Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 2.1e-194 682.2 340 100.0
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 2.3e-185 652.1 330 97.9
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 2.3e-140 502.7 344 73.3
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 8.6e-140 500.7 346 73.4
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 5.2e-137 491.5 337 71.5
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 8.9e-137 490.7 344 71.2
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 5.8e-136 488.0 343 70.6
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 7.5e-136 487.6 344 70.3
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 2.4e-134 482.6 342 69.9
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 5.4e-134 481.5 342 71.6
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 2.0e-133 479.6 342 69.3
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 1.5e-131 473.4 334 71.0
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 1.6e-130 469.9 343 68.8
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 4.7e-130 468.4 344 69.8
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 4.7e-130 468.4 342 68.1
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 2.3e-129 466.1 342 68.4
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 3.1e-129 465.7 333 69.7
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 5.2e-129 464.9 336 69.0
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 1.5e-128 463.4 343 68.5
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 1.3e-127 460.3 341 66.9
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 1.3e-127 460.3 333 68.5
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 1.3e-127 460.3 334 68.6
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 2.2e-127 459.5 343 67.1
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 2.9e-127 459.1 344 67.7
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 3.7e-127 458.8 341 66.3
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 2.4e-126 456.1 337 68.2
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 3.2e-126 455.7 341 67.2
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 3.2e-126 455.7 335 68.7
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 7.1e-126 454.5 342 68.1
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.2e-125 453.8 336 68.5
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 1.2e-125 453.8 330 68.8
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 1.6e-125 453.4 348 67.2
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 2.1e-125 453.0 343 66.2
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 2.7e-125 452.6 343 65.9
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 2.7e-125 452.6 348 64.4
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 2.7e-125 452.6 341 66.6
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 2.7e-125 452.6 344 66.0
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 3.5e-125 452.2 342 66.4
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 3.5e-125 452.2 345 67.8
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 4.6e-125 451.8 335 67.5
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 4.6e-125 451.8 348 67.0
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 6.0e-125 451.4 343 65.6
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 6.0e-125 451.4 336 67.9
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 7.8e-125 451.1 341 65.7
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 7.8e-125 451.1 339 66.7
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 7.8e-125 451.1 339 66.7
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 1.0e-124 450.7 347 66.6
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.3e-124 450.3 348 67.2
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 1.7e-124 449.9 342 65.2
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 3.0e-124 449.1 342 66.7
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 5.1e-124 448.4 344 66.6
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 6.6e-124 448.0 292 73.6
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 6.6e-124 448.0 344 65.1
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.1e-123 447.2 336 68.2
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 1.5e-123 446.8 335 67.5
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 1.5e-123 446.8 342 65.2
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 2.5e-123 446.0 348 65.5
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 3.3e-123 445.7 342 66.1
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 3.3e-123 445.7 338 66.0
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 4.3e-123 445.3 345 65.5
