Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 7.0e-180 634.0 364 100.0
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.4e-34 151.4 356 32.6
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.4e-33 146.7 306 34.6
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 4.4e-33 146.4 295 34.2
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 2.9e-32 143.7 296 33.4
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 1.4e-31 141.4 309 34.0
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.8e-31 141.0 295 33.6
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 3.2e-31 140.2 293 33.4
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 3.2e-31 140.2 293 33.4
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 3.2e-31 140.2 293 33.4
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 9.2e-31 138.7 324 32.4
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 1.2e-30 138.3 309 32.4
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.2e-30 138.3 332 33.1
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 2.0e-30 137.5 362 30.9
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.0e-30 137.5 309 33.3
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.0e-30 137.5 309 32.0
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.5e-30 136.7 303 31.7
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 4.6e-30 136.3 320 30.3
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 5.9e-30 136.0 325 30.8
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 7.8e-30 135.6 293 33.1
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 1.0e-29 135.2 313 33.2
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 1.0e-29 135.2 313 33.2
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.3e-29 134.8 323 29.7
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 1.3e-29 134.8 301 33.2
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.3e-29 134.8 335 30.4
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 2.3e-29 134.0 292 32.9
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 2.9e-29 133.7 362 30.4
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 2.9e-29 133.7 309 32.0
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 5.0e-29 132.9 312 32.7
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 5.0e-29 132.9 314 33.1
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.6e-29 132.5 293 33.1
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 8.6e-29 132.1 293 32.8
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 8.6e-29 132.1 294 32.7
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 8.6e-29 132.1 308 32.5
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.1e-28 131.7 292 32.2
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 1.1e-28 131.7 337 30.6
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.1e-28 131.7 293 32.8
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.5e-28 131.3 314 32.8
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.5e-28 131.3 314 32.8
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.5e-28 131.3 302 31.1
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.9e-28 131.0 337 30.9
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.9e-28 131.0 362 29.6
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.9e-28 131.0 309 30.4
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 2.5e-28 130.6 314 32.2
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 3.3e-28 130.2 301 32.2
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 3.3e-28 130.2 318 30.8
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.3e-28 130.2 326 31.3
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 4.3e-28 129.8 293 31.7
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 5.6e-28 129.4 301 32.2
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 5.6e-28 129.4 295 30.5
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 5.6e-28 129.4 306 31.0
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 7.3e-28 129.0 293 32.8
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 7.3e-28 129.0 317 30.3
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 7.3e-28 129.0 336 30.4
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 9.5e-28 128.6 310 32.3
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 9.5e-28 128.6 296 32.1
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.2e-27 128.3 294 31.3
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.2e-27 128.3 291 31.6
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 1.2e-27 128.3 315 31.1
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 1.2e-27 128.3 305 29.8
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 1.6e-27 127.9 293 33.1
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.6e-27 127.9 342 31.0
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.1e-27 127.5 294 33.3
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.1e-27 127.5 292 31.5
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 2.1e-27 127.5 293 31.4
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.1e-27 127.5 310 31.6
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.1e-27 127.5 293 32.8
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 2.1e-27 127.5 292 32.2
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 2.8e-27 127.1 352 31.2
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 3.6e-27 126.7 304 30.6
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 3.6e-27 126.7 339 29.8
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 4.7e-27 126.3 293 31.4
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 4.7e-27 126.3 297 32.0
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 6.1e-27 125.9 295 32.9
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 6.1e-27 125.9 293 31.4
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.1e-27 125.9 310 31.9
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 8.0e-27 125.6 317 30.9
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 8.0e-27 125.6 320 28.8
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.0e-26 125.2 304 30.6
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.4e-26 124.8 307 30.3
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.4e-26 124.8 312 32.1
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.8e-26 124.4 292 31.8
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.8e-26 124.4 312 31.1
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 2.3e-26 124.0 290 32.1
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 2.3e-26 124.0 307 30.3
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 2.3e-26 124.0 292 32.5
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 3.1e-26 123.6 298 32.9
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 3.1e-26 123.6 294 31.6
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 3.1e-26 123.6 309 31.1
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 3.1e-26 123.6 346 30.1
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 3.1e-26 123.6 327 31.8
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 3.1e-26 123.6 313 31.3
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 3.1e-26 123.6 313 31.3
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 3.1e-26 123.6 313 31.3
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 5.2e-26 122.9 323 28.5
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 6.8e-26 122.5 292 29.8
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 6.8e-26 122.5 323 31.0
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 8.9e-26 122.1 348 30.5
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 8.9e-26 122.1 320 30.3
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 1.2e-25 121.7 324 29.0
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.5e-25 121.3 346 29.8
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.5e-25 121.3 346 29.8
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 2.0e-25 120.9 346 29.8
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.3e-24 118.2 335 29.6
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 2.2e-24 117.5 312 31.1
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.9e-24 117.1 323 28.8
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 1.4e-23 114.8 256 33.2
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.2e-22 111.7 325 28.0
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 8.6e-21 105.5 256 32.0
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 2.5e-20 104.0 267 30.0
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 3.3e-20 103.6 254 32.3
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 7.3e-20 102.4 259 30.5
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 1.6e-19 101.3 270 31.5
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 1.1e-18 98.6 275 31.6
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.4e-18 98.2 319 28.5
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 4.0e-18 96.7 278 30.2
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 2.0e-17 94.4 86 48.8
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 2.0e-17 94.4 306 27.8
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 3.4e-17 93.6 253 30.4
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.6e-14 84.7 356 29.2
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 1.6e-14 84.7 289 26.6
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 4.6e-14 83.2 90 43.3
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 5.1e-13 79.7 93 46.2
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 8.6e-13 79.0 261 29.9
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-12 78.6 110 39.1
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 2.5e-12 77.4 102 41.2
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.8e-11 73.9 149 30.9
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 3.6e-11 73.6 102 39.2
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 1.1e-10 72.0 101 39.6
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 1.4e-10 71.6 145 33.8
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.8e-10 71.2 101 38.6
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 5.2e-10 69.7 101 36.6
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 7.6e-09 65.9 278 26.3
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 9.9e-09 65.5 85 40.0
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 1.7e-08 64.7 107 36.4
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 8.4e-08 62.4 217 25.8
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 8.4e-08 62.4 132 31.8
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 3.2e-07 60.5 67 46.3
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 9.2e-07 58.9 100 37.0


User provided reference genes

Program Settings