Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G0852 Papaver somniferum HOM05D002969 ORTHO05D003308 0.0e+00 1099.7 566 100.0
PSO447G0254 Papaver somniferum HOM05D002969 ORTHO05D003308 8.7e-246 853.6 541 83.2
PSO210G6259 Papaver somniferum HOM05D002969 ORTHO05D003308 1.4e-243 846.3 541 82.4
TAR626G1632 Trochodendron aralioides HOM05D002969 ORTHO05D003308 2.7e-146 523.1 545 55.6
Nn7g36584 Nelumbo nucifera HOM05D002969 ORTHO05D003308 3.0e-145 519.6 551 54.4
Aqoxy7G01394 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 3.2e-139 499.6 541 52.5
Dinv30672 Davidia involucrata HOM05D002969 ORTHO05D003308 3.3e-136 489.6 554 52.7
Dinv34332 Davidia involucrata HOM05D002969 ORTHO05D003308 3.3e-136 489.6 554 52.7
Dinv04036 Davidia involucrata HOM05D002969 ORTHO05D003308 4.8e-135 485.7 555 51.7
Actinidia32183 Actinidia chinensis HOM05D002969 ORTHO05D003308 1.8e-126 457.2 550 48.9
CSS0047313 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 4.0e-126 456.1 539 49.5
Haze_16025 Corylus avellana HOM05D002969 ORTHO05D003308 1.4e-123 447.6 552 48.0
CSS0043728 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 1.9e-123 447.2 537 48.0
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 2.3e-121 440.3 543 48.4
QL05p007828 Quercus lobata HOM05D002969 ORTHO05D003308 3.0e-121 439.9 568 45.6
Rhsim08G0238100 Rhododendron simsii HOM05D002969 ORTHO05D003308 3.9e-113 412.9 553 46.5
GSVIVG01016771001 Vitis vinifera HOM05D002969 ORTHO05D003308 1.9e-112 410.6 458 52.8
Lsat_1_v5_gn_5_75740 Lactuca sativa HOM05D002969 ORTHO05D003308 3.3e-112 409.8 544 46.5
Oeu007563.1 Olea europaea HOM05D002969 ORTHO05D003308 1.6e-106 391.0 547 45.0
Ciclev10024687m.g Citrus clementina HOM05D002969 ORTHO05D003308 2.1e-106 390.6 558 43.5
Lj7C292T8 Lonicera japonica HOM05D002969 ORTHO05D003308 7.4e-104 382.1 551 45.0
Cc02_g14940 Coffea canephora HOM05D002969 ORTHO05D003308 1.6e-103 380.9 545 42.4
PGR102G0955 Punica granatum HOM05D002969 ORTHO05D003308 4.1e-102 376.3 540 43.1
CsaV3_3G015990 Cucumis sativus L. HOM05D002969 ORTHO05D003308 5.9e-101 372.5 541 42.7
Gorai.012G011500 Gossypium raimondii HOM05D002969 ORTHO05D003308 1.3e-100 371.3 547 43.0
MELO3C006797.2 Cucumis melo HOM05D002969 ORTHO05D003308 8.5e-100 368.6 545 42.2
Gohir.A05G405950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 3.2e-99 366.7 549 42.6
ClCG05G007230 Citrullus lanatus HOM05D002969 ORTHO05D003308 1.2e-98 364.8 570 42.8
Atru.chr1.3951 Acer truncatum HOM05D002969 ORTHO05D003308 6.7e-97 359.0 431 47.8
MSTRG.10956 Avicennia marina HOM05D002969 ORTHO05D003308 8.8e-97 358.6 543 40.1
HanXRQChr10g0301861 Helianthus annuus HOM05D002969 ORTHO05D003308 1.1e-96 358.2 546 41.0
Sed0027017 Sechium edule HOM05D002969 ORTHO05D003308 2.0e-96 357.5 563 41.4
TWI31G0668 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 2.0e-96 357.5 547 42.8
RcHm_v2.0_Chr2g0145161 Rosa chinensis HOM05D002969 ORTHO05D003308 1.4e-94 351.3 543 40.5
Eucgr.J02821 Eucalyptus grandis HOM05D002969 ORTHO05D003308 3.1e-94 350.1 547 42.8
Lsat_1_v5_gn_1_38040 Lactuca sativa HOM05D002969 ORTHO05D003308 1.2e-93 348.2 583 40.0
MBI06_g22353_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 2.6e-93 347.1 342 57.0
