Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 0.0e+00 2261.1 1151 100.0
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 0.0e+00 2052.7 1151 91.4
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 0.0e+00 1399.8 782 93.7
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.9e-280 969.1 1169 48.6
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.3e-277 960.3 1168 48.2
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 1.6e-267 926.8 1169 45.7
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 8.4e-256 887.9 1175 44.9
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 9.3e-255 884.4 1178 45.5
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 3.7e-251 872.5 1178 45.2
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 9.0e-250 867.8 1174 44.1
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 1.3e-243 847.4 1012 48.3
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 3.1e-242 842.8 1266 43.4
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 4.4e-236 822.4 1174 42.8
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 5.7e-236 822.0 1185 43.0
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 1.2e-233 814.3 1179 42.7
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 1.5e-233 813.9 1179 42.7
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 6.5e-232 808.5 1180 42.6
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 1.9e-231 807.0 1179 42.2
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 5.9e-225 785.4 1162 41.6
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.9e-223 780.4 1177 40.4
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 2.1e-222 776.9 1155 41.9
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 7.0e-218 761.9 1147 41.3
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 1.6e-217 760.8 1180 40.9
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 2.0e-217 760.4 1164 40.5
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 9.4e-215 751.5 979 46.3
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 6.8e-213 745.3 1190 40.1
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.4e-210 737.6 1174 40.1
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 5.4e-210 735.7 1172 40.1
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 6.6e-208 728.8 1158 39.3
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 1.6e-206 724.2 1207 39.2
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 2.1e-206 723.8 1210 39.1
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 3.0e-205 719.9 1163 39.6
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 8.3e-203 711.8 1192 39.5
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.8e-202 710.7 1179 38.9
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 7.0e-202 708.8 1169 38.5
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 2.7e-201 706.8 1172 39.2
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.0e-200 704.9 1188 38.9
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 4.3e-199 699.5 1180 38.3
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.8e-197 694.1 1176 37.8
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 1.7e-195 687.6 1182 38.2
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 3.7e-195 686.4 1221 37.9
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 1.1e-194 684.9 1176 37.9
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 6.0e-193 679.1 1174 38.3
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 6.0e-193 679.1 1161 38.4
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 3.0e-192 676.8 1175 38.5
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.1e-191 674.9 1166 37.0
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 4.3e-191 672.9 1176 37.5
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 4.3e-191 672.9 1176 37.5
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.6e-190 671.0 1157 38.3
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 1.1e-189 668.3 1182 37.7
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 1.2e-188 664.8 1158 38.2
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.5e-188 664.5 1172 38.2
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 2.2e-187 660.6 1110 39.7
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 7.1e-186 655.6 1177 38.3
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 4.6e-185 652.9 1139 36.8
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.2e-182 644.8 1182 38.3
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 1.1e-181 641.7 1166 36.2
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 3.1e-181 640.2 1177 36.2
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 2.0e-180 637.5 1109 38.8
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 9.9e-180 635.2 1180 36.3
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 9.2e-178 628.6 993 41.5
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 9.2e-178 628.6 1168 36.8
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 3.9e-176 623.2 1176 36.7
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 2.1e-174 617.5 1158 34.9
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 8.1e-174 615.5 1182 35.5
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.4e-173 614.8 1182 37.6
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 1.5e-172 611.3 1175 36.1
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 4.4e-172 609.8 1192 35.9
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 4.9e-171 606.3 1169 34.7
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.4e-170 604.0 1161 34.9
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 1.6e-169 601.3 1161 34.5
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.1e-169 600.9 1159 35.3
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 6.0e-169 599.4 1161 34.1
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 1.0e-168 598.6 1173 34.5
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 1.7e-168 597.8 1166 34.8
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 1.9e-167 594.3 1162 34.4
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 3.6e-166 590.1 1215 34.0
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 6.2e-166 589.3 1162 34.5
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 1.8e-165 587.8 1158 34.2
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 4.9e-163 579.7 1051 38.0
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 2.1e-158 564.3 1161 34.0
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 4.8e-158 563.1 949 39.0
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 1.2e-156 558.5 1162 34.7
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 7.6e-156 555.8 1159 33.2
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 2.9e-155 553.9 1159 33.4
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 5.3e-149 533.1 1166 33.9
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 3.4e-148 530.4 1172 32.5
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 3.2e-146 523.9 1117 34.3
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 3.2e-146 523.9 1257 31.3
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 1.3e-144 518.5 928 38.9
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 1.3e-142 511.9 1141 34.0
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 8.5e-131 472.6 1234 29.2
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 5.3e-125 453.4 904 35.8
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.2e-121 442.2 978 32.6
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 5.3e-117 426.8 685 39.0
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 3.6e-105 387.5 905 31.7
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 2.3e-91 341.7 446 44.6
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.1e-90 339.3 904 30.6
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 2.5e-90 338.2 200 85.0
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 2.1e-89 335.1 1282 26.3
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 6.1e-89 333.6 1274 26.6
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 5.8e-79 300.4 309 53.4
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 1.6e-76 292.4 301 52.8
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 2.0e-76 292.0 299 54.2
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 6.6e-75 287.0 299 52.8
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 6.6e-75 287.0 301 52.2
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 5.6e-74 283.9 299 52.8
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 4.0e-72 277.7 1136 26.8
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 4.4e-71 274.2 440 39.3
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.1e-69 269.6 274 54.0
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 9.2e-69 266.5 235 57.9
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 2.1e-65 255.4 330 44.2
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 6.8e-64 250.4 330 43.6
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.7e-62 245.7 235 54.9
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.7e-62 245.7 301 47.2
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 7.1e-61 240.4 435 38.4
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.6e-57 229.2 513 33.7
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 6.9e-56 223.8 372 39.5
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 5.1e-51 207.6 175 61.7
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 1.3e-49 203.0 410 35.6
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 1.6e-49 202.6 175 57.7
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.1e-48 198.4 174 56.9
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 6.0e-44 184.1 167 56.9
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 1.1e-42 179.9 187 50.8
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 1.5e-42 179.5 175 53.1
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 3.3e-42 178.3 400 34.0
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 1.2e-36 159.8 412 29.4
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.1e-35 154.5 234 38.5
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 3.2e-29 135.2 244 36.1
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.1e-26 126.7 435 27.8
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 1.1e-26 126.7 128 54.7
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 9.3e-21 107.1 300 29.0
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.7e-20 105.5 104 53.8
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 6.7e-19 100.9 105 51.4
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 5.7e-18 97.8 227 32.6
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.1e-16 92.0 304 28.0
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 6.5e-14 84.3 100 49.0
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 4.2e-13 81.6 135 37.8
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 7.2e-13 80.9 85 52.9
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 3.7e-09 68.6 45 66.7
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 4.8e-09 68.2 49 61.2
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 8.2e-09 67.4 45 64.4
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 2.2e-06 59.3 63 50.8
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 3.8e-06 58.5 79 38.0
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 5.0e-06 58.2 78 38.5


User provided reference genes

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