Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 3.8e-227 791.2 405 100.0
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 3.2e-101 372.9 379 50.9
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 4.2e-69 266.2 344 41.6
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 5.5e-69 265.8 320 42.5
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 1.2e-68 264.6 344 41.6
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 3.0e-67 260.0 341 41.3
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 5.2e-67 259.2 332 42.5
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 5.2e-67 259.2 341 41.6
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 8.8e-67 258.5 283 46.6
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 1.5e-66 257.7 344 42.7
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 2.0e-66 257.3 300 44.0
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 2.6e-66 256.9 318 42.5
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 3.4e-66 256.5 329 43.5
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 3.4e-66 256.5 283 44.9
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 4.4e-66 256.1 330 41.8
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 9.8e-66 255.0 346 41.3
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 1.7e-65 254.2 342 41.5
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 1.7e-65 254.2 342 41.5
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 2.2e-65 253.8 346 41.9
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 2.8e-65 253.4 318 41.8
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 2.8e-65 253.4 310 41.9
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 3.7e-65 253.1 283 45.6
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 3.7e-65 253.1 342 40.9
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 4.8e-65 252.7 377 39.3
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 4.8e-65 252.7 283 45.6
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 6.3e-65 252.3 342 40.9
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 6.3e-65 252.3 318 42.1
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 6.3e-65 252.3 318 42.1
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 6.3e-65 252.3 318 42.1
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 6.3e-65 252.3 291 45.0
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 6.3e-65 252.3 318 41.8
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 6.3e-65 252.3 297 43.4
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 6.3e-65 252.3 283 45.6
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 8.3e-65 251.9 283 45.6
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 8.3e-65 251.9 342 40.9
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 1.1e-64 251.5 342 41.2
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 1.1e-64 251.5 318 41.5
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 1.1e-64 251.5 318 41.8
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 1.1e-64 251.5 289 43.9
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.1e-64 251.5 311 41.5
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 1.4e-64 251.1 294 43.2
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.4e-64 251.1 294 43.2
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 2.4e-64 250.4 279 44.4
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.4e-64 250.4 294 42.9
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 2.4e-64 250.4 332 41.9
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 5.4e-64 249.2 279 45.2
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 5.4e-64 249.2 345 42.6
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 5.4e-64 249.2 345 41.7
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 9.1e-64 248.4 307 42.7
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 9.1e-64 248.4 311 43.4
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 9.1e-64 248.4 321 41.7
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 9.1e-64 248.4 394 38.3
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 1.6e-63 247.7 318 41.2
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.6e-63 247.7 354 39.5
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.0e-63 247.3 290 43.1
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 2.7e-63 246.9 304 42.4
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 2.7e-63 246.9 268 46.3
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 2.7e-63 246.9 304 42.4
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 3.5e-63 246.5 367 39.2
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 3.5e-63 246.5 344 41.0
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 4.5e-63 246.1 300 42.3
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 4.5e-63 246.1 300 42.3
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 4.5e-63 246.1 321 42.1
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.5e-63 246.1 297 44.4
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 4.5e-63 246.1 304 42.8
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 5.9e-63 245.7 279 44.8
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 7.7e-63 245.4 298 44.6
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 1.0e-62 245.0 315 42.9
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 1.0e-62 245.0 343 38.8
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 1.3e-62 244.6 283 44.5
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.7e-62 244.2 297 42.4
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 1.7e-62 244.2 343 37.3
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 1.7e-62 244.2 308 42.2
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 2.3e-62 243.8 393 38.4
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 2.3e-62 243.8 341 41.1
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 2.3e-62 243.8 317 42.0
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 2.3e-62 243.8 336 39.9
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.9e-62 243.4 383 38.6
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 5.0e-62 242.7 283 42.4
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 5.0e-62 242.7 281 44.1
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 8.6e-62 241.9 319 40.4
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 8.6e-62 241.9 297 41.4
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 8.6e-62 241.9 383 37.6
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 8.6e-62 241.9 330 40.0
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 8.6e-62 241.9 330 40.6
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 1.5e-61 241.1 330 39.7
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.9e-61 240.7 383 38.1
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.9e-61 240.7 304 42.1
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 2.5e-61 240.4 330 40.3
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 3.3e-61 240.0 324 41.4
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 4.2e-61 239.6 380 38.7
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 4.2e-61 239.6 391 37.3
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 5.5e-61 239.2 330 40.0
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 7.2e-61 238.8 380 38.7
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 1.6e-60 237.7 296 42.9
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 3.6e-60 236.5 341 37.8
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 8.0e-60 235.3 319 39.8
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.0e-59 235.0 283 42.8
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 1.4e-59 234.6 330 38.5
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 2.3e-59 233.8 293 42.3
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 2.3e-59 233.8 310 41.0
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 3.0e-59 233.4 383 36.6
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 6.8e-59 232.3 315 40.3
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 8.9e-59 231.9 330 38.5
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.0e-58 230.7 388 36.6
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 3.4e-58 229.9 379 36.4
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 4.4e-58 229.6 289 42.6
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 4.4e-58 229.6 289 42.6
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 7.5e-58 228.8 388 36.3
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 7.5e-58 228.8 330 40.0
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 7.5e-58 228.8 284 42.6
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 1.3e-57 228.0 390 36.9
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 2.2e-57 227.3 349 39.3
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 2.2e-57 227.3 330 37.9
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 3.7e-57 226.5 301 40.5
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 4.9e-57 226.1 345 39.4
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 1.4e-56 224.6 322 38.5
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.7e-54 217.6 280 41.4
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 5.0e-54 216.1 239 46.4
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 6.6e-54 215.7 244 46.3
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 1.1e-53 214.9 217 48.4
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 4.3e-53 213.0 283 40.6
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 5.6e-53 212.6 274 43.4
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.8e-52 210.3 265 42.6
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.8e-52 210.3 265 42.6
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 3.1e-51 206.8 234 44.4
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 8.3e-49 198.7 411 33.3
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 6.0e-47 192.6 308 35.1
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 5.0e-46 189.5 249 41.0
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 1.5e-45 188.0 184 47.8
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 4.3e-45 186.4 346 35.8
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 7.3e-45 185.7 336 36.6
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 9.5e-45 185.3 173 50.9
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 1.2e-44 184.9 386 33.4
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 8.0e-44 182.2 241 42.3
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 1.1e-43 181.8 303 36.3
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 9.8e-42 175.3 464 28.0
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 6.2e-28 129.4 141 46.1
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.2e-23 115.2 93 55.9
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.9e-21 107.8 82 62.2
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 3.2e-16 90.5 164 35.4
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 9.9e-10 68.9 76 46.1
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 1.3e-09 68.6 108 35.2
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 8.7e-06 55.8 54 40.7


User provided reference genes

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