Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 2.5e-181 638.6 322 100.0
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 8.9e-171 603.6 324 96.3
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 2.7e-103 379.4 322 63.4
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 3.1e-99 365.9 318 61.0
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 5.0e-97 358.6 267 66.3
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.6e-95 353.6 263 68.1
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 6.7e-94 348.2 260 70.0
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.6e-93 346.3 284 61.3
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 1.1e-91 340.9 302 60.3
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 4.1e-91 339.0 278 63.3
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.2e-90 337.4 266 64.7
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 2.0e-90 336.7 264 64.8
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.0e-89 334.3 274 62.8
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.7e-89 333.6 314 58.0
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 6.5e-89 331.6 256 63.7
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.5e-89 331.3 303 59.7
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.1e-88 330.9 259 63.3
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.9e-88 330.1 313 58.1
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.2e-88 329.3 301 60.1
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 3.2e-88 329.3 320 56.6
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 5.5e-88 328.6 264 62.1
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.2e-87 327.4 262 61.5
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 2.1e-87 326.6 320 54.7
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 2.7e-87 326.2 266 62.4
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.6e-87 325.9 303 58.7
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 4.7e-87 325.5 266 63.2
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.4e-86 323.9 260 63.5
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.8e-86 323.6 329 54.4
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 4.0e-86 322.4 257 63.0
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.2e-85 320.9 266 60.9
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 3.4e-85 319.3 260 60.8
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.2e-84 316.6 257 62.3
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 3.7e-84 315.8 260 60.4
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 6.3e-84 315.1 262 63.0
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 8.3e-84 314.7 300 57.0
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.1e-83 314.3 304 58.6
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.4e-83 313.9 324 52.2
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 2.4e-83 313.2 254 61.8
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.4e-83 313.2 276 59.8
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 4.1e-83 312.4 312 55.8
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 4.1e-83 312.4 276 60.1
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 9.1e-83 311.2 364 50.5
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.6e-82 310.5 266 59.8
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.0e-82 310.1 259 59.5
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 4.5e-82 308.9 314 53.8
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 4.5e-82 308.9 325 53.5
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 4.5e-82 308.9 259 61.4
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 5.9e-82 308.5 252 63.5
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 1.0e-81 307.8 222 67.6
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 2.9e-81 306.2 257 59.5
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.5e-80 303.9 295 55.9
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 1.9e-80 303.5 243 62.1
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 3.2e-80 302.8 298 56.7
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 7.2e-80 301.6 332 50.9
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 2.7e-79 299.7 275 57.1
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 4.7e-79 298.9 308 51.0
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 6.1e-79 298.5 304 54.9
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 8.0e-79 298.1 257 57.6
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.0e-78 297.7 300 55.3
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.8e-78 297.0 338 51.2
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 1.8e-78 297.0 257 58.8
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 3.0e-78 296.2 306 54.6
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.0e-78 295.8 226 62.8
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 5.2e-78 295.4 220 64.5
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 6.8e-78 295.0 257 58.4
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 6.8e-78 295.0 310 52.6
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.2e-77 294.3 219 64.8
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 2.0e-77 293.5 222 65.8
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 3.4e-77 292.7 222 64.9
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 5.7e-77 292.0 340 50.6
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 5.7e-77 292.0 263 58.9
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 7.5e-77 291.6 315 50.8
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 4.9e-76 288.9 280 54.6
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 6.3e-76 288.5 301 53.8
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.1e-75 287.7 332 49.4
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.4e-75 287.3 291 54.3
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.8e-75 287.0 279 54.5
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 2.4e-75 286.6 332 49.4
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 3.1e-75 286.2 403 43.9
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 4.1e-75 285.8 262 55.3
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 4.1e-75 285.8 298 53.0
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 5.4e-75 285.4 259 55.6
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 7.0e-75 285.0 298 50.0
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.2e-74 284.3 310 50.6
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 2.0e-74 283.5 255 56.1
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.7e-74 283.1 282 54.3
