Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 3.8e-304 1047.3 529 100.0
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 4.8e-113 412.5 514 47.3
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 3.8e-110 402.9 464 50.4
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 6.2e-28 129.8 532 29.3
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 1.4e-24 118.6 552 28.6
CBR_g40184 Chara braunii HOM05D013921 ORTHO05D014814 5.1e-22 110.2 563 27.5
CBR_g38300 Chara braunii HOM05D013921 ORTHO05D014814 6.6e-22 109.8 560 27.7
AagrBONN_evm.TU.Sc2ySwM_117.1486 Anthoceros agrestis HOM05D013921 ORTHO05D014814 7.3e-21 106.3 497 27.4
Mapoly0016s0181 Marchantia polymorpha HOM05D013921 ORTHO05D014814 1.3e-20 105.5 490 28.0
SMO347G0275 Selaginella moellendorffii HOM05D013921 ORTHO05D014814 8.1e-20 102.8 504 28.0
MCO06G109 Micromonas commoda HOM05D013921 ORTHO05D014814 9.0e-19 99.4 587 28.6
Pp3c19_11010 Physcomitrium patens HOM05D013921 ORTHO05D014814 7.1e-16 89.7 349 28.7
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.7e-09 68.6 418 24.4
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 2.9e-09 67.8 433 24.7
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 4.9e-09 67.0 546 24.7
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 6.4e-09 66.6 419 24.1
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 3.2e-08 64.3 491 24.4
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 3.2e-08 64.3 427 23.9
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 3.2e-08 64.3 237 28.7
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 3.2e-08 64.3 514 24.3
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 4.2e-08 63.9 420 24.5
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 4.2e-08 63.9 432 24.5
Mapoly0004s0005 Marchantia polymorpha HOM05D003206 ORTHO05D005207 5.4e-08 63.5 502 24.5
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 5.4e-08 63.5 435 24.1
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 9.3e-08 62.8 531 25.6
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 2.1e-07 61.6 498 23.1
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 2.1e-07 61.6 228 28.9
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 2.7e-07 61.2 532 23.9
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 2.7e-07 61.2 534 24.0
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 2.7e-07 61.2 536 24.1
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 3.5e-07 60.8 529 23.6
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 3.5e-07 60.8 527 24.1
DCAR_025524 Daucus carota HOM05D003206 ORTHO05D005207 6.0e-07 60.1 498 23.7
Lj3g0014011 Lotus japonicus HOM05D003206 ORTHO05D005207 6.0e-07 60.1 507 25.0
Sabra03G0017400 Salix brachista HOM05D003206 ORTHO05D005207 6.0e-07 60.1 498 25.1
CDE02G1563 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 7.9e-07 59.7 503 23.9
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 7.9e-07 59.7 435 23.7
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 7.9e-07 59.7 530 23.4
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 7.9e-07 59.7 514 23.5
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 1.0e-06 59.3 515 24.1
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.0e-06 59.3 528 24.1
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 1.0e-06 59.3 503 24.9
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 1.0e-06 59.3 523 24.1
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.3e-06 58.9 238 29.4
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 1.3e-06 58.9 439 23.7
CDE04G3165 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 1.8e-06 58.5 504 24.0
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.8e-06 58.5 530 24.0
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.8e-06 58.5 531 23.5
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 2.3e-06 58.2 534 24.2
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 3.0e-06 57.8 514 25.5
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.0e-06 57.8 236 26.7
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 3.9e-06 57.4 433 23.3
Zm00001eb068580 Zea mays HOM05D003206 ORTHO05D005207 3.9e-06 57.4 499 23.8
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 5.1e-06 57.0 502 24.5
Lalb_Chr04g0262301 Lupinus albus HOM05D003206 ORTHO05D005207 5.1e-06 57.0 498 23.7
Os04g0647800 Oryza sativa ssp. japonica HOM05D003206 ORTHO05D005207 5.1e-06 57.0 499 23.6
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 6.7e-06 56.6 480 21.9
CiPaw.01G250100 Carya illinoinensis HOM05D003206 ORTHO05D005207 6.7e-06 56.6 516 24.4
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 6.7e-06 56.6 407 23.1
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 6.7e-06 56.6 530 24.2
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 8.7e-06 56.2 531 23.4
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 8.7e-06 56.2 532 23.3
QL05p032185 Quercus lobata HOM05D003206 ORTHO05D005207 8.7e-06 56.2 532 24.1


User provided reference genes

Program Settings