Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00006625 Prasinoderma coloniale HOM05D007525 ORTHO05D003398 0.0e+00 1229.5 676 100.0
Cre06.g292400 Chlamydomonas reinhardtii HOM05D007525 ORTHO05D003398 1.8e-32 145.2 200 42.0
MCO05G605 Micromonas commoda HOM05D007525 ORTHO05D003398 5.7e-26 123.6 135 47.4
CBR_g31994 Chara braunii HOM05D007525 ORTHO05D003398 1.4e-24 119.0 134 45.5
TPR.G28291 Trifolium pratense HOM05D007525 ORTHO05D003398 1.2e-20 105.9 142 35.9
Mapoly0153s0018 Marchantia polymorpha HOM05D007525 ORTHO05D003398 2.1e-20 105.1 134 39.6
Cpa.g.sc184.25 Carica papaya HOM05D007525 ORTHO05D003398 2.7e-20 104.8 144 38.2
PGR042G3120 Punica granatum HOM05D007525 ORTHO05D003398 2.7e-20 104.8 147 37.4
Manes.05G030450 Manihot esculenta HOM05D007525 ORTHO05D003398 3.6e-20 104.4 139 37.4
Nn1g01647 Nelumbo nucifera HOM05D007525 ORTHO05D003398 3.6e-20 104.4 135 38.5
Migut.N01460 Erythranthe guttata HOM05D007525 ORTHO05D003398 4.6e-20 104.0 138 37.0
Medtr8g028545 Medicago truncatula HOM05D007525 ORTHO05D003398 4.6e-20 104.0 142 35.2
Ca_03496_v3 Cicer arietinum L. HOM05D007525 ORTHO05D003398 6.1e-20 103.6 146 34.2
Gohir.D07G146200 Gossypium hirsutum HOM05D007525 ORTHO05D003398 1.0e-19 102.8 135 38.5
Gorai.001G158400 Gossypium raimondii HOM05D007525 ORTHO05D003398 1.0e-19 102.8 135 38.5
Aqoxy7G00302 Aquilegia oxysepala HOM05D007525 ORTHO05D003398 1.4e-19 102.4 132 37.9
Lj7A509T109 Lonicera japonica HOM05D007525 ORTHO05D003398 1.8e-19 102.1 135 37.0
Thecc.01G354100 Theobroma cacao HOM05D007525 ORTHO05D003398 1.8e-19 102.1 135 38.5
Psat4g157560 Pisum sativum HOM05D007525 ORTHO05D003398 2.3e-19 101.7 140 35.7
Zm00001eb073280 Zea mays HOM05D007525 ORTHO05D003398 3.0e-19 101.3 135 38.5
Duzib133G0712 Durio zibethinus HOM05D007525 ORTHO05D003398 3.9e-19 100.9 135 37.8
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.9e-19 100.9 136 36.8
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.9e-19 100.9 136 36.8
FvH4_7g15085 Fragaria vesca HOM05D007525 ORTHO05D003398 5.1e-19 100.5 136 36.8
Prupe.2G175600 Prunus persica HOM05D007525 ORTHO05D003398 5.1e-19 100.5 136 36.0
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.7e-19 100.1 136 36.8
GSVIVG01026980001 Vitis vinifera HOM05D007525 ORTHO05D003398 6.7e-19 100.1 136 36.8
TAR636G1192 Trochodendron aralioides HOM05D007525 ORTHO05D003398 8.8e-19 99.8 132 36.4
vmacro13241 Vaccinium macrocarpon HOM05D007525 ORTHO05D003398 8.8e-19 99.8 135 36.3
Ciclev10022006m.g Citrus clementina HOM05D007525 ORTHO05D003398 1.1e-18 99.4 143 35.0
