Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 1.2e-138 496.5 254 100.0
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 2.5e-51 206.5 249 49.0
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 8.9e-49 198.0 248 46.0
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 7.0e-46 188.3 249 46.6
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 7.0e-46 188.3 246 46.3
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 9.2e-46 188.0 249 46.2
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 9.2e-46 188.0 249 46.2
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 1.2e-45 187.6 249 46.2
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 2.0e-45 186.8 249 45.8
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 2.0e-45 186.8 249 45.8
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 2.0e-45 186.8 249 46.2
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 2.0e-45 186.8 249 46.2
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 2.7e-45 186.4 249 45.8
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 3.5e-45 186.0 249 45.4
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 4.6e-45 185.7 250 46.0
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 6.0e-45 185.3 249 45.8
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 6.0e-45 185.3 251 46.6
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 7.8e-45 184.9 249 45.0
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 1.0e-44 184.5 249 45.0
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.0e-44 184.5 249 45.8
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.3e-44 184.1 249 45.0
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.3e-44 184.1 249 45.0
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 1.7e-44 183.7 250 45.6
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 1.7e-44 183.7 249 45.0
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 1.7e-44 183.7 249 45.4
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 2.3e-44 183.3 249 45.4
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 2.3e-44 183.3 249 45.4
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 2.3e-44 183.3 249 45.4
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.3e-44 183.3 249 45.0
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 2.3e-44 183.3 249 45.4
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 2.3e-44 183.3 249 45.4
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 3.0e-44 183.0 249 45.0
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 3.0e-44 183.0 249 45.0
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 5.0e-44 182.2 249 45.0
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 5.0e-44 182.2 254 44.1
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 5.0e-44 182.2 248 44.0
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 5.0e-44 182.2 249 45.4
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 6.6e-44 181.8 255 47.5
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 6.6e-44 181.8 249 44.6
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 6.6e-44 181.8 249 43.8
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 6.6e-44 181.8 249 44.2
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 8.6e-44 181.4 211 49.3
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 8.6e-44 181.4 249 44.2
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 8.6e-44 181.4 249 44.6
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 8.6e-44 181.4 249 45.4
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 8.6e-44 181.4 249 45.0
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 8.6e-44 181.4 249 45.4
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 1.1e-43 181.0 250 45.6
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.1e-43 181.0 246 43.9
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.5e-43 180.6 249 44.2
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 1.5e-43 180.6 249 45.0
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.5e-43 180.6 249 45.4
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.9e-43 180.3 249 45.4
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 2.5e-43 179.9 249 44.2
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 2.5e-43 179.9 222 48.6
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 2.5e-43 179.9 249 45.0
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 4.3e-43 179.1 249 44.6
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 4.3e-43 179.1 249 44.6
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 5.6e-43 178.7 246 43.5
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 5.6e-43 178.7 242 45.9
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 5.6e-43 178.7 249 44.6
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 7.3e-43 178.3 249 44.2
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 9.5e-43 177.9 249 45.0
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 9.5e-43 177.9 246 44.7
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 9.5e-43 177.9 249 43.8
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.2e-42 177.6 211 47.4
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 1.2e-42 177.6 250 44.8
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 1.2e-42 177.6 248 44.4
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.2e-42 177.6 249 44.2
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 1.2e-42 177.6 249 45.0
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 1.6e-42 177.2 249 44.2
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.6e-42 177.2 249 44.2
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.6e-42 177.2 249 43.4
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.6e-42 177.2 264 42.4
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 2.1e-42 176.8 249 43.8
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 2.1e-42 176.8 251 44.6
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 3.6e-42 176.0 249 43.8
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 3.6e-42 176.0 249 43.8
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 4.7e-42 175.6 249 44.2
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 6.2e-42 175.3 249 43.0
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 8.1e-42 174.9 249 43.0
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 8.1e-42 174.9 249 43.0
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.1e-41 174.5 254 43.3
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 1.1e-41 174.5 249 43.0
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 1.1e-41 174.5 249 43.0
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.1e-41 174.5 257 43.2
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.4e-41 174.1 249 42.6
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.4e-41 174.1 249 43.0
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 1.4e-41 174.1 249 43.4
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 1.8e-41 173.7 249 43.0
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.8e-41 173.7 249 43.0
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.8e-41 173.7 249 43.0
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 4.0e-41 172.6 249 43.8
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 5.2e-41 172.2 246 43.9
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 6.8e-41 171.8 249 41.8
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 1.5e-40 170.6 249 42.6
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 1.5e-40 170.6 249 42.6
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 4.4e-40 169.1 277 41.5
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 3.7e-39 166.0 236 43.2
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 6.4e-39 165.2 249 44.2
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 2.7e-37 159.8 221 45.2
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.0e-36 157.9 245 41.2
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 3.9e-36 156.0 292 37.7
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 1.9e-35 153.7 190 48.4
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 4.3e-35 152.5 180 49.4
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 5.6e-35 152.1 296 36.5
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 9.5e-35 151.4 249 40.2
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 9.5e-35 151.4 199 44.2
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.2e-34 151.0 190 46.8
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 1.6e-34 150.6 201 42.8
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 4.0e-33 146.0 151 51.7
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 4.0e-33 146.0 248 36.7
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.6e-32 143.3 199 44.7
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 2.2e-31 140.2 254 38.6
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.4e-30 137.5 190 44.7
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 5.4e-30 135.6 179 41.9
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 7.8e-29 131.7 160 45.6
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 7.6e-24 115.2 256 31.6
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 1.3e-15 87.8 196 35.7
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.2e-14 82.8 99 45.5
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 5.6e-11 72.4 109 44.0
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 4.8e-10 69.3 220 31.4
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.4e-09 67.0 124 41.1
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 9.0e-09 65.1 144 38.2
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 4.5e-08 62.8 93 45.2
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 7.6e-08 62.0 44 59.1
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 5.5e-06 55.8 153 34.6


User provided reference genes

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