Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 1.0e-38 162.9 81 100.0
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 4.7e-28 127.5 89 78.7
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.5e-21 105.1 81 69.1
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.6e-20 102.4 82 67.1
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 5.2e-19 97.4 83 62.7
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 5.2e-19 97.4 81 63.0
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.0e-18 95.5 86 64.0
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 7.5e-18 93.6 86 62.8
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.2e-17 92.0 86 62.8
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.2e-17 92.0 86 62.8
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 2.2e-17 92.0 85 62.4
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 2.2e-17 92.0 90 58.9
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 2.2e-17 92.0 84 61.9
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 2.9e-17 91.7 84 61.9
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 1.9e-16 89.0 89 59.6
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 1.9e-16 89.0 81 61.7
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 2.4e-16 88.6 87 54.0
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 3.2e-16 88.2 78 64.1
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 4.1e-16 87.8 79 55.7
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.2e-15 86.3 74 59.5
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.6e-15 85.9 77 58.4
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.0e-15 85.5 86 58.1
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.0e-15 85.5 86 58.1
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 4.6e-15 84.3 89 57.3
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 4.6e-15 84.3 72 59.7
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 6.0e-15 84.0 86 58.1
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.3e-14 82.0 71 63.4
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 3.0e-14 81.6 76 57.9
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 3.9e-14 81.3 73 63.0
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 5.0e-14 80.9 90 56.7
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 8.6e-14 80.1 87 55.2
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 1.5e-13 79.3 73 57.5
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.9e-13 79.0 82 53.7
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.5e-13 78.6 83 59.0
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 3.3e-13 78.2 87 55.2
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 3.3e-13 78.2 82 53.7
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 4.3e-13 77.8 72 55.6
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 5.6e-13 77.4 86 54.7
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 7.3e-13 77.0 86 50.0
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 7.3e-13 77.0 78 57.7
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 9.5e-13 76.6 69 60.9
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 1.2e-12 76.3 84 53.6
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 1.2e-12 76.3 84 54.8
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.2e-12 76.3 83 55.4
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.6e-12 74.7 84 52.4
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 6.2e-12 73.9 76 55.3
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 6.2e-12 73.9 75 56.0
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 6.2e-12 73.9 71 57.7
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 8.1e-12 73.6 84 52.4
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 8.1e-12 73.6 78 53.8
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.8e-11 72.4 84 51.2
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 2.3e-11 72.0 85 50.6
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 2.3e-11 72.0 72 52.8
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 3.1e-11 71.6 73 53.4
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 3.1e-11 71.6 86 50.0
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.1e-11 71.6 92 53.3
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 3.1e-11 71.6 68 57.4
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 4.0e-11 71.2 73 53.4
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 5.2e-11 70.9 74 51.4
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 5.2e-11 70.9 81 53.1
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 5.2e-11 70.9 70 57.1
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 5.2e-11 70.9 84 52.4
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 6.8e-11 70.5 86 53.5
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 6.8e-11 70.5 84 51.2
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 6.8e-11 70.5 77 51.9
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 8.9e-11 70.1 75 54.7
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 8.9e-11 70.1 94 48.9
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 8.9e-11 70.1 75 50.7
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 8.9e-11 70.1 83 49.4
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 1.2e-10 69.7 85 51.8
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.5e-10 69.3 84 52.4
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 1.5e-10 69.3 84 52.4
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 1.5e-10 69.3 84 51.2
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.0e-10 68.9 81 51.9
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 2.6e-10 68.6 84 52.4
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 3.4e-10 68.2 78 47.4
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 3.4e-10 68.2 79 46.8
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.4e-10 68.2 94 50.0
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.4e-10 68.2 71 56.3
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 4.4e-10 67.8 78 50.0
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 4.4e-10 67.8 83 49.4
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 5.8e-10 67.4 73 50.7
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 5.8e-10 67.4 68 57.4
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 7.5e-10 67.0 86 52.3
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 9.9e-10 66.6 73 49.3
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 9.9e-10 66.6 71 52.1
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 9.9e-10 66.6 74 54.1
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 1.7e-09 65.9 85 48.2
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.7e-09 65.9 95 48.4
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 2.9e-09 65.1 83 49.4
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 2.9e-09 65.1 77 53.2
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 2.9e-09 65.1 73 50.7
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.7e-09 64.7 92 46.7
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 3.7e-09 64.7 84 50.0
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 3.7e-09 64.7 70 50.0
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 6.4e-09 63.9 84 45.2
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 6.4e-09 63.9 77 50.6
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 6.4e-09 63.9 82 50.0
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 8.3e-09 63.5 84 45.2
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 8.3e-09 63.5 90 51.1
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 8.3e-09 63.5 85 50.6
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 1.1e-08 63.2 73 49.3
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 1.1e-08 63.2 73 49.3
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 1.1e-08 63.2 73 49.3
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 1.1e-08 63.2 73 49.3
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.1e-08 63.2 81 48.1
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.1e-08 63.2 83 47.0
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.4e-08 62.8 78 52.6
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 1.9e-08 62.4 78 46.2
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.9e-08 62.4 77 51.9
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 1.9e-08 62.4 74 51.4
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 2.4e-08 62.0 85 43.5
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 3.2e-08 61.6 92 47.8
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 4.1e-08 61.2 85 44.7
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 7.1e-08 60.5 72 47.2
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 7.1e-08 60.5 72 47.2
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 9.2e-08 60.1 45 66.7
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 9.2e-08 60.1 85 47.1
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 9.2e-08 60.1 89 41.6
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 9.2e-08 60.1 85 48.2
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 9.2e-08 60.1 86 48.8
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 1.2e-07 59.7 72 50.0
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.2e-07 59.7 83 44.6
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 1.2e-07 59.7 79 50.6
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.2e-07 59.7 85 47.1
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 1.6e-07 59.3 82 45.1
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 1.6e-07 59.3 69 46.4
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.6e-07 59.3 81 46.9
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.6e-07 59.3 81 46.9
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.6e-07 59.3 53 62.3
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 2.1e-07 58.9 84 41.7
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 2.1e-07 58.9 84 41.7
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 2.1e-07 58.9 85 45.9
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 2.1e-07 58.9 74 47.3
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 2.7e-07 58.5 73 49.3
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 3.5e-07 58.2 85 43.5
Ca_26471_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 3.5e-07 58.2 84 41.7
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 3.5e-07 58.2 73 47.9
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 4.6e-07 57.8 84 44.0
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 6.0e-07 57.4 84 46.4
PSO210G7277 Papaver somniferum HOM05D003533 ORTHO05D004009 6.0e-07 57.4 43 67.4
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 6.0e-07 57.4 74 50.0
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 7.8e-07 57.0 79 48.1
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 7.8e-07 57.0 87 41.4
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 7.8e-07 57.0 73 50.7
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 1.0e-06 56.6 82 46.3
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 1.0e-06 56.6 90 45.6
Gohir.D12G053600 Gossypium hirsutum HOM05D019532 ORTHO05D025681 3.0e-06 55.1 88 40.9
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 5.1e-06 54.3 72 45.8
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 5.1e-06 54.3 68 42.6
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 5.1e-06 54.3 68 42.6
Actinidia09718 Actinidia chinensis HOM05D007037 ORTHO05D006691 6.6e-06 53.9 78 41.0
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 8.6e-06 53.5 44 56.8
Peaxi162Scf00017g00254 Petunia axillaris HOM05D003533 ORTHO05D004009 8.6e-06 53.5 53 54.7
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 8.6e-06 53.5 83 38.6


User provided reference genes

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