Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00005576 Prasinoderma coloniale HOM05D003450 ORTHO05D004150 0.0e+00 1559.7 931 100.0
Mapoly0097s0078 Marchantia polymorpha HOM05D003450 ORTHO05D004150 1.6e-87 328.6 990 33.0
SMO367G1196 Selaginella moellendorffii HOM05D003450 ORTHO05D004150 2.0e-85 321.6 988 33.7
Pp3c3_27420 Physcomitrium patens HOM05D003450 ORTHO05D004150 8.2e-84 316.2 976 32.9
AagrBONN_evm.TU.Sc2ySwM_344.991 Anthoceros agrestis HOM05D003450 ORTHO05D004150 6.9e-83 313.2 996 32.7
Ciclev10014189m.g Citrus clementina HOM05D003450 ORTHO05D004150 1.0e-73 282.7 961 31.6
MELO3C021591.2 Cucumis melo HOM05D003450 ORTHO05D004150 2.9e-73 281.2 959 31.1
MCO05G130 Micromonas commoda HOM05D003450 ORTHO05D004150 3.8e-73 280.8 945 31.5
MBI14_g36922_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 6.5e-73 280.0 969 31.5
ATR0068G094 Amborella trichopoda HOM05D003450 ORTHO05D004150 1.1e-72 279.3 967 31.0
CsaV3_5G027040 Cucumis sativus L. HOM05D003450 ORTHO05D004150 1.1e-72 279.3 961 31.0
Dinv37611 Davidia involucrata HOM05D003450 ORTHO05D004150 1.5e-72 278.9 973 31.3
PGR142G3144 Punica granatum HOM05D003450 ORTHO05D004150 1.9e-72 278.5 958 31.5
RcHm_v2.0_Chr2g0173241 Rosa chinensis HOM05D003450 ORTHO05D004150 3.2e-72 277.7 965 31.4
MD17G1022800 Malus domestica HOM05D003450 ORTHO05D004150 9.4e-72 276.2 966 29.9
CiPaw.09G022500 Carya illinoinensis HOM05D003450 ORTHO05D004150 3.6e-71 274.2 968 31.5
GSVIVG01000649001 Vitis vinifera HOM05D003450 ORTHO05D004150 3.6e-71 274.2 962 31.4
Peaxi162Scf00074g01921 Petunia axillaris HOM05D003450 ORTHO05D004150 8.0e-71 273.1 972 30.9
MD09G1023300 Malus domestica HOM05D003450 ORTHO05D004150 2.3e-70 271.6 966 29.5
CSS0002385 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 4.0e-70 270.8 971 30.8
FAN05G3254 Fragaria x ananassa HOM05D003450 ORTHO05D004150 3.3e-69 267.7 958 30.6
FAN14G2265 Fragaria x ananassa HOM05D003450 ORTHO05D004150 3.3e-69 267.7 960 30.8
Sed0008503 Sechium edule HOM05D003450 ORTHO05D004150 3.3e-69 267.7 963 30.7
FvH4_6g51710 Fragaria vesca HOM05D003450 ORTHO05D004150 4.4e-69 267.3 960 30.8
Lalb_Chr15g0086731 Lupinus albus HOM05D003450 ORTHO05D004150 5.7e-69 266.9 964 30.9
Sed0014883 Sechium edule HOM05D003450 ORTHO05D004150 5.7e-69 266.9 957 30.2
Potri.001G343500 Populus trichocarpa HOM05D003450 ORTHO05D004150 9.7e-69 266.2 958 30.4
CANSAT64G2043 Cannabis sativa HOM05D003450 ORTHO05D004150 1.3e-68 265.8 961 30.4
Gorai.012G065100 Gossypium raimondii HOM05D003450 ORTHO05D004150 4.8e-68 263.8 964 30.3
Haze_14757 Corylus avellana HOM05D003450 ORTHO05D004150 8.2e-68 263.1 975 30.7
Lalb_Chr18g0055341 Lupinus albus HOM05D003450 ORTHO05D004150 8.2e-68 263.1 962 29.8
