Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00005582 Prasinoderma coloniale HOM05D044807 ORTHO05D001264 3.6e-100 368.2 184 100.0
PRCOL_00003881 Prasinoderma coloniale HOM05D044807 ORTHO05D001264 1.0e-17 94.4 174 33.3
PRCOL_00005586 Prasinoderma coloniale HOM05D001405 ORTHO05D001264 2.2e-12 76.6 157 36.3
Carub.0001s0818 Capsella rubella HOM05D001405 ORTHO05D001264 5.5e-08 62.0 177 31.1
CsaV3_4G013220 Cucumis sativus L. HOM05D001405 ORTHO05D001264 5.5e-08 62.0 181 29.3
Pp3c24_4100 Physcomitrium patens HOM05D001405 ORTHO05D001264 7.2e-08 61.6 168 29.8
SalBow6G1068 Salvia bowleyana HOM05D001405 ORTHO05D001264 7.2e-08 61.6 198 31.8
MELO3C008809.2 Cucumis melo HOM05D001405 ORTHO05D001264 9.4e-08 61.2 176 29.5
Lj1g0026057 Lotus japonicus HOM05D001405 ORTHO05D001264 1.2e-07 60.8 172 29.1
Potri.013G031100 Populus trichocarpa HOM05D001405 ORTHO05D001264 1.2e-07 60.8 180 30.6
Sp1g07470 Schrenkiella parvula HOM05D001405 ORTHO05D001264 1.2e-07 60.8 177 29.9
BolC8t52509H Brassica oleracea HOM05D001405 ORTHO05D001264 1.6e-07 60.5 176 30.1
MCO02G254 Micromonas commoda HOM05D001405 ORTHO05D001264 1.6e-07 60.5 146 30.8
Phvul.006G097000 Phaseolus vulgaris HOM05D001405 ORTHO05D001264 1.6e-07 60.5 172 29.7
Zm00001eb394700 Zea mays HOM05D001405 ORTHO05D001264 1.6e-07 60.5 172 29.1
Nn4g26049 Nelumbo nucifera HOM05D001405 ORTHO05D001264 2.1e-07 60.1 183 30.6
arahy.Tifrunner.gnm1.ann1.CHB81T Arachis hypogaea HOM05D001405 ORTHO05D001264 2.7e-07 59.7 181 30.4
BcaC07g41924 Brassica carinata HOM05D001405 ORTHO05D001264 2.7e-07 59.7 177 29.9
Ciclev10002756m.g Citrus clementina HOM05D001405 ORTHO05D001264 2.7e-07 59.7 156 31.4
Zm00001eb016940 Zea mays HOM05D001405 ORTHO05D001264 2.7e-07 59.7 172 29.1
C08p49820 Brassica napus HOM05D001405 ORTHO05D001264 3.6e-07 59.3 176 29.5
Migut.N00127 Erythranthe guttata HOM05D001405 ORTHO05D001264 3.6e-07 59.3 180 30.6
Gohir.A13G100600 Gossypium hirsutum HOM05D001405 ORTHO05D001264 3.6e-07 59.3 180 30.6
Gorai.013G116800 Gossypium raimondii HOM05D001405 ORTHO05D001264 3.6e-07 59.3 180 30.6
Medtr7g114240 Medicago truncatula HOM05D001405 ORTHO05D001264 3.6e-07 59.3 172 29.7
PSO339G2292 Papaver somniferum HOM05D001405 ORTHO05D001264 3.6e-07 59.3 123 35.0
PGSC0003DMG400010660 Solanum tuberosum HOM05D001405 ORTHO05D001264 3.6e-07 59.3 180 30.0
TWI56G1134 Tripterygium wilfordii HOM05D001405 ORTHO05D001264 3.6e-07 59.3 172 29.1
Aa31sc17G240 Aethionema arabicum HOM05D001405 ORTHO05D001264 4.7e-07 58.9 182 28.6
CiPaw.07G011000 Carya illinoinensis HOM05D001405 ORTHO05D001264 4.7e-07 58.9 172 27.9
Solyc01g067740.3 Solanum lycopersicum HOM05D001405 ORTHO05D001264 4.7e-07 58.9 180 30.0
Sopen01g029690 Solanum pennellii HOM05D001405 ORTHO05D001264 4.7e-07 58.9 180 30.0
ATR0706G086 Amborella trichopoda HOM05D001405 ORTHO05D001264 6.1e-07 58.5 172 29.7