MD01G1069500 Malus domestica HOM05D007525 ORTHO05D003398 1.1e-18 99.4 142 35.2
SalBow5G0215 Salvia bowleyana HOM05D007525 ORTHO05D003398 1.1e-18 99.4 136 36.8
Actinidia10060 Actinidia chinensis HOM05D007525 ORTHO05D003398 1.5e-18 99.0 136 36.8
Cfa003884 Carpinus fangiana HOM05D007525 ORTHO05D003398 1.5e-18 99.0 133 36.8
PSO478G5123 Papaver somniferum HOM05D007525 ORTHO05D003398 1.5e-18 99.0 141 37.6
EL10Ac1g00368 Beta vulgaris HOM05D007525 ORTHO05D003398 2.0e-18 98.6 133 36.1
CANSAT56G0175 Cannabis sativa HOM05D007525 ORTHO05D003398 2.0e-18 98.6 133 36.8
Lalb_Chr10g0096641 Lupinus albus HOM05D007525 ORTHO05D003398 2.0e-18 98.6 151 33.8
unitig_22.g6725 Utricularia gibba HOM05D007525 ORTHO05D003398 2.0e-18 98.6 135 35.6
VMungo0331G0679 Vigna mungo HOM05D007525 ORTHO05D003398 2.0e-18 98.6 140 34.3
Potri.002G162800 Populus trichocarpa HOM05D007525 ORTHO05D003398 2.6e-18 98.2 135 36.3
ATR0661G217 Amborella trichopoda HOM05D007525 ORTHO05D003398 3.3e-18 97.8 135 36.3
Eucgr.E00102 Eucalyptus grandis HOM05D007525 ORTHO05D003398 3.3e-18 97.8 147 34.7
Lj3g0004891 Lotus japonicus HOM05D007525 ORTHO05D003398 3.3e-18 97.8 135 34.8
RcHm_v2.0_Chr1g0357281 Rosa chinensis HOM05D007525 ORTHO05D003398 3.3e-18 97.8 136 36.0
Sabra02G0147700 Salix brachista HOM05D007525 ORTHO05D003398 3.3e-18 97.8 136 36.0
Atru.chr5.548 Acer truncatum HOM05D007525 ORTHO05D003398 4.4e-18 97.4 136 35.3
MSTRG.4841 Avicennia marina HOM05D007525 ORTHO05D003398 5.7e-18 97.1 135 36.3
CSS0031135 Camellia sinensis var. sinensis HOM05D007525 ORTHO05D003398 5.7e-18 97.1 146 34.9
MELO3C021185.2 Cucumis melo HOM05D007525 ORTHO05D003398 5.7e-18 97.1 135 34.8
Oeu036594.1 Olea europaea HOM05D007525 ORTHO05D003398 1.7e-17 95.5 138 34.1
CDE12G0297 Ceratophyllum demersum HOM05D007525 ORTHO05D003398 2.2e-17 95.1 134 34.3
AUR62022606 Chenopodium quinoa HOM05D007525 ORTHO05D003398 2.8e-17 94.7 135 33.3
HanXRQChr03g0093451 Helianthus annuus HOM05D007525 ORTHO05D003398 2.8e-17 94.7 135 35.6
Gohir.A07G140800 Gossypium hirsutum HOM05D007525 ORTHO05D003398 3.7e-17 94.4 135 36.3
SMO358G0422 Selaginella moellendorffii HOM05D007525 ORTHO05D003398 3.7e-17 94.4 136 39.0
CsaV3_6G000860 Cucumis sativus L. HOM05D007525 ORTHO05D003398 6.3e-17 93.6 135 34.1
Carub.0004s2880 Capsella rubella HOM05D007525 ORTHO05D003398 1.1e-16 92.8 133 36.1
Rhsim07G0011500 Rhododendron simsii HOM05D001943 ORTHO05D001969 1.1e-16 92.8 122 36.9
TWI59G1390 Tripterygium wilfordii HOM05D007525 ORTHO05D003398 1.1e-16 92.8 139 33.8