Aqoxy6G00591 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 2.4e-67 261.5 970 30.9
Hma1.2p1_1136F.1_g260470 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 2.4e-67 261.5 981 29.9
Nn2g10559 Nelumbo nucifera HOM05D003450 ORTHO05D004150 2.4e-67 261.5 972 30.3
QL02p074015 Quercus lobata HOM05D003450 ORTHO05D004150 2.4e-67 261.5 972 30.3
MSTRG.11963 Avicennia marina HOM05D003450 ORTHO05D004150 5.3e-67 260.4 959 31.1
Glyma.19G056700 Glycine max HOM05D003450 ORTHO05D004150 5.3e-67 260.4 975 31.0
HanXRQChr17g0533281 Helianthus annuus HOM05D003450 ORTHO05D004150 5.3e-67 260.4 962 29.6
Sabra16G0222800 Salix brachista HOM05D003450 ORTHO05D004150 7.0e-67 260.0 959 30.1
ECA246G5325 Erigeron canadensis HOM05D003450 ORTHO05D004150 9.1e-67 259.6 957 30.4
Phvul.004G005200 Phaseolus vulgaris HOM05D003450 ORTHO05D004150 9.1e-67 259.6 968 29.4
Thecc.04G019300 Theobroma cacao HOM05D003450 ORTHO05D004150 9.1e-67 259.6 965 29.9
Cfa007340 Carpinus fangiana HOM05D003450 ORTHO05D004150 1.2e-66 259.2 975 30.3
QL03p035003 Quercus lobata HOM05D003450 ORTHO05D004150 1.2e-66 259.2 963 30.2
Cc08_g15080 Coffea canephora HOM05D003450 ORTHO05D004150 2.7e-66 258.1 964 29.9
Lsat_1_v5_gn_3_9121 Lactuca sativa HOM05D003450 ORTHO05D004150 2.7e-66 258.1 969 30.2
THA.LOC104823952 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 3.5e-66 257.7 968 29.8
Manes.17G111200 Manihot esculenta HOM05D003450 ORTHO05D004150 1.0e-65 256.1 955 30.1
Ca_04147_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 1.3e-65 255.8 971 29.4
Ca_30596_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 1.3e-65 255.8 971 29.4
Duzib147G0628 Durio zibethinus HOM05D003450 ORTHO05D004150 1.7e-65 255.4 960 29.9
Prupe.3G293600 Prunus persica HOM05D003450 ORTHO05D004150 2.9e-65 254.6 950 30.3
BcaC06g33806 Brassica carinata HOM05D003450 ORTHO05D004150 3.8e-65 254.2 963 29.4
AUR62009512 Chenopodium quinoa HOM05D003450 ORTHO05D004150 3.8e-65 254.2 953 29.4
BcaC06g30980 Brassica carinata HOM05D003450 ORTHO05D004150 8.5e-65 253.1 968 29.9
Eucgr.I01732 Eucalyptus grandis HOM05D003450 ORTHO05D004150 8.5e-65 253.1 978 30.2
Glyma.19G003200 Glycine max HOM05D003450 ORTHO05D004150 1.1e-64 252.7 971 29.8
C07p36640 Brassica napus HOM05D003450 ORTHO05D004150 1.9e-64 251.9 963 29.3
AUR62034774 Chenopodium quinoa HOM05D003450 ORTHO05D004150 3.2e-64 251.1 953 29.3
THA.LOC104825318 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 3.2e-64 251.1 958 29.9
Medtr6g004510 Medicago truncatula HOM05D003450 ORTHO05D004150 4.2e-64 250.8 963 29.3
BolC7t44182H Brassica oleracea HOM05D003450 ORTHO05D004150 9.4e-64 249.6 964 29.4
Nitab4.5_0002282g0060 Nicotiana tabacum HOM05D003450 ORTHO05D004150 9.4e-64 249.6 957 30.1
TPR.G31948 Trifolium pratense HOM05D003450 ORTHO05D004150 1.6e-63 248.8 958 29.5