MSTRG.10046 Avicennia marina HOM05D001405 ORTHO05D001264 6.1e-07 58.5 180 29.4
Thhalv10008927m.g Eutrema salsugineum HOM05D001405 ORTHO05D001264 6.1e-07 58.5 177 29.4
AL1G19260 Arabidopsis lyrata HOM05D001405 ORTHO05D001264 8.0e-07 58.2 176 29.0
A09p65750 Brassica napus HOM05D001405 ORTHO05D001264 8.0e-07 58.2 176 29.0
BraA09t41918Z Brassica rapa HOM05D001405 ORTHO05D001264 8.0e-07 58.2 176 29.0
MELO3C015374.2 Cucumis melo HOM05D001405 ORTHO05D001264 8.0e-07 58.2 177 27.7
HanXRQChr14g0438141 Helianthus annuus HOM05D001405 ORTHO05D001264 8.0e-07 58.2 177 28.2
Ah.04g160010 Amaranthus hybridus HOM05D001405 ORTHO05D001264 1.0e-06 57.8 177 30.5
arahy.Tifrunner.gnm1.ann1.8W91IE Arachis hypogaea HOM05D001405 ORTHO05D001264 1.0e-06 57.8 180 30.6
Ca_09390_v3 Cicer arietinum L. HOM05D001405 ORTHO05D001264 1.0e-06 57.8 172 30.2
Gohir.D13G104200 Gossypium hirsutum HOM05D001405 ORTHO05D001264 1.0e-06 57.8 180 30.0
Aqoxy2G00518 Aquilegia oxysepala HOM05D001405 ORTHO05D001264 1.4e-06 57.4 192 26.0
C05p06920 Brassica napus HOM05D001405 ORTHO05D002266 1.4e-06 57.4 177 29.4
Cpa.g.sc51.134 Carica papaya HOM05D001405 ORTHO05D001264 1.4e-06 57.4 183 30.6
Haze_04288 Corylus avellana HOM05D001405 ORTHO05D001264 1.4e-06 57.4 177 27.1
Manes.09G160400 Manihot esculenta HOM05D001405 ORTHO05D001264 1.4e-06 57.4 156 31.4
PGR004G1177 Punica granatum HOM05D001405 ORTHO05D001264 1.4e-06 57.4 172 30.2
SEGI_34659 Sequoiadendron giganteum HOM05D001405 ORTHO05D001264 1.4e-06 57.4 123 35.0
Atru.chr2.627 Acer truncatum HOM05D001405 ORTHO05D001264 1.8e-06 57.0 180 30.0
A06p05730 Brassica napus HOM05D001405 ORTHO05D002266 1.8e-06 57.0 177 29.4
BolC5t29449H Brassica oleracea HOM05D001405 ORTHO05D001264 1.8e-06 57.0 176 29.5
CSS0036639 Camellia sinensis var. sinensis HOM05D001405 ORTHO05D001264 1.8e-06 57.0 180 31.1
CARHR008750 Cardamine hirsuta HOM05D001405 ORTHO05D001264 1.8e-06 57.0 171 29.2
CDE12G0305 Ceratophyllum demersum HOM05D001405 ORTHO05D001264 1.8e-06 57.0 171 29.2
Hma1.2p1_0643F.1_g194750 Hydrangea macrophylla HOM05D001405 ORTHO05D001264 1.8e-06 57.0 171 29.2
Hma1.2p1_0823F.1_g224555 Hydrangea macrophylla HOM05D001405 ORTHO05D001264 1.8e-06 57.0 171 29.2
Lj3C811T8 Lonicera japonica HOM05D001405 ORTHO05D001264 1.8e-06 57.0 170 28.8
MBI18_g08827_MAGBIO Magnolia biondii HOM05D001405 ORTHO05D001264 1.8e-06 57.0 180 30.0
Os07g0665200 Oryza sativa ssp. japonica HOM05D001405 ORTHO05D001264 1.8e-06 57.0 180 28.9
Sabra13G0030300 Salix brachista HOM05D001405 ORTHO05D001264 1.8e-06 57.0 180 29.4
AT1G08830 Arabidopsis thaliana HOM05D001405 ORTHO05D001264 2.3e-06 56.6 177 29.4
CDE01G0498 Ceratophyllum demersum HOM05D001405 ORTHO05D001264 2.3e-06 56.6 171 28.7
COL.COLO4_36053 Corchorus olitorius HOM05D001405 ORTHO05D001264 2.3e-06 56.6 180 30.0
Manes.08G125400 Manihot esculenta HOM05D001405 ORTHO05D001264 2.3e-06 56.6 180 30.0