AagrBONN_evm.TU.Sc2ySwM_228.1193 Anthoceros agrestis HOM05D007525 ORTHO05D003398 1.4e-16 92.4 103 45.6
Ah.05g180250 Amaranthus hybridus HOM05D007525 ORTHO05D003398 1.8e-16 92.0 136 33.1
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 1.8e-16 92.0 132 37.1
SGA_v2.0_scaffold43G16396 Striga asiatica HOM05D007525 ORTHO05D003398 1.8e-16 92.0 204 29.9
Thhalv10001607m.g Eutrema salsugineum HOM05D007525 ORTHO05D003398 2.4e-16 91.7 133 35.3
AL4G45330 Arabidopsis lyrata HOM05D007525 ORTHO05D003398 3.1e-16 91.3 133 35.3
AT2G46100 Arabidopsis thaliana HOM05D007525 ORTHO05D003398 3.1e-16 91.3 133 34.6
CAN.G78.117 Capsicum annuum HOM05D007525 ORTHO05D003398 3.1e-16 91.3 133 33.1
Peaxi162Scf00020g00126 Petunia axillaris HOM05D007525 ORTHO05D003398 3.1e-16 91.3 143 32.9
PGSC0003DMG400000187 Solanum tuberosum HOM05D007525 ORTHO05D003398 3.1e-16 91.3 133 33.8
HPP92_021017 Vanilla planifolia HOM05D007525 ORTHO05D003398 3.1e-16 91.3 136 33.1
Sopen01g038780 Solanum pennellii HOM05D007525 ORTHO05D003398 4.1e-16 90.9 133 33.8
Solyc01g095000.3 Solanum lycopersicum HOM05D007525 ORTHO05D003398 5.3e-16 90.5 133 33.1
Cc00_g17820 Coffea canephora HOM05D007525 ORTHO05D003398 6.9e-16 90.1 145 31.0
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.9e-16 90.1 108 39.8
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 1.2e-15 89.4 196 27.6
Nitab4.5_0000915g0170 Nicotiana tabacum HOM05D007525 ORTHO05D003398 1.2e-15 89.4 133 32.3
A05p06060 Brassica napus HOM05D007525 ORTHO05D003398 1.5e-15 89.0 133 35.3
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 2.0e-15 88.6 133 34.6
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 2.0e-15 88.6 133 34.6
CiPaw.01G065400 Carya illinoinensis HOM05D007525 ORTHO05D003398 2.0e-15 88.6 133 33.8
COL.COLO4_12762 Corchorus olitorius HOM05D007525 ORTHO05D003398 2.0e-15 88.6 111 36.9
Os04g0578200 Oryza sativa ssp. japonica HOM05D007525 ORTHO05D003398 2.6e-15 88.2 108 38.0
ECA240G1228 Erigeron canadensis HOM05D007525 ORTHO05D003398 3.4e-15 87.8 134 33.6
Nitab4.5_0010703g0010 Nicotiana tabacum HOM05D007525 ORTHO05D003398 3.4e-15 87.8 133 31.6
Mapoly0006s0024 Marchantia polymorpha HOM05D006905 ORTHO05D003398 4.5e-15 87.4 151 31.8
ClCG06G003450 Citrullus lanatus HOM05D007525 ORTHO05D003398 5.9e-15 87.0 141 31.9
Phvul.010G105000 Phaseolus vulgaris HOM05D007525 ORTHO05D003398 5.9e-15 87.0 108 37.0
Cre10.g464250 Chlamydomonas reinhardtii HOM05D006905 ORTHO05D003398 7.7e-15 86.7 136 35.3
Mapoly0178s0027 Marchantia polymorpha HOM05D006905 ORTHO05D003398 7.7e-15 86.7 136 33.1