TWI56G0323 Tripterygium wilfordii HOM05D003450 ORTHO05D004150 1.6e-63 248.8 970 30.4
A06p41100 Brassica napus HOM05D003450 ORTHO05D004150 2.1e-63 248.4 973 29.1
BraA06t27033Z Brassica rapa HOM05D003450 ORTHO05D004150 2.1e-63 248.4 973 29.1
Os12g0538900 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 2.1e-63 248.4 954 29.8
VMungo0464G1019 Vigna mungo HOM05D003450 ORTHO05D004150 2.1e-63 248.4 976 29.4
ClCG09G019370 Citrullus lanatus HOM05D003450 ORTHO05D004150 2.7e-63 248.1 959 30.2
Oeu042349.1 Olea europaea HOM05D003450 ORTHO05D004150 3.6e-63 247.7 976 29.8
CAN.G532.15 Capsicum annuum HOM05D003450 ORTHO05D004150 4.7e-63 247.3 960 29.9
Lj2g0026665 Lotus japonicus HOM05D003450 ORTHO05D004150 4.0e-62 244.2 970 29.5
PSO421G0225 Papaver somniferum HOM05D003450 ORTHO05D004150 6.8e-62 243.4 969 30.8
Aa31LG2G5130 Aethionema arabicum HOM05D003450 ORTHO05D004150 8.8e-62 243.0 956 29.8
Sopen08g029730 Solanum pennellii HOM05D003450 ORTHO05D004150 1.2e-61 242.7 974 29.4
BcaB07g30154 Brassica carinata HOM05D003450 ORTHO05D004150 2.6e-61 241.5 959 29.1
Lj5C248G9 Lonicera japonica HOM05D003450 ORTHO05D004150 2.6e-61 241.5 972 29.5
Psat1g053760 Pisum sativum HOM05D003450 ORTHO05D004150 2.6e-61 241.5 972 29.3
Manes.15G151800 Manihot esculenta HOM05D003450 ORTHO05D004150 3.4e-61 241.1 961 29.1
unitig_61.g26360 Utricularia gibba HOM05D003450 ORTHO05D004150 3.4e-61 241.1 961 29.3
Nitab4.5_0006540g0050 Nicotiana tabacum HOM05D003450 ORTHO05D004150 4.4e-61 240.7 988 30.0
A02p35530 Brassica napus HOM05D003450 ORTHO05D004150 7.5e-61 240.0 967 29.5
DCAR_004619 Daucus carota HOM05D003450 ORTHO05D004150 7.5e-61 240.0 961 29.2
BraA02t08553Z Brassica rapa HOM05D003450 ORTHO05D004150 9.8e-61 239.6 967 29.8
CARHR148900 Cardamine hirsuta HOM05D003450 ORTHO05D004150 9.8e-61 239.6 969 29.6
HPP92_017150 Vanilla planifolia HOM05D003450 ORTHO05D004150 9.8e-61 239.6 957 29.3
FAN02G3092 Fragaria x ananassa HOM05D003450 ORTHO05D004150 2.8e-60 238.0 968 30.5
HPP92_017154 Vanilla planifolia HOM05D003450 ORTHO05D004150 8.3e-60 236.5 953 29.2
BcaC03g17471 Brassica carinata HOM05D003450 ORTHO05D004150 1.4e-59 235.7 965 29.4
FAN09G1073 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.4e-59 235.7 969 30.0
SGA_v2.0_scaffold76G25156 Striga asiatica HOM05D003450 ORTHO05D004150 1.8e-59 235.3 964 29.3
PSO063G0895 Papaver somniferum HOM05D003450 ORTHO05D004150 5.4e-59 233.8 974 30.2
Duzib264G1290 Durio zibethinus HOM05D003450 ORTHO05D004150 9.1e-59 233.0 856 29.9
arahy.Tifrunner.gnm1.ann1.F3BVF1 Arachis hypogaea HOM05D003450 ORTHO05D004150 2.0e-58 231.9 961 29.2
SalBow8G1997 Salvia bowleyana HOM05D003450 ORTHO05D004150 2.7e-58 231.5 955 28.9