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 9.5e-123 444.1 343 65.3
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 9.5e-123 444.1 348 65.5
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.6e-122 443.4 343 66.5
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 2.1e-122 443.0 342 64.9
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 4.7e-122 441.8 334 65.6
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 8.1e-122 441.0 349 65.6
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.1e-121 440.7 344 65.1
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 1.4e-121 440.3 342 64.9
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 2.3e-121 439.5 348 63.8
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 3.1e-121 439.1 336 67.0
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 4.0e-121 438.7 343 65.6
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 5.2e-121 438.3 346 64.5
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 6.8e-121 438.0 341 65.7
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.5e-120 436.8 341 65.4
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 2.0e-120 436.4 341 64.2
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 2.6e-120 436.0 336 66.1
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 2.6e-120 436.0 344 64.8
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 4.4e-120 435.3 372 61.8
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 5.8e-120 434.9 341 64.2
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 7.6e-120 434.5 342 64.3
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 9.9e-120 434.1 342 64.6
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 1.3e-119 433.7 384 60.4
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 1.7e-119 433.3 343 63.6
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 2.9e-119 432.6 330 66.1
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 3.7e-119 432.2 351 62.1
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 3.7e-119 432.2 337 63.5
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 4.9e-119 431.8 344 63.4
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 1.1e-118 430.6 345 63.2
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 1.4e-118 430.3 370 61.1
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 7.1e-118 427.9 348 62.9
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 2.1e-117 426.4 350 61.7
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 6.0e-117 424.9 345 62.3
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 7.8e-117 424.5 351 63.2
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 7.8e-117 424.5 372 60.5
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.0e-116 424.1 326 63.2
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 1.9e-115 419.9 348 62.6
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 5.6e-115 418.3 339 62.8
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 7.3e-115 417.9 410 55.4
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 1.2e-114 417.2 355 60.0
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 1.1e-113 414.1 355 60.3
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 1.8e-113 413.3 354 60.2
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 1.5e-112 410.2 320 64.4
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 2.0e-112 409.8 320 64.4
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 3.8e-111 405.6 317 65.0
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.1e-110 404.1 343 60.9
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.2e-110 402.5 338 61.2
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 3.2e-110 402.5 338 61.2
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 6.0e-109 398.3 381 57.7
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.7e-108 396.7 333 61.6
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.7e-108 396.7 342 60.5
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 1.9e-107 393.3 342 60.8
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 3.3e-107 392.5 274 70.8
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 2.1e-106 389.8 315 63.2
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 1.1e-105 387.5 355 56.3
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 9.0e-105 384.4 260 72.7
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 1.7e-103 380.2 355 55.5
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 1.1e-99 367.5 263 68.8
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 1.5e-99 367.1 250 71.6
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 3.1e-97 359.4 354 53.1
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.7e-95 353.6 242 70.2
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 3.2e-94 349.4 275 66.2
