Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 6.1e-158 560.8 297 100.0
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 5.4e-146 521.2 297 95.3
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 3.2e-106 389.0 271 76.4
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.0e-104 384.0 261 75.9
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 6.6e-104 381.3 301 70.1
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 4.3e-103 378.6 258 74.8
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 5.6e-103 378.3 251 76.9
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 9.6e-103 377.5 265 76.2
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 9.6e-103 377.5 229 82.1
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 9.6e-103 377.5 258 74.8
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.2e-102 377.1 257 76.3
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.6e-102 376.7 247 77.3
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 6.2e-102 374.8 266 73.3
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.1e-101 374.0 295 69.2
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 1.4e-101 373.6 243 77.4
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.8e-101 373.2 259 73.0
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.8e-101 373.2 243 77.4
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.8e-101 373.2 267 71.5
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 2.4e-101 372.9 267 73.0
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 2.4e-101 372.9 233 81.1
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 4.0e-101 372.1 233 82.0
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 5.3e-101 371.7 233 80.7
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 5.3e-101 371.7 237 78.9
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 6.9e-101 371.3 277 72.6
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.2e-100 370.5 244 77.5
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.0e-100 369.8 259 73.0
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.6e-100 369.4 233 78.5
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 2.6e-100 369.4 234 79.1
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 2.6e-100 369.4 244 77.5
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.6e-100 369.4 277 70.8
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 3.4e-100 369.0 264 73.1
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 3.4e-100 369.0 254 75.6
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.4e-100 369.0 228 81.1
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 5.8e-100 368.2 264 72.7
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 7.6e-100 367.9 243 77.0
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 7.6e-100 367.9 272 72.1
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.3e-99 367.1 244 75.4
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.7e-99 366.7 295 70.5
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.7e-99 366.7 229 80.3
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 2.9e-99 365.9 270 70.0
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 2.9e-99 365.9 259 73.0
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 2.9e-99 365.9 280 68.9
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 3.8e-99 365.5 223 83.4
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 4.9e-99 365.2 271 70.8
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.9e-99 365.2 260 73.5
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 4.9e-99 365.2 246 77.2
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.9e-99 365.2 247 78.5
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 6.4e-99 364.8 295 68.5
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 6.4e-99 364.8 229 79.5
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.1e-98 364.0 259 73.7
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.9e-98 363.2 276 69.2
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 4.2e-98 362.1 229 79.5
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.2e-98 362.1 248 76.2
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 7.1e-98 361.3 253 73.9
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 9.3e-98 360.9 246 75.2
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 9.3e-98 360.9 258 74.4
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 9.3e-98 360.9 287 68.3
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 2.1e-97 359.8 243 76.5
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.1e-97 359.8 255 73.7
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 2.1e-97 359.8 233 77.7
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 2.1e-97 359.8 266 71.4
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 2.1e-97 359.8 229 79.0
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 2.7e-97 359.4 285 67.7
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.7e-97 359.4 255 72.9
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 2.7e-97 359.4 249 74.3
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.0e-96 357.5 260 70.8
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.7e-96 356.7 260 71.9
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 2.3e-96 356.3 220 82.7
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.3e-96 356.3 260 71.9
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.3e-96 356.3 229 78.2
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 8.7e-96 354.4 247 75.7
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 2.5e-95 352.8 222 78.8
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 3.3e-95 352.4 260 71.5
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 7.3e-95 351.3 272 68.8
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 7.3e-95 351.3 233 76.0
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 2.1e-94 349.7 254 71.7
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 2.8e-94 349.4 257 71.6
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 2.8e-94 349.4 257 71.6
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 4.8e-94 348.6 256 71.5
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 4.8e-94 348.6 246 73.2
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 8.1e-94 347.8 247 72.5
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 8.1e-94 347.8 234 76.1
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.1e-93 347.4 231 77.5
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 2.4e-93 346.3 254 71.3
