Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 4.4e-203 711.1 357 100.0
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 7.6e-54 215.3 207 54.6
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 1.5e-46 191.0 273 42.1
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 9.9e-46 188.3 274 43.1
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 1.9e-41 174.1 278 39.6
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 3.3e-41 173.3 275 40.7
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 2.4e-39 167.2 274 39.1
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 3.1e-39 166.8 274 38.3
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 4.0e-39 166.4 274 38.7
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 1.2e-38 164.9 289 37.4
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 2.0e-38 164.1 272 37.9
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 2.0e-38 164.1 272 37.5
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 2.6e-38 163.7 272 37.1
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 3.4e-38 163.3 272 38.2
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 5.8e-38 162.5 281 38.1
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 5.8e-38 162.5 272 38.6
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 5.8e-38 162.5 272 38.6
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 5.8e-38 162.5 272 38.6
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 5.8e-38 162.5 272 39.0
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 5.8e-38 162.5 274 39.1
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 7.6e-38 162.2 272 37.1
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 7.6e-38 162.2 276 38.8
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 7.6e-38 162.2 272 36.8
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 1.3e-37 161.4 274 38.0
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 1.3e-37 161.4 289 37.7
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 1.7e-37 161.0 272 39.0
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 1.7e-37 161.0 274 38.0
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 1.7e-37 161.0 272 37.9
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 2.2e-37 160.6 274 38.3
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 2.2e-37 160.6 274 38.3
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 2.2e-37 160.6 272 38.2
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 2.2e-37 160.6 272 37.9
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 2.9e-37 160.2 272 38.2
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 2.9e-37 160.2 272 38.6
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 3.8e-37 159.8 282 37.9
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 3.8e-37 159.8 272 38.2
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 3.8e-37 159.8 287 37.3
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 3.8e-37 159.8 272 38.6
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 3.8e-37 159.8 272 37.5
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 4.9e-37 159.5 274 36.9
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 6.4e-37 159.1 272 37.5
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 6.4e-37 159.1 272 37.9
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 6.4e-37 159.1 272 38.2
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 8.4e-37 158.7 272 37.5
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 1.4e-36 157.9 274 39.1
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 1.4e-36 157.9 274 37.6
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 1.9e-36 157.5 272 37.1
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 2.4e-36 157.1 272 38.2
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 2.4e-36 157.1 272 36.8
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 2.4e-36 157.1 290 36.6
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 3.2e-36 156.8 274 37.6
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 3.2e-36 156.8 292 36.0
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 4.2e-36 156.4 272 37.9
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 4.2e-36 156.4 274 36.5
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 5.4e-36 156.0 272 37.5
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 5.4e-36 156.0 272 36.8
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 5.4e-36 156.0 280 36.4
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 7.1e-36 155.6 274 38.3
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 7.1e-36 155.6 272 37.1
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 7.1e-36 155.6 274 37.2
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 9.3e-36 155.2 213 41.3
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 9.3e-36 155.2 274 37.2
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 9.3e-36 155.2 272 36.4
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 9.3e-36 155.2 277 36.8
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 9.3e-36 155.2 272 36.8
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 1.6e-35 154.5 272 39.0
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 2.7e-35 153.7 272 36.8
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 2.7e-35 153.7 272 35.7
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 3.5e-35 153.3 274 36.1
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 3.5e-35 153.3 274 36.9
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 3.5e-35 153.3 283 37.5
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 3.5e-35 153.3 272 36.8
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 3.5e-35 153.3 271 36.2
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 6.0e-35 152.5 272 37.5
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 1.0e-34 151.8 277 36.8
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 1.3e-34 151.4 272 35.7
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 1.3e-34 151.4 283 37.1
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 1.3e-34 151.4 274 38.3
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 1.8e-34 151.0 276 37.3
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 1.8e-34 151.0 274 35.8
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 1.8e-34 151.0 272 37.1
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 1.8e-34 151.0 272 36.8
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 2.3e-34 150.6 283 37.1
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 2.3e-34 150.6 278 36.7
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 2.3e-34 150.6 278 36.7
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 3.9e-34 149.8 276 35.5
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 3.9e-34 149.8 283 37.1
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 5.1e-34 149.4 279 35.1
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 8.7e-34 148.7 272 36.8
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 1.1e-33 148.3 319 34.5
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 1.5e-33 147.9 274 35.8
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.5e-33 147.9 272 37.1
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.5e-33 147.9 272 37.1
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 1.5e-33 147.9 272 35.7
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 1.9e-33 147.5 272 36.0
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 1.9e-33 147.5 278 35.6
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 2.5e-33 147.1 274 36.5
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 4.3e-33 146.4 205 41.0
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 5.6e-33 146.0 235 39.1
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 9.6e-33 145.2 356 32.6
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 1.3e-32 144.8 229 40.6
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 1.6e-32 144.4 228 41.2
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 3.1e-31 140.2 212 39.2
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 3.1e-31 140.2 276 34.1
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 4.0e-31 139.8 307 33.2
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 5.3e-31 139.4 272 35.3
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 5.3e-31 139.4 308 32.8
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 9.0e-31 138.7 272 34.9
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 1.2e-30 138.3 314 32.8
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 1.2e-30 138.3 274 35.0
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 1.2e-30 138.3 272 35.7
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 1.5e-30 137.9 281 34.2
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 2.6e-30 137.1 274 34.7
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.2e-29 134.0 237 35.4
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 5.5e-28 129.4 272 33.5
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 7.1e-28 129.0 235 36.6
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 2.1e-27 127.5 170 41.8
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 2.1e-27 127.5 204 42.2
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 3.5e-27 126.7 204 39.7
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 1.3e-26 124.8 202 41.1
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 1.3e-26 124.8 201 39.3
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 1.3e-26 124.8 201 39.3
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 2.3e-26 124.0 312 31.1
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 1.9e-25 120.9 174 42.5
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.2e-22 111.7 283 32.2
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 1.7e-21 107.8 290 32.8
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 7.1e-20 102.4 282 31.9
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 6.9e-15 85.9 167 37.7
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 6.5e-13 79.3 162 35.2
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 6.5e-13 79.3 157 35.0
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 7.9e-11 72.4 169 29.0
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 1.8e-07 61.2 124 34.7


User provided reference genes

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