Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 1.7e-34 148.7 68 100.0
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 1.1e-17 92.8 59 66.1
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 1.4e-17 92.4 63 63.5
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 1.8e-17 92.0 62 64.5
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 9.1e-17 89.7 62 64.5
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 2.7e-16 88.2 59 62.7
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 4.5e-16 87.4 59 62.7
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 4.5e-16 87.4 56 67.9
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 5.9e-16 87.0 59 62.7
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 7.7e-16 86.7 59 61.0
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 7.7e-16 86.7 59 61.0
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 7.7e-16 86.7 59 61.0
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 7.7e-16 86.7 59 62.7
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 1.0e-15 86.3 59 61.0
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 1.0e-15 86.3 59 61.0
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 1.0e-15 86.3 59 61.0
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 1.0e-15 86.3 59 61.0
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 1.3e-15 85.9 59 61.0
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 1.3e-15 85.9 59 61.0
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 1.3e-15 85.9 59 61.0
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 1.3e-15 85.9 59 61.0
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 1.3e-15 85.9 59 61.0
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 1.3e-15 85.9 59 61.0
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 59.3
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 1.3e-15 85.9 59 61.0
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 59.3
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 59.3
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 1.3e-15 85.9 59 61.0
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.7e-15 85.5 59 61.0
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.7e-15 85.5 59 61.0
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 1.7e-15 85.5 59 61.0
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.7e-15 85.5 59 61.0
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 1.7e-15 85.5 59 61.0
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 1.7e-15 85.5 59 61.0
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 2.2e-15 85.1 59 59.3
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.2e-15 85.1 59 59.3
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.2e-15 85.1 59 59.3
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 2.2e-15 85.1 59 59.3
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.9e-15 84.7 59 59.3
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 2.9e-15 84.7 59 59.3
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 2.9e-15 84.7 59 59.3
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 2.9e-15 84.7 59 59.3
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 2.9e-15 84.7 59 59.3
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 59.3
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 59.3
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 59.3
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 59.3
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 59.3
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 59.3
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 59.3
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 61.0
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 57.6
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 59.3
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 59.3
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 61.0
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 61.0
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 3.8e-15 84.3 59 59.3
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 3.8e-15 84.3 56 62.5
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 5.0e-15 84.0 59 59.3
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 5.0e-15 84.0 59 57.6
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 5.0e-15 84.0 59 57.6
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 5.0e-15 84.0 59 59.3
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 5.0e-15 84.0 59 57.6
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 5.0e-15 84.0 59 59.3
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 5.0e-15 84.0 59 59.3
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 5.0e-15 84.0 59 59.3
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 6.5e-15 83.6 59 57.6
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 6.5e-15 83.6 59 59.3
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 6.5e-15 83.6 59 59.3
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 6.5e-15 83.6 59 59.3
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 6.5e-15 83.6 59 57.6
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 6.5e-15 83.6 59 59.3
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 6.5e-15 83.6 59 59.3
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 8.5e-15 83.2 59 57.6
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 8.5e-15 83.2 59 57.6
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 8.5e-15 83.2 59 57.6
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 8.5e-15 83.2 59 57.6
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 8.5e-15 83.2 59 57.6
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 8.5e-15 83.2 59 57.6
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 8.5e-15 83.2 59 57.6
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 8.5e-15 83.2 59 57.6
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 8.5e-15 83.2 59 59.3
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 8.5e-15 83.2 59 59.3
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 8.5e-15 83.2 59 57.6
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 8.5e-15 83.2 59 59.3
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 8.5e-15 83.2 59 59.3
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 1.1e-14 82.8 59 59.3
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 1.1e-14 82.8 59 57.6
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 1.1e-14 82.8 59 57.6
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.1e-14 82.8 59 57.6
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.5e-14 82.4 59 57.6
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.5e-14 82.4 59 57.6
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.5e-14 82.4 59 57.6
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 1.5e-14 82.4 59 57.6
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 1.5e-14 82.4 59 55.9
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 1.5e-14 82.4 59 57.6
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 1.5e-14 82.4 59 57.6
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 1.9e-14 82.0 59 57.6
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 1.9e-14 82.0 59 57.6
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 1.9e-14 82.0 59 55.9
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.9e-14 82.0 59 55.9
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 2.5e-14 81.6 59 57.6
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 2.5e-14 81.6 59 55.9
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 2.5e-14 81.6 59 55.9
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 2.5e-14 81.6 59 55.9
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 2.5e-14 81.6 59 55.9
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 3.2e-14 81.3 59 55.9
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 3.2e-14 81.3 58 58.6
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 5.5e-14 80.5 59 55.9
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 7.2e-14 80.1 59 54.2
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.2e-13 79.3 59 55.9
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 2.1e-13 78.6 51 60.8
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 2.7e-13 78.2 58 56.9
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 3.6e-13 77.8 59 55.9
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 3.6e-13 77.8 56 58.9
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 4.7e-13 77.4 59 57.6
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 4.7e-13 77.4 63 54.0
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 6.8e-12 73.6 59 50.8
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 8.8e-12 73.2 51 58.8
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 2.0e-11 72.0 52 57.7
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 7.5e-11 70.1 51 56.9
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 8.3e-10 66.6 51 56.9
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 2.0e-08 62.0 38 65.8
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 6.6e-07 57.0 42 54.8


User provided reference genes

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