Pp3c24_12540 Physcomitrium patens HOM05D006905 ORTHO05D003398 1.0e-14 86.3 136 33.1
BcaC05g30566 Brassica carinata HOM05D006905 ORTHO05D003398 2.2e-14 85.1 124 36.3
Mapoly0016s0115 Marchantia polymorpha HOM05D006905 ORTHO05D003398 2.2e-14 85.1 132 33.3
Pp3c4_17920 Physcomitrium patens HOM05D007525 ORTHO05D003398 2.9e-14 84.7 138 32.6
THA.LOC104802823 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 6.5e-14 83.6 128 35.2
DCAR_025212 Daucus carota HOM05D001555 ORTHO05D001616 8.5e-14 83.2 110 37.3
SEGI_10814 Sequoiadendron giganteum HOM05D006905 ORTHO05D003398 1.4e-13 82.4 133 30.8
QL04p055069 Quercus lobata HOM05D007525 ORTHO05D003398 1.9e-13 82.0 110 34.5
HanXRQChr12g0384101 Helianthus annuus HOM05D006905 ORTHO05D003398 2.5e-13 81.6 136 30.9
Mapoly0059s0020 Marchantia polymorpha HOM05D006905 ORTHO05D003398 2.5e-13 81.6 132 31.8
EL10Ac4g09180 Beta vulgaris HOM05D006905 ORTHO05D003398 4.2e-13 80.9 124 35.5
Thhalv10021425m.g Eutrema salsugineum HOM05D006905 ORTHO05D003398 4.2e-13 80.9 126 32.5
FAN05G2111 Fragaria x ananassa HOM05D006905 ORTHO05D003398 9.4e-13 79.7 132 31.1
FAN14G2439 Fragaria x ananassa HOM05D006905 ORTHO05D003398 9.4e-13 79.7 133 30.8
Sp4g28160 Schrenkiella parvula HOM05D007525 ORTHO05D003398 9.4e-13 79.7 133 33.1
FvH4_6g03440 Fragaria vesca HOM05D006905 ORTHO05D003398 1.6e-12 79.0 133 30.1
VMungo0720G0828 Vigna mungo HOM05D006905 ORTHO05D003398 1.6e-12 79.0 133 33.8
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 2.1e-12 78.6 107 35.5
THA.LOC104817313 Tarenaya hassleriana HOM05D007525 ORTHO05D003398 2.1e-12 78.6 164 29.9
Atru.chr2.731 Acer truncatum HOM05D006905 ORTHO05D003398 2.7e-12 78.2 137 29.2
Migut.N01907 Erythranthe guttata HOM05D006905 ORTHO05D003398 2.7e-12 78.2 133 28.6
FAN09G1595 Fragaria x ananassa HOM05D006905 ORTHO05D003398 2.7e-12 78.2 133 30.1
Sc20g0000270 Simmondsia chinensis HOM05D006905 ORTHO05D003398 2.7e-12 78.2 144 28.5
Gorai.004G263200 Gossypium raimondii HOM05D006905 ORTHO05D003398 3.6e-12 77.8 136 29.4
RcHm_v2.0_Chr3g0451941 Rosa chinensis HOM05D006905 ORTHO05D003398 3.6e-12 77.8 133 30.1
CARHR079160 Cardamine hirsuta HOM05D006905 ORTHO05D003398 6.1e-12 77.0 128 32.8
unitig_8.g4913 Utricularia gibba HOM05D006905 ORTHO05D003398 6.1e-12 77.0 139 28.1
FAN02G2898 Fragaria x ananassa HOM05D006905 ORTHO05D003398 7.9e-12 76.6 133 29.3
Gohir.D08G246700 Gossypium hirsutum HOM05D006905 ORTHO05D003398 7.9e-12 76.6 136 29.4
MBI04_g26962_MAGBIO Magnolia biondii HOM05D007525 ORTHO05D003398 7.9e-12 76.6 111 35.1
