Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 2.0e-200 702.2 358 100.0
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 3.5e-35 153.3 189 42.9
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 4.6e-35 152.9 190 39.5
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.0e-34 151.8 194 39.7
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 1.3e-34 151.4 203 40.9
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 1.8e-34 151.0 202 38.1
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 2.3e-34 150.6 205 38.5
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 3.9e-34 149.8 191 39.8
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 5.1e-34 149.4 196 39.3
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.1e-34 149.4 196 39.3
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 6.7e-34 149.1 190 42.1
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 6.7e-34 149.1 191 41.4
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 6.7e-34 149.1 196 39.3
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 6.7e-34 149.1 191 39.8
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 6.7e-34 149.1 201 39.8
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 6.7e-34 149.1 191 39.8
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 8.7e-34 148.7 191 39.8
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 1.1e-33 148.3 189 40.2
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 1.1e-33 148.3 189 40.2
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.1e-33 148.3 191 39.8
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 1.1e-33 148.3 192 39.6
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 1.1e-33 148.3 190 41.6
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.5e-33 147.9 215 37.7
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.5e-33 147.9 196 38.8
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 1.5e-33 147.9 199 40.2
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 1.5e-33 147.9 191 40.3
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 1.9e-33 147.5 191 39.3
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.9e-33 147.5 202 39.1
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 1.9e-33 147.5 191 41.9
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 1.9e-33 147.5 190 41.6
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.9e-33 147.5 190 40.5
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 2.5e-33 147.1 191 39.8
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 2.5e-33 147.1 216 38.0
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 2.5e-33 147.1 199 40.2
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 2.5e-33 147.1 206 38.3
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 3.3e-33 146.7 191 38.7
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 3.3e-33 146.7 191 39.3
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 3.3e-33 146.7 191 39.8
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 3.3e-33 146.7 189 40.2
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 3.3e-33 146.7 207 38.6
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 4.3e-33 146.4 202 36.1
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 4.3e-33 146.4 191 40.8
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 4.3e-33 146.4 191 39.3
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 5.6e-33 146.0 190 40.0
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 5.6e-33 146.0 191 38.7
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 5.6e-33 146.0 191 37.7
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 5.6e-33 146.0 196 38.8
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 5.6e-33 146.0 205 36.6
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 7.4e-33 145.6 194 36.6
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 7.4e-33 145.6 192 38.5
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 9.6e-33 145.2 191 40.8
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 9.6e-33 145.2 191 41.4
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 9.6e-33 145.2 191 41.4
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 1.3e-32 144.8 191 39.8
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.3e-32 144.8 198 37.9
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 1.3e-32 144.8 191 38.7
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 1.6e-32 144.4 183 37.7
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 2.1e-32 144.1 191 37.2
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 2.1e-32 144.1 202 36.1
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 2.1e-32 144.1 190 40.0
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.8e-32 143.7 189 38.6
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 3.7e-32 143.3 194 39.2
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 3.7e-32 143.3 191 38.2
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.7e-32 143.3 194 36.6
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 4.8e-32 142.9 196 39.3
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 4.8e-32 142.9 191 39.3
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 6.2e-32 142.5 190 41.1
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 8.2e-32 142.1 205 37.6
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 8.2e-32 142.1 192 38.5
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 8.2e-32 142.1 205 38.5
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 8.2e-32 142.1 190 36.8
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 8.2e-32 142.1 192 35.9
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 1.1e-31 141.7 190 38.4
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.1e-31 141.7 189 37.6
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.1e-31 141.7 202 37.6
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.4e-31 141.4 191 37.7
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 1.4e-31 141.4 191 38.7
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 1.8e-31 141.0 189 38.1
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 1.8e-31 141.0 190 39.5
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 1.8e-31 141.0 191 38.2
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.4e-31 140.6 191 37.7
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.4e-31 140.6 191 37.2
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 3.1e-31 140.2 190 38.4
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 4.0e-31 139.8 190 38.4
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.0e-31 139.8 191 36.6
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 4.0e-31 139.8 189 38.6
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 5.3e-31 139.4 182 39.0
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 6.9e-31 139.0 205 36.1
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 6.9e-31 139.0 189 37.0
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 6.9e-31 139.0 183 38.3
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 6.9e-31 139.0 187 39.6
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 6.9e-31 139.0 190 38.9
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 9.0e-31 138.7 216 35.6
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 9.0e-31 138.7 191 37.2
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.2e-30 138.3 191 36.6
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.2e-30 138.3 201 36.3
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.2e-30 138.3 199 37.2
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.5e-30 137.9 205 36.1
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 1.5e-30 137.9 192 38.5
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.5e-30 137.9 191 36.6
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 2.6e-30 137.1 215 37.2
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.6e-30 137.1 201 35.8
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 3.4e-30 136.7 191 39.8
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 4.5e-30 136.3 191 36.6
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 4.5e-30 136.3 191 36.6
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 4.5e-30 136.3 192 34.9
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 4.5e-30 136.3 192 34.9
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 5.8e-30 136.0 222 37.4
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 5.8e-30 136.0 189 39.2
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 7.6e-30 135.6 191 37.2
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.3e-29 134.8 191 36.6
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.2e-29 134.0 190 36.3
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.2e-29 134.0 190 36.3
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 4.9e-29 132.9 189 37.6
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 9.3e-28 128.6 205 35.6
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 2.1e-27 127.5 157 38.9
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 7.9e-27 125.6 205 36.6
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 1.8e-26 124.4 153 41.8
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 5.1e-26 122.9 185 36.2
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.5e-25 121.3 145 42.1
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 1.5e-25 121.3 229 32.8
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.9e-25 120.9 205 35.6
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.2e-24 117.5 159 37.7
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 2.8e-24 117.1 154 37.0
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 3.7e-24 116.7 195 34.9
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.1e-23 115.2 314 27.1
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 1.8e-23 114.4 153 39.9
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 8.5e-21 105.5 119 40.3
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 2.5e-20 104.0 126 41.3
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 1.6e-19 101.3 135 37.8
MCO08G354 Micromonas commoda HOM05D004698 ORTHO05D005699 1.6e-19 101.3 258 32.9
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 4.3e-17 93.2 115 39.1
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 4.3e-17 93.2 115 39.1
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 2.8e-16 90.5 109 39.4
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 8.2e-16 89.0 107 38.3
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 1.1e-15 88.6 102 40.2
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 1.1e-15 88.6 109 38.5
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.8e-15 87.8 112 35.7
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 4.2e-12 76.6 233 27.9
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 7.2e-12 75.9 105 36.2
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 6.3e-08 62.8 83 42.2
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 1.8e-07 61.2 90 36.7
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.2e-06 58.5 87 37.9


User provided reference genes

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