Hund15478 Selenicereus undatus HOM05D003450 ORTHO05D004150 2.7e-58 231.5 969 30.0
C02p54300 Brassica napus HOM05D003450 ORTHO05D004150 5.9e-58 230.3 964 29.4
BolC2t11498H Brassica oleracea HOM05D003450 ORTHO05D004150 5.9e-58 230.3 964 29.4
Thhalv10003626m.g Eutrema salsugineum HOM05D003450 ORTHO05D004150 1.7e-57 228.8 969 28.8
arahy.Tifrunner.gnm1.ann1.Q7XHAR Arachis hypogaea HOM05D003450 ORTHO05D004150 2.9e-57 228.0 975 29.4
Ah.02g116930 Amaranthus hybridus HOM05D003450 ORTHO05D004150 6.5e-57 226.9 954 28.6
TAR623G1303 Trochodendron aralioides HOM05D003450 ORTHO05D004150 6.5e-57 226.9 706 33.0
ECA233G1844 Erigeron canadensis HOM05D003450 ORTHO05D004150 2.5e-56 224.9 951 28.8
Sc07g0005180 Simmondsia chinensis HOM05D003450 ORTHO05D004150 1.2e-55 222.6 705 31.2
AT3G27530 Arabidopsis thaliana HOM05D003450 ORTHO05D004150 2.1e-55 221.9 969 28.4
Sp2g16700 Schrenkiella parvula HOM05D003450 ORTHO05D004150 8.0e-55 219.9 969 28.8
EL10Ac5g11313 Beta vulgaris HOM05D003450 ORTHO05D004150 8.8e-54 216.5 947 28.0
SalBow8G1100 Salvia bowleyana HOM05D003450 ORTHO05D004150 5.7e-53 213.8 952 28.2
Hma1.2p1_1172F.1_g263680 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 9.8e-53 213.0 654 31.5
PSO210G4892 Papaver somniferum HOM05D003450 ORTHO05D004150 2.8e-52 211.5 944 29.8
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 3.7e-52 211.1 573 33.3
Atru.chr6.2426 Acer truncatum HOM05D003450 ORTHO05D004150 6.3e-52 210.3 597 33.5
AL5G16950 Arabidopsis lyrata HOM05D003450 ORTHO05D004150 6.3e-52 210.3 961 27.8
Migut.E01197 Erythranthe guttata HOM05D003450 ORTHO05D004150 1.1e-51 209.5 704 30.5
Zm00001eb410430 Zea mays HOM05D003450 ORTHO05D004150 1.8e-51 208.8 956 28.0
Carub.0005s0596 Capsella rubella HOM05D003450 ORTHO05D004150 3.5e-50 204.5 968 27.7
PSO210G3071 Papaver somniferum HOM05D003450 ORTHO05D004150 4.5e-50 204.1 946 28.9
Hund02491 Selenicereus undatus HOM05D003450 ORTHO05D004150 1.7e-49 202.2 860 29.1
vmacro11398 Vaccinium macrocarpon HOM05D003450 ORTHO05D004150 1.5e-48 199.1 1042 27.4
Gohir.D04G058400 Gossypium hirsutum HOM05D003450 ORTHO05D004150 2.5e-48 198.4 587 31.7
CDE09G0700 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 3.4e-45 188.0 579 31.3
Lj8A217T73 Lonicera japonica HOM05D003450 ORTHO05D004150 4.4e-45 187.6 661 31.2
Actinidia14585 Actinidia chinensis HOM05D003450 ORTHO05D004150 6.6e-41 173.7 486 33.3
CDE02G4242 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 1.5e-40 172.6 524 31.9
Solyc08g081410.3 Solanum lycopersicum HOM05D003450 ORTHO05D004150 4.4e-37 161.0 974 25.9
Cre06.g271950 Chlamydomonas reinhardtii HOM05D003450 ORTHO05D004150 5.8e-37 160.6 752 29.3
CBR_g57070 Chara braunii HOM05D003450 ORTHO05D004150 1.1e-32 146.4 1256 26.9