THA.LOC104802824 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 7.9e-12 76.6 138 33.3
ATR0737G167 Amborella trichopoda HOM05D006905 ORTHO05D003398 1.0e-11 76.3 129 31.0
ECA246G1419 Erigeron canadensis HOM05D006905 ORTHO05D003398 1.0e-11 76.3 128 30.5
MBI04_g20814_MAGBIO Magnolia biondii HOM05D006905 ORTHO05D003398 1.4e-11 75.9 131 29.8
Phvul.007G186100 Phaseolus vulgaris HOM05D006905 ORTHO05D003398 2.3e-11 75.1 133 32.3
SalBow8G0693 Salvia bowleyana HOM05D006905 ORTHO05D003398 2.3e-11 75.1 136 28.7
SGA_v2.0_scaffold5G02928 Striga asiatica HOM05D006905 ORTHO05D003398 2.3e-11 75.1 135 30.4
Atru.chr2.743 Acer truncatum HOM05D006905 ORTHO05D003398 3.0e-11 74.7 137 28.5
Aqoxy5G00478 Aquilegia oxysepala HOM05D006905 ORTHO05D003398 3.0e-11 74.7 127 29.9
Lsat_1_v5_gn_3_138380 Lactuca sativa HOM05D007525 ORTHO05D003398 3.0e-11 74.7 100 35.0
Duzib128G0775 Durio zibethinus HOM05D006905 ORTHO05D003398 3.9e-11 74.3 136 30.1
TAR636G1711 Trochodendron aralioides HOM05D006905 ORTHO05D003398 5.2e-11 73.9 139 26.6
Glyma.10G160600 Glycine max HOM05D006905 ORTHO05D003398 6.7e-11 73.6 135 32.6
COL.COLO4_38037 Corchorus olitorius HOM05D006905 ORTHO05D003398 1.5e-10 72.4 125 32.8
Manes.09G156000 Manihot esculenta HOM05D006905 ORTHO05D003398 1.5e-10 72.4 129 31.0
Sc23g0002640 Simmondsia chinensis HOM05D007525 ORTHO05D003398 1.5e-10 72.4 95 35.8
Lalb_Chr06g0167991 Lupinus albus HOM05D006905 ORTHO05D003398 2.0e-10 72.0 122 32.0
Nn4g26306 Nelumbo nucifera HOM05D006905 ORTHO05D003398 2.0e-10 72.0 136 28.7
SMO146G0019 Selaginella moellendorffii HOM05D006905 ORTHO05D003398 5.7e-10 70.5 118 31.4
Haze_15550 Corylus avellana HOM05D007525 ORTHO05D003398 7.4e-10 70.1 170 30.0
TPR.G11158 Trifolium pratense HOM05D006905 ORTHO05D003398 9.7e-10 69.7 132 29.5
Thecc.05G193600 Theobroma cacao HOM05D006905 ORTHO05D003398 1.7e-09 68.9 136 27.9
arahy.Tifrunner.gnm1.ann1.PI1FXK Arachis hypogaea HOM05D006905 ORTHO05D003398 2.8e-09 68.2 122 31.1
AagrBONN_evm.TU.Sc2ySwM_117.1949 Anthoceros agrestis HOM05D006905 ORTHO05D003398 6.3e-09 67.0 128 32.8
Glyma.16G031100 Glycine max HOM05D007525 ORTHO05D003398 1.1e-08 66.2 110 30.9
MCO09G649 Micromonas commoda HOM05D006905 ORTHO05D003398 7.0e-08 63.5 134 31.3
Hund22112 Selenicereus undatus HOM05D006905 ORTHO05D003398 9.1e-08 63.2 134 31.3
AUR62000979 Chenopodium quinoa HOM05D006905 ORTHO05D003398 1.2e-07 62.8 107 33.6
MCO06G228 Micromonas commoda HOM05D006905 ORTHO05D003398 4.5e-07 60.8 137 28.5


User provided reference genes

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