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 2.3e-06 56.6 171 28.7
THA.LOC104823740 Tarenaya hassleriana HOM05D001405 ORTHO05D001264 2.3e-06 56.6 180 28.9
unitig_748.g8366 Utricularia gibba HOM05D001405 ORTHO05D001264 2.3e-06 56.6 171 29.8
Aqoxy5G00627 Aquilegia oxysepala HOM05D001405 ORTHO05D001264 3.0e-06 56.2 180 30.6
EL10Ac4g09246 Beta vulgaris HOM05D001405 ORTHO05D001264 3.0e-06 56.2 171 29.8
BcaC05g24743 Brassica carinata HOM05D001405 ORTHO05D002266 3.0e-06 56.2 153 30.7
DCAR_030571 Daucus carota HOM05D001405 ORTHO05D001264 3.0e-06 56.2 171 28.7
Glyma.19G240400 Glycine max HOM05D001405 ORTHO05D001264 3.0e-06 56.2 172 29.1
Nitab4.5_0002884g0060 Nicotiana tabacum HOM05D001405 ORTHO05D001264 3.0e-06 56.2 180 29.4
Nitab4.5_0003067g0030 Nicotiana tabacum HOM05D001405 ORTHO05D001264 3.0e-06 56.2 180 29.4
Hund07016 Selenicereus undatus HOM05D001405 ORTHO05D001264 3.0e-06 56.2 177 29.9
unitig_32.g10787 Utricularia gibba HOM05D001405 ORTHO05D001264 3.0e-06 56.2 170 29.4
HanXRQChr07g0190131 Helianthus annuus HOM05D001405 ORTHO05D001264 4.0e-06 55.8 180 29.4
MD00G1051500 Malus domestica HOM05D001405 ORTHO05D001264 4.0e-06 55.8 172 27.9
PSO801G0219 Papaver somniferum HOM05D001405 ORTHO05D001264 4.0e-06 55.8 164 31.1
SGA_v2.0_scaffold57G20263 Striga asiatica HOM05D001405 ORTHO05D001264 4.0e-06 55.8 171 28.1
Actinidia32383 Actinidia chinensis HOM05D001405 ORTHO05D001264 5.2e-06 55.5 179 29.6
BraA06t23783Z Brassica rapa HOM05D001405 ORTHO05D001264 5.2e-06 55.5 170 28.2
Lalb_Chr02g0157181 Lupinus albus HOM05D001405 ORTHO05D001264 5.2e-06 55.5 185 28.6
Lalb_Chr18g0045281 Lupinus albus HOM05D001405 ORTHO05D001264 5.2e-06 55.5 171 28.7
Os03g0351500 Oryza sativa ssp. japonica HOM05D001405 ORTHO05D001264 5.2e-06 55.5 172 29.1
Peaxi162Scf00983g00213 Petunia axillaris HOM05D001405 ORTHO05D001264 5.2e-06 55.5 153 34.0
DCAR_002436 Daucus carota HOM05D001405 ORTHO05D001264 6.7e-06 55.1 171 29.2
ECA233G4942 Erigeron canadensis HOM05D001405 ORTHO05D001264 6.7e-06 55.1 180 29.4
Pp3c20_17920 Physcomitrium patens HOM05D001405 ORTHO05D001264 6.7e-06 55.1 182 26.9
GSVIVG01021959001 Vitis vinifera HOM05D001405 ORTHO05D001264 6.7e-06 55.1 180 28.9
EL10Ac9g22624 Beta vulgaris HOM05D001405 ORTHO05D001264 8.8e-06 54.7 186 29.6
CANSAT64G0315 Cannabis sativa HOM05D001405 ORTHO05D001264 8.8e-06 54.7 158 32.3
AUR62000929 Chenopodium quinoa HOM05D001405 ORTHO05D001264 8.8e-06 54.7 171 29.8
HanXRQChr08g0227691 Helianthus annuus HOM05D001405 ORTHO05D001264 8.8e-06 54.7 180 30.0
MD11G1148200 Malus domestica HOM05D001405 ORTHO05D001264 8.8e-06 54.7 123 33.3
PGR083G2434 Punica granatum HOM05D001405 ORTHO05D001264 8.8e-06 54.7 171 28.1
HPP92_018409 Vanilla planifolia HOM05D001405 ORTHO05D001264 8.8e-06 54.7 180 28.9


User provided reference genes

Program Settings