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 5.3e-89 332.0 367 51.0
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 7.6e-88 328.2 347 53.0
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 4.3e-83 312.4 347 51.3
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 1.7e-79 300.4 312 51.3
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 8.5e-71 271.6 216 64.8
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 4.6e-69 265.8 260 53.8
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 8.2e-66 255.0 340 46.5
Sed0025807 Sechium edule HOM05D004236 ORTHO05D004903 3.3e-59 233.0 160 72.5
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 1.1e-51 208.0 236 51.3
HPP92_023113 Vanilla planifolia HOM05D004236 ORTHO05D004903 7.5e-51 205.3 146 65.8
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 1.1e-49 201.4 502 30.5
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.3e-47 194.5 166 60.8
Sed0017902 Sechium edule HOM05D004236 ORTHO05D004903 3.7e-42 176.4 185 53.5
BcaB08g34729 Brassica carinata HOM05D000498 ORTHO05D000354 9.1e-41 171.8 138 60.9
BcaB06g28281 Brassica carinata HOM05D004236 ORTHO05D004903 5.9e-40 169.1 133 62.4
Oeu048228.1 Olea europaea HOM05D004236 ORTHO05D004903 3.2e-38 163.3 116 69.8
Sopen03g007300 Solanum pennellii HOM05D004236 ORTHO05D004903 4.0e-36 156.4 125 64.8
THA.LOC104822507 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 2.6e-35 153.7 117 69.2
Oeu038787.1 Olea europaea HOM05D004236 ORTHO05D004903 9.1e-33 145.2 110 64.5
HPP92_027367 Vanilla planifolia HOM05D000680 ORTHO05D000738 3.5e-32 143.3 149 53.7
SEGI_28739 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 9.2e-25 118.6 136 46.3
SHI07804 Sapria himalayana HOM05D004236 ORTHO05D004903 5.9e-24 115.9 212 35.8
HPP92_023117 Vanilla planifolia HOM05D004236 ORTHO05D004903 5.6e-22 109.4 170 44.1
Lsat_1_v5_gn_0_260 Lactuca sativa HOM05D004236 ORTHO05D004903 8.9e-20 102.1 138 43.5
Lsat_1_v5_gn_0_31400 Lactuca sativa HOM05D004236 ORTHO05D004903 8.9e-20 102.1 138 43.5
Lsat_1_v5_gn_3_124540 Lactuca sativa HOM05D004236 ORTHO05D004903 8.9e-20 102.1 138 43.5
Lsat_1_v5_gn_3_86660 Lactuca sativa HOM05D004236 ORTHO05D004903 8.9e-20 102.1 138 43.5
BcaB01g01715 Brassica carinata HOM05D004236 ORTHO05D004903 1.2e-19 101.7 83 63.9
SEGI_26756 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 6.4e-18 95.9 89 56.2
SEGI_21262 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 1.9e-17 94.4 97 47.4
BcaC03g14751 Brassica carinata HOM05D004236 ORTHO05D032721 9.2e-17 92.0 59 71.2
Os01g0686400 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 1.2e-16 91.7 79 58.2
Actinidia13574 Actinidia chinensis HOM05D004236 ORTHO05D004903 2.0e-16 90.9 76 68.4
Nitab4.5_0000901g0080 Nicotiana tabacum HOM05D004236 ORTHO05D000001 2.0e-16 90.9 75 66.7
Potri.012G068600 Populus trichocarpa HOM05D004236 ORTHO05D004903 4.6e-16 89.7 56 73.2
arahy.Tifrunner.gnm1.ann1.YBT00D Arachis hypogaea HOM05D004236 ORTHO05D019770 1.2e-13 81.6 109 40.4
Potri.012G068550 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.2e-13 81.6 80 60.0
arahy.Tifrunner.gnm1.ann1.2X7NJS Arachis hypogaea HOM05D004236 ORTHO05D004903 3.6e-13 80.1 72 54.2
Cfa026028 Carpinus fangiana HOM05D004236 ORTHO05D004903 3.6e-13 80.1 249 31.7
arahy.Tifrunner.gnm1.ann1.RD0JM0 Arachis hypogaea HOM05D004236 ORTHO05D004903 1.2e-11 75.1 72 51.4
SHI07812 Sapria himalayana HOM05D004236 ORTHO05D004903 3.4e-11 73.6 74 54.1
Lsat_1_v5_gn_2_36660 Lactuca sativa HOM05D004236 ORTHO05D004903 1.4e-09 68.2 66 51.5
Hma1.2p1_1189F.1_g265360 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 7.1e-09 65.9 59 54.2
Hma1.2p1_0027F.1_g017210 Hydrangea macrophylla HOM05D001472 ORTHO05D004903 6.0e-08 62.8 34 82.4
Hma1.2p1_0071F.1_g038110 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 1.3e-07 61.6 34 79.4
SHI07808 Sapria himalayana HOM05D004236 ORTHO05D004903 1.7e-07 61.2 71 45.1
BraA02t06426Z Brassica rapa HOM05D004236 ORTHO05D004903 5.1e-07 59.7 39 66.7
CsaV3_7G030680 Cucumis sativus L. HOM05D002688 ORTHO05D002911 1.1e-06 58.5 115 27.0
Atru.chr5.2922 Acer truncatum HOM05D007147 ORTHO05D009166 1.5e-06 58.2 167 25.1
Aqoxy5G01730 Aquilegia oxysepala HOM05D007147 ORTHO05D009166 2.5e-06 57.4 81 39.5
SHI07811 Sapria himalayana HOM05D004236 ORTHO05D004903 3.3e-06 57.0 43 58.1
Gohir.D08G162500 Gossypium hirsutum HOM05D002688 ORTHO05D002911 5.6e-06 56.2 107 29.9
Gorai.004G168900 Gossypium raimondii HOM05D002688 ORTHO05D002911 5.6e-06 56.2 107 29.9
TWI31G1240 Tripterygium wilfordii HOM05D007147 ORTHO05D009166 7.3e-06 55.8 114 30.7
unitig_736.g22563 Utricularia gibba HOM05D004236 ORTHO05D004903 9.5e-06 55.5 47 61.7


User provided reference genes

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