Gohir.A05G354700 Gossypium hirsutum HOM05D003450 ORTHO05D004150 3.1e-30 138.3 619 28.8
CSS0048429 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.0e-29 135.6 860 26.4
CSS0005577 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.9e-25 121.3 948 25.6
Zm00001eb137680 Zea mays HOM05D003450 ORTHO05D004150 8.6e-25 120.2 638 26.5
COL.COLO4_29171 Corchorus olitorius HOM05D003450 ORTHO05D004150 7.3e-24 117.1 955 24.8
Dinv38912 Davidia involucrata HOM05D003450 ORTHO05D004150 2.8e-23 115.2 205 39.5
CSS0024266 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.6e-23 114.8 982 25.1
Hma1.2p1_1136F.1_g260480 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 1.7e-20 105.9 454 28.0
Gohir.A05G354750 Gossypium hirsutum HOM05D003450 ORTHO05D004150 2.9e-20 105.1 200 37.5
Oeu059564.1 Olea europaea HOM05D003450 ORTHO05D004150 3.2e-19 101.7 501 27.7
PGSC0003DMG400012328 Solanum tuberosum HOM05D003450 ORTHO05D004150 4.1e-19 101.3 493 27.6
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 3.3e-16 91.7 150 37.3
CSS0021042 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 6.9e-14 84.0 582 26.1
Solyc02g084490.1 Solanum lycopersicum HOM05D003450 ORTHO05D004150 5.4e-11 74.3 424 26.7
Gohir.D07G231100 Gossypium hirsutum HOM05D003450 ORTHO05D004150 2.7e-10 72.0 218 30.7
MBI14_g35409_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 3.5e-10 71.6 473 26.4
MBI14_g31103_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 5.1e-09 67.8 463 26.1
TPR.G33285 Trifolium pratense HOM05D003450 ORTHO05D004150 6.6e-09 67.4 74 47.3
Cfa023435 Carpinus fangiana HOM05D003450 ORTHO05D125710 5.6e-08 64.3 216 29.2
Sc07g0005170 Simmondsia chinensis HOM05D003450 ORTHO05D004150 7.3e-08 63.9 143 37.1
Zm00001eb420770 Zea mays HOM05D003450 ORTHO05D004150 7.3e-08 63.9 202 31.2
Zm00001eb442080 Zea mays HOM05D003450 ORTHO05D004150 7.3e-08 63.9 202 31.2
Zm00001eb191840 Zea mays HOM05D003450 ORTHO05D004150 1.3e-07 63.2 195 31.8
Zm00001eb068810 Zea mays HOM05D003450 ORTHO05D004150 1.6e-07 62.8 195 30.3
Zm00001eb190000 Zea mays HOM05D003450 ORTHO05D004150 1.6e-07 62.8 195 30.3
TAR623G1393 Trochodendron aralioides HOM05D003450 ORTHO05D004150 2.1e-07 62.4 227 31.3
arahy.Tifrunner.gnm1.ann1.ST064T Arachis hypogaea HOM05D003450 ORTHO05D004150 2.8e-07 62.0 228 31.1
Zm00001eb162870 Zea mays HOM05D003450 ORTHO05D004150 2.8e-07 62.0 195 31.8
SEGI_37208 Sequoiadendron giganteum HOM05D003450 ORTHO05D004150 3.6e-07 61.6 146 35.6
Zm00001eb170860 Zea mays HOM05D003450 ORTHO05D004150 1.4e-06 59.7 195 29.7
Zm00001eb235100 Zea mays HOM05D003450 ORTHO05D004150 1.4e-06 59.7 195 30.3
Gohir.D04G058450 Gossypium hirsutum HOM05D003450 ORTHO05D004150 2.4e-06 58.9 325 28.3


User provided reference genes

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