Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00005812 Prasinoderma coloniale HOM05D007268 ORTHO05D009152 2.4e-54 215.3 113 100.0
Pp3c2_29020 Physcomitrium patens HOM05D007268 ORTHO05D009152 3.9e-12 75.1 106 41.5
MBI02_g20985_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 8.6e-12 73.9 91 48.4
PGR031G1097 Punica granatum HOM05D007268 ORTHO05D009152 1.5e-11 73.2 113 46.0
Eucgr.E02425 Eucalyptus grandis HOM05D007268 ORTHO05D009152 1.9e-11 72.8 111 42.3
Zm00001eb224700 Zea mays HOM05D007268 ORTHO05D009152 2.5e-11 72.4 91 46.2
BraA03t14206Z Brassica rapa HOM05D007268 ORTHO05D009152 3.3e-11 72.0 97 44.3
RcHm_v2.0_Chr5g0014441 Rosa chinensis HOM05D007268 ORTHO05D009152 3.3e-11 72.0 99 43.4
Carub.0007s2291 Capsella rubella HOM05D007268 ORTHO05D009152 4.3e-11 71.6 89 47.2
A03p51230 Brassica napus HOM05D007268 ORTHO05D009152 5.6e-11 71.2 93 45.2
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 5.6e-11 71.2 90 44.4
Sp7g15690 Schrenkiella parvula HOM05D007268 ORTHO05D009152 7.3e-11 70.9 107 43.9
Aqoxy4G02868 Aquilegia oxysepala HOM05D007268 ORTHO05D009152 9.5e-11 70.5 90 45.6
BcaC06g30594 Brassica carinata HOM05D007268 ORTHO05D009152 9.5e-11 70.5 112 42.9
BcaNung00009 Brassica carinata HOM05D007268 ORTHO05D009152 9.5e-11 70.5 112 42.9
BcaC06g30591 Brassica carinata HOM05D007268 ORTHO05D009152 1.2e-10 70.1 107 43.0
AUR62006739 Chenopodium quinoa HOM05D007268 ORTHO05D009152 1.2e-10 70.1 92 43.5
SMO358G0115 Selaginella moellendorffii HOM05D007268 ORTHO05D009152 1.2e-10 70.1 100 46.0
CAN.G42.16 Capsicum annuum HOM05D007268 ORTHO05D009152 1.6e-10 69.7 91 44.0
FAN25G0109 Fragaria x ananassa HOM05D007268 ORTHO05D009152 1.6e-10 69.7 90 44.4
Zm00001eb273860 Zea mays HOM05D007268 ORTHO05D009152 1.6e-10 69.7 91 44.0
CARHR225150 Cardamine hirsuta HOM05D007268 ORTHO05D009152 2.1e-10 69.3 111 41.4
Lsat_1_v5_gn_7_27661 Lactuca sativa HOM05D007268 ORTHO05D009152 2.1e-10 69.3 99 40.4
Sabra15G0149200 Salix brachista HOM05D007268 ORTHO05D009152 2.1e-10 69.3 95 44.2
Sed0026056 Sechium edule HOM05D007268 ORTHO05D009152 2.1e-10 69.3 89 43.8
BcaC09g51527 Brassica carinata HOM05D007268 ORTHO05D009152 2.8e-10 68.9 112 40.2
A01p10290 Brassica napus HOM05D007268 ORTHO05D009152 2.8e-10 68.9 111 40.5
BraA01t00976Z Brassica rapa HOM05D007268 ORTHO05D009152 2.8e-10 68.9 111 40.5
Manes.17G072200 Manihot esculenta HOM05D007268 ORTHO05D009152 2.8e-10 68.9 92 43.5
Nn3g20236 Nelumbo nucifera HOM05D007268 ORTHO05D009152 2.8e-10 68.9 91 44.0
Hund21552 Selenicereus undatus HOM05D007268 ORTHO05D009152 2.8e-10 68.9 92 43.5
Lalb_Chr18g0055321 Lupinus albus HOM05D007268 ORTHO05D009152 3.6e-10 68.6 89 44.9
Atru.chr4.1816 Acer truncatum HOM05D007268 ORTHO05D009152 4.7e-10 68.2 100 40.0
Aa31LG6G1080 Aethionema arabicum HOM05D007268 ORTHO05D009152 4.7e-10 68.2 113 41.6
C01p12240 Brassica napus HOM05D007268 ORTHO05D009152 4.7e-10 68.2 112 40.2