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 2.4e-93 346.3 254 71.3
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 2.4e-93 346.3 254 71.3
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 4.0e-93 345.5 299 63.5
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 6.9e-93 344.7 245 71.4
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 6.9e-93 344.7 248 71.8
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 9.0e-93 344.4 236 74.2
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.5e-92 343.6 295 64.7
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 3.4e-92 342.4 272 67.3
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 7.6e-92 341.3 264 68.6
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 7.6e-92 341.3 254 70.9
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 9.9e-92 340.9 247 70.9
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 2.9e-91 339.3 255 71.0
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 4.9e-91 338.6 255 71.4
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 6.4e-91 338.2 262 69.1
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 6.4e-91 338.2 262 69.1
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 3.2e-90 335.9 243 69.1
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.7e-89 332.8 265 66.0
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 3.5e-89 332.4 243 68.7
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.9e-87 326.6 258 65.5
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.9e-87 326.6 282 61.0
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.6e-87 325.1 260 66.9
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 7.4e-87 324.7 255 68.6
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 6.2e-86 321.6 252 67.5
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 3.4e-84 315.8 231 68.8
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 3.4e-84 315.8 200 78.0
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 1.9e-82 310.1 200 77.5
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.5e-82 309.7 215 72.1
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 7.1e-82 308.1 243 66.7
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.1e-81 306.6 259 62.2
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 6.7e-80 301.6 199 77.4
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 2.5e-79 299.7 200 74.5
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 1.8e-77 293.5 199 74.9
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 4.0e-77 292.4 268 61.2
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 5.3e-77 292.0 229 65.1
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 6.9e-77 291.6 200 74.0
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 9.0e-77 291.2 192 76.6
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.2e-76 290.8 229 69.0
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.5e-75 285.0 199 72.4
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 7.1e-74 281.6 201 72.1
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.2e-73 280.8 241 62.7
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 7.9e-73 278.1 227 64.3
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.9e-71 273.5 167 83.8
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 2.5e-71 273.1 237 61.6
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 1.3e-70 270.8 184 75.0
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.8e-70 269.6 197 72.1
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 1.4e-69 267.3 234 61.1
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 2.1e-65 253.4 258 55.4
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.6e-65 252.7 187 71.7
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 3.1e-61 239.6 227 55.9
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.6e-60 236.5 139 82.0
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 7.7e-60 235.0 234 53.8
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.3e-54 215.3 255 49.4
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.0e-51 208.0 146 71.9
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.7e-51 207.2 146 70.5
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 6.1e-49 198.7 146 69.9
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 4.4e-47 192.6 204 54.4
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.2e-44 184.5 131 71.0
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-43 180.6 147 66.0
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.7e-39 164.9 131 66.4
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 6.3e-38 162.2 158 60.1
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.5e-36 156.0 109 73.4
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.5e-36 156.0 109 73.4
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 8.0e-33 145.2 110 70.9
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 2.3e-32 143.7 124 61.3
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 8.3e-30 135.2 157 50.3
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.7e-27 127.5 74 83.8
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 6.6e-27 125.6 74 82.4
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 8.6e-27 125.2 74 82.4
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 1.1e-26 124.8 74 82.4
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.2e-26 122.9 74 79.7
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 5.7e-23 112.5 197 36.5
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.2e-21 106.7 71 76.1
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 1.3e-19 101.3 90 58.9
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.2e-17 94.7 64 75.0
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 8.9e-16 88.6 64 70.3
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 4.4e-15 86.3 63 73.0
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 2.9e-14 83.6 66 66.7
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 1.2e-12 78.2 44 84.1
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 2.0e-12 77.4 64 64.1
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 7.8e-12 75.5 54 77.8
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 3.9e-11 73.2 44 75.0
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.3e-10 69.7 64 56.2
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 2.6e-07 60.5 62 51.6
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 4.9e-06 56.2 263 27.4


User provided reference genes

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