Cfa003558 Carpinus fangiana HOM05D002969 ORTHO05D003308 4.5e-93 346.3 541 42.0
ECA247G3059 Erigeron canadensis HOM05D002969 ORTHO05D003308 4.5e-93 346.3 547 41.9
DCAR_022697 Daucus carota HOM05D002969 ORTHO05D003308 1.3e-92 344.7 547 40.4
ECA240G4395 Erigeron canadensis HOM05D002969 ORTHO05D003308 8.5e-92 342.0 545 40.0
FAN05G1938 Fragaria x ananassa HOM05D002969 ORTHO05D003308 7.2e-91 339.0 502 40.8
THA.LOC104813957 Tarenaya hassleriana HOM05D002969 ORTHO05D003308 9.4e-91 338.6 553 40.3
CANSAT54G2721 Cannabis sativa HOM05D002969 ORTHO05D003308 1.6e-90 337.8 555 40.5
COL.COLO4_30764 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.6e-90 337.8 598 38.3
Peaxi162Scf00068g02519 Petunia axillaris HOM05D002969 ORTHO05D003308 1.4e-89 334.7 575 39.0
Carub.0001s1721 Capsella rubella HOM05D002969 ORTHO05D003308 6.7e-89 332.4 567 39.0
FvH4_6g34630 Fragaria vesca HOM05D002969 ORTHO05D003308 8.8e-89 332.0 547 39.7
FAN14G5519 Fragaria x ananassa HOM05D002969 ORTHO05D003308 8.8e-89 332.0 547 39.7
Sp3g22890 Schrenkiella parvula HOM05D002969 ORTHO05D003308 1.5e-88 331.3 420 45.7
FAN09G2022 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.0e-88 330.9 549 39.9
AL1G29730 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 3.3e-88 330.1 566 39.0
DCAR_016128 Daucus carota HOM05D002969 ORTHO05D003308 5.7e-88 329.3 551 39.6
Sopen09g004560 Solanum pennellii HOM05D002969 ORTHO05D003308 7.4e-88 328.9 566 38.0
Thecc.06G119100 Theobroma cacao HOM05D002969 ORTHO05D003308 9.7e-88 328.6 457 45.5
Aa31LG7G2260 Aethionema arabicum HOM05D002969 ORTHO05D003308 1.7e-87 327.8 572 37.8
Solyc09g009800.3 Solanum lycopersicum HOM05D002969 ORTHO05D003308 2.8e-87 327.0 566 37.6
CARHR018040 Cardamine hirsuta HOM05D002969 ORTHO05D003308 3.7e-87 326.6 546 39.4
Nitab4.5_0000794g0160 Nicotiana tabacum HOM05D002969 ORTHO05D003308 4.1e-86 323.2 583 36.7
ATR0618G078 Amborella trichopoda HOM05D002969 ORTHO05D003308 1.6e-85 321.2 561 39.6
PSO478G1045 Papaver somniferum HOM05D002969 ORTHO05D003308 4.5e-85 319.7 199 85.9
AT1G17450 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.7e-84 317.8 398 45.5
Carub.0002s0593 Capsella rubella HOM05D002969 ORTHO05D003308 1.7e-84 317.8 552 39.1
MD09G1184300 Malus domestica HOM05D002969 ORTHO05D003308 2.9e-84 317.0 504 38.9
Lj5C38T4 Lonicera japonica HOM05D002969 ORTHO05D003308 6.5e-84 315.8 546 39.2
Migut.I01069 Erythranthe guttata HOM05D002969 ORTHO05D003308 8.5e-84 315.5 591 36.0
BcaC06g35804 Brassica carinata HOM05D002969 ORTHO05D003308 1.9e-83 314.3 568 37.9
C07p10660 Brassica napus HOM05D002969 ORTHO05D003308 1.9e-83 314.3 568 37.9
BolC7t41532H Brassica oleracea HOM05D002969 ORTHO05D003308 1.9e-83 314.3 568 37.9
Potri.003G064000 Populus trichocarpa HOM05D002969 ORTHO05D003308 1.9e-83 314.3 546 40.1
A07p07070 Brassica napus HOM05D002969 ORTHO05D003308 3.2e-83 313.5 565 37.9
BraA07t28494Z Brassica rapa HOM05D002969 ORTHO05D003308 3.2e-83 313.5 565 37.9
Haze_15990 Corylus avellana HOM05D002969 ORTHO05D003308 4.2e-83 313.2 541 39.2
Duzib235G1299 Durio zibethinus HOM05D002969 ORTHO05D003308 9.4e-83 312.0 455 43.3
Ah.01g018180 Amaranthus hybridus HOM05D002969 ORTHO05D003308 1.2e-82 311.6 566 39.0
BcaB06g26734 Brassica carinata HOM05D002969 ORTHO05D003308 2.1e-82 310.8 565 37.5
