
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 9.1e-09 66.6 54 51.9
EL10Ac3g07401 Beta vulgaris HOM05D010496 ORTHO05D010879 1.2e-08 66.2 106 35.8
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.2e-08 66.2 48 58.3
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.2e-08 66.2 52 55.8
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 1.6e-08 65.9 46 58.7
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.6e-08 65.9 64 50.0
AUR62026200 Chenopodium quinoa HOM05D007934 ORTHO05D010067 1.6e-08 65.9 100 37.0
Haze_11711 Corylus avellana HOM05D010496 ORTHO05D010879 1.6e-08 65.9 46 58.7
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.6e-08 65.9 51 56.9
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 1.6e-08 65.9 68 47.1
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 2.0e-08 65.5 51 54.9
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 2.7e-08 65.1 49 55.1
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.7e-08 65.1 113 38.9
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.7e-08 65.1 47 55.3
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 3.5e-08 64.7 58 51.7
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 3.5e-08 64.7 58 48.3
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 4.5e-08 64.3 94 36.2
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 4.5e-08 64.3 142 36.6
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 4.5e-08 64.3 51 51.0
Glyma.10G293200 Glycine max HOM05D011141 ORTHO05D010879 4.5e-08 64.3 47 59.6
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 4.5e-08 64.3 120 37.5
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 4.5e-08 64.3 111 38.7
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 5.9e-08 63.9 121 36.4
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 5.9e-08 63.9 124 33.9
Cfa008703 Carpinus fangiana HOM05D010496 ORTHO05D010879 7.7e-08 63.5 116 33.6
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 7.7e-08 63.5 41 63.4
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 7.7e-08 63.5 51 52.9
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 7.7e-08 63.5 51 52.9
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 7.7e-08 63.5 51 52.9
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 7.7e-08 63.5 86 39.5
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 7.7e-08 63.5 50 56.0
Glyma.20G243300 Glycine max HOM05D011141 ORTHO05D010879 7.7e-08 63.5 46 58.7
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 7.7e-08 63.5 165 27.3
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 7.7e-08 63.5 61 45.9
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 7.7e-08 63.5 51 54.9
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 1.0e-07 63.2 58 48.3
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 1.0e-07 63.2 51 51.0
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 1.0e-07 63.2 50 56.0
Gohir.D09G202900 Gossypium hirsutum HOM05D010496 ORTHO05D010879 1.0e-07 63.2 42 59.5
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 1.0e-07 63.2 52 57.7
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.3e-07 62.8 56 50.0
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.3e-07 62.8 56 50.0
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.3e-07 62.8 51 51.0
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.3e-07 62.8 51 52.9
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.3e-07 62.8 51 52.9
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 1.7e-07 62.4 51 52.9
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 1.7e-07 62.4 104 35.6
VMungo0720G3183 Vigna mungo HOM05D011141 ORTHO05D010879 2.2e-07 62.0 49 55.1
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.9e-07 61.6 172 27.3
Gorai.006G226800 Gossypium raimondii HOM05D010496 ORTHO05D010879 2.9e-07 61.6 42 57.1
Phvul.007G007000 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 2.9e-07 61.6 71 40.8
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 5.0e-07 60.8 49 53.1
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 5.0e-07 60.8 52 53.8
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 5.0e-07 60.8 44 59.1
Gohir.A09G209500 Gossypium hirsutum HOM05D010496 ORTHO05D010879 6.5e-07 60.5 42 54.8
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 8.5e-07 60.1 120 34.2
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 8.5e-07 60.1 60 50.0
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 1.1e-06 59.7 61 44.3
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 1.5e-06 59.3 49 51.0
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 1.5e-06 59.3 100 33.0
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 1.9e-06 58.9 137 29.9
VMungo0720G1878 Vigna mungo HOM05D011141 ORTHO05D010879 1.9e-06 58.9 119 33.6
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.5e-06 58.5 51 51.0
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 2.5e-06 58.5 51 51.0
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 2.5e-06 58.5 42 57.1
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 3.2e-06 58.2 50 54.0
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 3.2e-06 58.2 50 54.0
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 3.2e-06 58.2 50 54.0
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 4.2e-06 57.8 130 32.3
VMungo0720G2993 Vigna mungo HOM05D011141 ORTHO05D010879 4.2e-06 57.8 188 28.7
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 5.5e-06 57.4 51 49.0
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 5.5e-06 57.4 51 47.1
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 7.2e-06 57.0 49 49.0
Glyma.20G243200 Glycine max HOM05D011141 ORTHO05D010879 7.2e-06 57.0 46 54.3
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 9.4e-06 56.6 39 61.5


User provided reference genes

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