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 2.7e-74 283.1 299 50.8
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 5.9e-74 282.0 299 50.8
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 5.9e-74 282.0 392 45.7
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.7e-73 280.4 299 52.8
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-73 280.0 259 55.2
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-73 280.0 305 49.8
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.3e-73 280.0 259 55.2
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 2.3e-73 280.0 335 46.6
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 2.9e-73 279.6 317 49.2
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 5.0e-73 278.9 295 52.5
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.9e-72 276.9 296 52.7
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.9e-72 276.9 296 54.7
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.5e-72 276.6 223 63.2
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 3.3e-72 276.2 294 52.7
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 1.2e-71 274.2 265 55.1
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 8.0e-71 271.6 294 52.0
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.8e-70 270.4 271 51.3
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 4.0e-70 269.2 233 57.5
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 5.2e-70 268.9 284 52.5
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 6.8e-70 268.5 272 52.6
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 8.9e-70 268.1 320 49.4
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-69 267.7 229 57.2
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.2e-69 267.7 290 51.7
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.2e-69 267.7 260 54.6
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.6e-69 266.5 256 54.3
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 3.4e-69 266.2 297 48.8
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.4e-69 266.2 272 52.6
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 9.8e-69 264.6 264 53.0
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.8e-67 260.4 217 57.6
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 2.7e-66 256.5 254 54.3
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.7e-65 253.8 269 50.6
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 5.0e-65 252.3 237 57.0
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.1e-64 251.1 222 57.7
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.5e-64 250.0 259 52.1
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.4e-62 244.2 195 65.1
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 6.8e-62 241.9 195 64.1
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 8.3e-60 235.0 257 51.0
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 1.3e-57 227.6 178 64.0
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.0e-57 226.5 200 57.5
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.7e-52 210.7 206 54.4
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 3.7e-52 209.5 206 53.9
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 6.4e-52 208.8 201 54.7
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.1e-51 208.0 209 53.1
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-51 208.0 206 53.4
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.4e-51 207.6 206 52.9
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.4e-51 206.8 212 52.4
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 4.1e-51 206.1 212 52.8
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.1e-50 203.8 165 62.4
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.5e-50 203.0 206 52.4
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 5.1e-49 199.1 210 51.4
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 1.5e-48 197.6 256 44.1
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.5e-48 197.6 214 49.5
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 2.5e-48 196.8 207 53.1
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 6.2e-47 192.2 226 48.7
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 1.8e-46 190.7 207 51.7
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 4.1e-43 179.5 141 62.4
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 5.4e-43 179.1 203 45.3
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.9e-40 170.6 166 50.6
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 6.2e-39 165.6 235 43.8
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.1e-38 164.9 140 61.4
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 2.2e-36 157.1 124 64.5
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 2.7e-34 150.2 260 37.3
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 6.0e-34 149.1 131 61.1
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 7.8e-34 148.7 136 58.1
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.7e-33 147.5 131 60.3
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-33 147.1 117 64.1
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 4.3e-32 142.9 120 63.3
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 2.1e-31 140.6 120 62.5
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 6.9e-30 135.6 234 38.0
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 7.6e-29 132.1 183 43.2
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 2.1e-26 124.0 148 45.3
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 6.7e-25 119.0 195 40.0
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 6.7e-25 119.0 189 40.2
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.1e-22 111.7 83 66.3
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.4e-21 106.7 76 65.8
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 3.8e-20 103.2 184 36.4
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.0e-17 95.1 95 52.6
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.8e-17 94.4 83 53.0
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 3.7e-15 86.7 82 51.2
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.4e-11 74.7 85 49.4
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 2.1e-10 70.9 175 36.6
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 1.1e-08 65.1 75 53.3
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.5e-08 63.9 57 54.4
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.3e-07 61.6 201 29.9
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 2.1e-07 60.8 154 34.4
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 6.3e-07 59.3 176 29.5
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 6.9e-06 55.8 60 43.3


User provided reference genes

Program Settings