Sabra03G0037600 Salix brachista HOM05D002969 ORTHO05D003308 4.7e-82 309.7 570 38.4
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 8.0e-82 308.9 459 41.0
SGA_v2.0_scaffold71G23857 Striga asiatica HOM05D002969 ORTHO05D003308 8.0e-82 308.9 606 35.0
SEGI_24599 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 5.2e-81 306.2 480 41.5
TWI31G0627 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 6.7e-81 305.8 555 36.0
AL2G17610 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 1.2e-80 305.1 558 39.4
SMO119G0293 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 1.5e-80 304.7 552 38.0
Thhalv10017997m.g Eutrema salsugineum HOM05D002969 ORTHO05D003308 1.3e-79 301.6 543 36.5
AT1G59470 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 4.1e-78 296.6 498 40.6
AUR62010285 Chenopodium quinoa HOM05D002969 ORTHO05D003308 1.7e-76 291.2 572 37.6
Sc18g0005650 Simmondsia chinensis HOM05D002969 ORTHO05D003308 3.8e-76 290.0 570 36.3
EL10Ac9g22289 Beta vulgaris HOM05D002969 ORTHO05D003308 5.0e-76 289.7 634 36.3
HPP92_011313 Vanilla planifolia HOM05D002969 ORTHO05D003308 9.4e-75 285.4 541 37.9
Zm00001eb254660 Zea mays HOM05D002969 ORTHO05D003308 1.6e-74 284.6 401 41.9
Pp3c4_16500 Physcomitrium patens HOM05D002969 ORTHO05D003308 2.6e-72 277.3 431 41.3
SalBow6G7155 Salvia bowleyana HOM05D002969 ORTHO05D003308 4.4e-72 276.6 567 34.2
vmacro15027 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 5.7e-72 276.2 277 55.2
MD11G1308600 Malus domestica HOM05D002969 ORTHO05D003308 3.7e-71 273.5 481 40.7
Glyma.19G263900 Glycine max HOM05D002969 ORTHO05D003308 2.4e-70 270.8 552 37.3
Glyma.02G000100 Glycine max HOM05D002969 ORTHO05D003308 7.7e-69 265.8 551 36.7
Os02g0633100 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 3.8e-68 263.5 390 39.7
AagrBONN_evm.TU.Sc2ySwM_344.4533 Anthoceros agrestis HOM05D002969 ORTHO05D003308 1.1e-67 261.9 477 37.9
Duzib192G0334 Durio zibethinus HOM05D002969 ORTHO05D003308 1.1e-67 261.9 411 40.4
Thecc.06G115400 Theobroma cacao HOM05D002969 ORTHO05D003308 2.1e-66 257.7 591 35.4
Mapoly0002s0195 Marchantia polymorpha HOM05D002969 ORTHO05D003308 4.7e-66 256.5 515 36.3
Lalb_Chr10g0094641 Lupinus albus HOM05D002969 ORTHO05D003308 1.0e-65 255.4 566 34.1
Peaxi162Scf00006g00210 Petunia axillaris HOM05D002969 ORTHO05D003308 1.5e-64 251.5 453 37.3
SMO196G0130 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 2.0e-64 251.1 539 33.6
Os02g0316900 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 2.8e-63 247.3 418 37.1
Phvul.007G234600 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 1.4e-62 245.0 539 35.8
Ca_13957_v3 Cicer arietinum L. HOM05D002969 ORTHO05D003308 9.2e-62 242.3 548 35.2
arahy.Tifrunner.gnm1.ann1.MA4BJF Arachis hypogaea HOM05D002969 ORTHO05D003308 1.7e-60 238.0 544 33.3
arahy.Tifrunner.gnm1.ann1.8DY1VB Arachis hypogaea HOM05D002969 ORTHO05D003308 2.9e-60 237.3 548 33.0
AUR62039104 Chenopodium quinoa HOM05D002969 ORTHO05D003308 3.3e-59 233.8 563 35.9
Lj3g0017600 Lotus japonicus HOM05D002969 ORTHO05D003308 5.6e-59 233.0 544 33.5
Ah.01g009920 Amaranthus hybridus HOM05D002969 ORTHO05D003308 1.6e-58 231.5 270 52.2