BolC1t01200H Brassica oleracea HOM05D007268 ORTHO05D009152 4.7e-10 68.2 112 40.2
Cfa000925 Carpinus fangiana HOM05D007268 ORTHO05D009152 4.7e-10 68.2 89 44.9
SEGI_36221 Sequoiadendron giganteum HOM05D007268 ORTHO05D009152 4.7e-10 68.2 99 40.4
Solyc08g048540.2 Solanum lycopersicum HOM05D007268 ORTHO05D009152 4.7e-10 68.2 91 42.9
AL7G36000 Arabidopsis lyrata HOM05D007268 ORTHO05D009152 6.2e-10 67.8 112 41.1
ClCG03G006700 Citrullus lanatus HOM05D007268 ORTHO05D009152 6.2e-10 67.8 89 43.8
Ciclev10017240m.g Citrus clementina HOM05D007268 ORTHO05D009152 6.2e-10 67.8 100 40.0
Psat1g188600 Pisum sativum HOM05D007268 ORTHO05D009152 6.2e-10 67.8 102 40.2
Atru.chr10.1171 Acer truncatum HOM05D007268 ORTHO05D009152 8.1e-10 67.4 100 39.0
BcaNung02699 Brassica carinata HOM05D007268 ORTHO05D009152 8.1e-10 67.4 92 43.5
C07p49660 Brassica napus HOM05D007268 ORTHO05D009152 8.1e-10 67.4 92 43.5
BolC7t45467H Brassica oleracea HOM05D007268 ORTHO05D009152 8.1e-10 67.4 92 43.5
Duzib235G0597 Durio zibethinus HOM05D007268 ORTHO05D009152 8.1e-10 67.4 89 42.7
Thhalv10026609m.g Eutrema salsugineum HOM05D007268 ORTHO05D009152 8.1e-10 67.4 111 41.4
Sopen08g010950 Solanum pennellii HOM05D007268 ORTHO05D009152 8.1e-10 67.4 90 43.3
ATR0618G449 Amborella trichopoda HOM05D007268 ORTHO05D009152 1.1e-09 67.0 87 43.7
Glyma.13G219500 Glycine max HOM05D007268 ORTHO05D009152 1.1e-09 67.0 99 40.4
Ca_00530_v3 Cicer arietinum L. HOM05D007268 ORTHO05D009152 1.4e-09 66.6 89 42.7
Gohir.A10G042300 Gossypium hirsutum HOM05D007268 ORTHO05D009152 1.4e-09 66.6 89 43.8
PSO541G1787 Papaver somniferum HOM05D007268 ORTHO05D009152 1.4e-09 66.6 90 45.6
QL05p055849 Quercus lobata HOM05D007268 ORTHO05D009152 1.4e-09 66.6 89 44.9
THA.LOC104798395 Tarenaya hassleriana HOM05D007268 ORTHO05D009152 1.4e-09 66.6 106 39.6
CsaV3_1G004630 Cucumis sativus L. HOM05D007268 ORTHO05D009152 1.8e-09 66.2 89 42.7
Mapoly0012s0147 Marchantia polymorpha HOM05D007268 ORTHO05D009152 1.8e-09 66.2 123 37.4
Medtr2g019100 Medicago truncatula HOM05D007268 ORTHO05D009152 1.8e-09 66.2 100 40.0
PGSC0003DMG400029871 Solanum tuberosum HOM05D007268 ORTHO05D009152 2.3e-09 65.9 91 42.9
TWI53G0467 Tripterygium wilfordii HOM05D007268 ORTHO05D009152 2.3e-09 65.9 91 41.8
Duzib160G0929 Durio zibethinus HOM05D007268 ORTHO05D009152 3.1e-09 65.5 89 40.4
Gorai.011G045800 Gossypium raimondii HOM05D007268 ORTHO05D009152 3.1e-09 65.5 84 46.4
TPR.G26254 Trifolium pratense HOM05D007268 ORTHO05D009152 3.1e-09 65.5 100 40.0
Sc24g0001710 Simmondsia chinensis HOM05D007268 ORTHO05D009152 4.0e-09 65.1 90 44.4
Phvul.006G166200 Phaseolus vulgaris HOM05D007268 ORTHO05D009152 5.2e-09 64.7 96 39.6
Actinidia32339 Actinidia chinensis HOM05D007268 ORTHO05D009152 6.8e-09 64.3 93 41.9
AT4G18372 Arabidopsis thaliana HOM05D007268 ORTHO05D009152 6.8e-09 64.3 112 39.3
CSS0021934 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 6.8e-09 64.3 96 41.7