Zm00001eb254750 Zea mays HOM05D002969 ORTHO05D003308 8.0e-58 229.2 338 41.4
Glyma.16G219900 Glycine max HOM05D002969 ORTHO05D003308 5.2e-57 226.5 540 34.1
TPR.G25535 Trifolium pratense HOM05D002969 ORTHO05D003308 5.2e-57 226.5 498 35.1
TPR.G14707 Trifolium pratense HOM05D002969 ORTHO05D003308 2.6e-56 224.2 566 33.7
COL.COLO4_30698 Corchorus olitorius HOM05D002969 ORTHO05D003308 2.0e-53 214.5 328 43.0
Psat1g003120 Pisum sativum HOM05D002969 ORTHO05D003308 1.0e-52 212.2 494 32.8
Medtr3g005240 Medicago truncatula HOM05D002969 ORTHO05D003308 1.3e-52 211.8 492 34.3
vmacro15024 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 8.6e-52 209.1 236 51.7
Phvul.011G011400 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 3.3e-51 207.2 387 37.0
CiPaw.01G219400 Carya illinoinensis HOM05D002969 ORTHO05D003308 2.1e-50 204.5 227 53.3
Zm00001eb254770 Zea mays HOM05D002969 ORTHO05D003308 2.8e-50 204.1 231 46.8
Cpa.g.sc34.76 Carica papaya HOM05D002969 ORTHO05D003308 4.0e-49 200.3 230 50.4
Nitab4.5_0010825g0010 Nicotiana tabacum HOM05D002969 ORTHO05D003308 3.7e-47 193.7 343 36.2
Zm00001eb247980 Zea mays HOM05D002969 ORTHO05D003308 4.1e-46 190.3 210 46.7
Manes.11G021000 Manihot esculenta HOM05D002969 ORTHO05D003308 2.0e-45 188.0 337 39.5
SHI10580 Sapria himalayana HOM05D002969 ORTHO05D000023 9.5e-43 179.1 617 29.7
Prupe.3G042500 Prunus persica HOM05D002969 ORTHO05D003308 2.4e-38 164.5 330 36.4
MBI06_g12843_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 7.1e-38 162.9 314 37.9
Cpa.g.sc34.72 Carica papaya HOM05D002969 ORTHO05D003308 2.7e-37 161.0 304 36.5
Gohir.D04G009700 Gossypium hirsutum HOM05D002969 ORTHO05D003308 1.7e-36 158.3 323 35.0
Os05g0569900 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 1.8e-33 148.3 184 41.8
Gohir.D06G200300 Gossypium hirsutum HOM05D002969 ORTHO05D003308 5.2e-25 120.2 207 40.1
Gorai.010G233800 Gossypium raimondii HOM05D002969 ORTHO05D003308 6.9e-25 119.8 174 42.5
Gohir.A06G192400 Gossypium hirsutum HOM05D002969 ORTHO05D003308 2.6e-24 117.9 207 40.1
GSVIVG01001689001 Vitis vinifera HOM05D002969 ORTHO05D003308 9.9e-24 115.9 139 49.6
FvH4_2g23920 Fragaria vesca HOM05D002969 ORTHO05D003308 1.1e-22 112.5 416 24.3
FAN24G1542 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.1e-22 112.5 416 24.3
FAN15G1247 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.4e-22 112.1 413 24.7
FAN27G1917 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.4e-22 111.3 376 25.3
Cre12.g518107 Chlamydomonas reinhardtii HOM05D002969 ORTHO05D003308 5.1e-20 103.6 351 23.4
Aqoxy4G01956 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 6.2e-18 96.7 74 62.2
MBI06_g44919_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 1.7e-15 88.6 232 34.9
SEGI_00337 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 6.0e-13 80.1 98 51.0
Glyma.12G000400 Glycine max HOM05D002969 ORTHO05D003308 1.6e-10 72.0 218 31.2
SEGI_18101 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 5.8e-08 63.5 76 39.5
RcHm_v2.0_Chr6g0291551 Rosa chinensis HOM05D002969 ORTHO05D003308 1.3e-07 62.4 81 37.0
Peaxi162Scf00559g00315 Petunia axillaris HOM05D002969 ORTHO05D003308 4.2e-06 57.4 231 24.2


User provided reference genes

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