CAN.G500.67 Capsicum annuum HOM05D007268 ORTHO05D009152 6.8e-09 64.3 89 42.7
Potri.015G138100 Populus trichocarpa HOM05D007268 ORTHO05D009152 6.8e-09 64.3 84 44.0
Thecc.06G148000 Theobroma cacao HOM05D007268 ORTHO05D009152 6.8e-09 64.3 89 41.6
Gohir.D10G043200 Gossypium hirsutum HOM05D007268 ORTHO05D009152 8.9e-09 63.9 83 45.8
Ah.04g158630 Amaranthus hybridus HOM05D007268 ORTHO05D009152 1.2e-08 63.5 90 41.1
CSS0030281 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 1.5e-08 63.2 96 40.6
DCAR_003898 Daucus carota HOM05D007268 ORTHO05D009152 2.0e-08 62.8 86 43.0
FAN16G0810 Fragaria x ananassa HOM05D007268 ORTHO05D009152 2.0e-08 62.8 77 46.8
EL10Ac4g09469 Beta vulgaris HOM05D007268 ORTHO05D009152 2.6e-08 62.4 74 44.6
ECA236G4633 Erigeron canadensis HOM05D007268 ORTHO05D009152 2.6e-08 62.4 99 37.4
GSVIVG01035542001 Vitis vinifera HOM05D007268 ORTHO05D009152 2.6e-08 62.4 74 45.9
CANSAT21G2169 Cannabis sativa HOM05D007268 ORTHO05D009152 3.4e-08 62.0 90 40.0
MD05G1281500 Malus domestica HOM05D007268 ORTHO05D009152 4.4e-08 61.6 110 40.9
CiPaw.10G090400 Carya illinoinensis HOM05D007268 ORTHO05D009152 5.8e-08 61.2 89 40.4
MSTRG.7499 Avicennia marina HOM05D007268 ORTHO05D009152 7.5e-08 60.8 105 36.2
CiPaw.09G121900 Carya illinoinensis HOM05D007268 ORTHO05D009152 7.5e-08 60.8 97 41.2
Prupe.4G083100 Prunus persica HOM05D007268 ORTHO05D009152 7.5e-08 60.8 116 40.5
Rhsim13G0115400 Rhododendron simsii HOM05D007268 ORTHO05D009152 7.5e-08 60.8 96 39.6
Dinv32234 Davidia involucrata HOM05D007268 ORTHO05D009152 9.9e-08 60.5 108 38.9
FAN21G3321 Fragaria x ananassa HOM05D007268 ORTHO05D009152 9.9e-08 60.5 68 50.0
MCO15G665 Micromonas commoda HOM05D007268 ORTHO05D009152 9.9e-08 60.5 96 39.6
vmacro03337 Vaccinium macrocarpon HOM05D007268 ORTHO05D009152 9.9e-08 60.5 96 39.6
HPP92_004157 Vanilla planifolia HOM05D007268 ORTHO05D009152 9.9e-08 60.5 73 47.9
MBI02_g43299_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 1.7e-07 59.7 67 49.3
unitig_37.g12097 Utricularia gibba HOM05D007268 ORTHO05D009152 2.9e-07 58.9 89 37.1
Oeu030940.1 Olea europaea HOM05D007268 ORTHO05D009152 3.7e-07 58.5 89 39.3
SGA_v2.0_scaffold1G00193 Striga asiatica HOM05D007268 ORTHO05D009152 3.7e-07 58.5 98 34.7
Migut.M00895 Erythranthe guttata HOM05D007268 ORTHO05D009152 4.9e-07 58.2 93 36.6
HanXRQChr04g0115721 Helianthus annuus HOM05D007268 ORTHO05D009152 6.4e-07 57.8 74 43.2
CBR_g29441 Chara braunii HOM05D007268 ORTHO05D009152 1.9e-06 56.2 110 32.7
Os06g0677600 Oryza sativa ssp. japonica HOM05D007268 ORTHO05D009152 1.9e-06 56.2 112 35.7
Cc09_g08780 Coffea canephora HOM05D007268 ORTHO05D009152 2.4e-06 55.8 74 41.9
unitig_92.g28163 Utricularia gibba HOM05D007268 ORTHO05D009152 4.1e-06 55.1 89 36.0
SalBow8G1886 Salvia bowleyana HOM05D007268 ORTHO05D009152 5.4e-06 54.7 74 39.2


User provided reference genes

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