Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00004958 Prasinoderma coloniale HOM05D006054 ORTHO05D007951 5.6e-101 370.9 186 100.0
MCO02G248 Micromonas commoda HOM05D006054 ORTHO05D007951 5.2e-22 108.6 186 35.5
MCO04G385 Micromonas commoda HOM05D006054 ORTHO05D007951 9.2e-19 97.8 178 35.4
Cre02.g095097 Chlamydomonas reinhardtii HOM05D006054 ORTHO05D007951 2.5e-16 89.7 177 36.7
FAN18G0499 Fragaria x ananassa HOM05D006054 ORTHO05D007951 1.6e-15 87.0 183 33.3
FAN04G0820 Fragaria x ananassa HOM05D006054 ORTHO05D007951 3.6e-15 85.9 181 33.1
Manes.14G170200 Manihot esculenta HOM05D006054 ORTHO05D007951 3.6e-15 85.9 174 33.3
Pp3c16_12630 Physcomitrium patens HOM05D006054 ORTHO05D007951 6.1e-15 85.1 186 32.8
Cc04_g06390 Coffea canephora HOM05D006054 ORTHO05D007951 8.0e-15 84.7 175 34.9
Sopen03g038040 Solanum pennellii HOM05D006054 ORTHO05D007951 8.0e-15 84.7 183 31.7
Cpa.g.sc3.410 Carica papaya HOM05D006054 ORTHO05D007951 1.0e-14 84.3 175 33.7
FAN08G1083 Fragaria x ananassa HOM05D006054 ORTHO05D007951 1.0e-14 84.3 181 33.1
Thecc.03G053300 Theobroma cacao HOM05D006054 ORTHO05D007951 1.0e-14 84.3 177 33.9
MSTRG.4570 Avicennia marina HOM05D006054 ORTHO05D007951 1.4e-14 84.0 176 32.4
Lj5A155T99 Lonicera japonica HOM05D006054 ORTHO05D007951 1.4e-14 84.0 176 33.0
Lj5A156T88 Lonicera japonica HOM05D006054 ORTHO05D007951 1.4e-14 84.0 176 33.0
BcaC07g41342 Brassica carinata HOM05D006054 ORTHO05D007951 1.8e-14 83.6 177 31.6
BraA09t41376Z Brassica rapa HOM05D006054 ORTHO05D007951 1.8e-14 83.6 178 31.5
PGSC0003DMG400005734 Solanum tuberosum HOM05D006054 ORTHO05D007951 1.8e-14 83.6 183 31.1
Aqoxy3G04019 Aquilegia oxysepala HOM05D006054 ORTHO05D007951 2.3e-14 83.2 180 33.9
AT1G18170 Arabidopsis thaliana HOM05D006054 ORTHO05D007951 2.3e-14 83.2 181 31.5
A09p60070 Brassica napus HOM05D006054 ORTHO05D007951 2.3e-14 83.2 178 31.5
Aa31LG7G2900 Aethionema arabicum HOM05D006054 ORTHO05D007951 3.1e-14 82.8 181 32.0
C08p43510 Brassica napus HOM05D006054 ORTHO05D007951 3.1e-14 82.8 178 31.5
BolC8t51897H Brassica oleracea HOM05D006054 ORTHO05D007951 3.1e-14 82.8 178 32.0
AL1G30540 Arabidopsis lyrata HOM05D006054 ORTHO05D007951 4.0e-14 82.4 179 31.3
Cfa019678 Carpinus fangiana HOM05D006054 ORTHO05D007951 4.0e-14 82.4 182 31.9
Nitab4.5_0008639g0010 Nicotiana tabacum HOM05D006054 ORTHO05D007951 4.0e-14 82.4 175 32.6
Solyc03g119150.4 Solanum lycopersicum HOM05D006054 ORTHO05D007951 4.0e-14 82.4 183 31.1
Carub.0001s1781 Capsella rubella HOM05D006054 ORTHO05D007951 5.2e-14 82.0 179 31.3
Prupe.5G231900 Prunus persica HOM05D006054 ORTHO05D007951 5.2e-14 82.0 181 32.6
RcHm_v2.0_Chr7g0178601 Rosa chinensis HOM05D006054 ORTHO05D007951 5.2e-14 82.0 181 32.0
arahy.Tifrunner.gnm1.ann1.LZ1976 Arachis hypogaea HOM05D006054 ORTHO05D007951 6.8e-14 81.6 177 33.9
Nitab4.5_0001986g0060 Nicotiana tabacum HOM05D000239 ORTHO05D000484 8.9e-14 81.3 178 32.0
arahy.Tifrunner.gnm1.ann1.FT2DSH Arachis hypogaea HOM05D006054 ORTHO05D007951 1.2e-13 80.9 177 33.3
CAN.G1129.15 Capsicum annuum HOM05D006054 ORTHO05D007951 1.2e-13 80.9 183 31.1
MD06G1230600 Malus domestica HOM05D006054 ORTHO05D007951 1.2e-13 80.9 182 33.5
Nn4g24192 Nelumbo nucifera HOM05D006054 ORTHO05D007951 1.2e-13 80.9 175 33.1
PGR044G0876 Punica granatum HOM05D006054 ORTHO05D007951 1.2e-13 80.9 177 32.2
SMO200G0018 Selaginella moellendorffii HOM05D006054 ORTHO05D007951 1.2e-13 80.9 174 31.6
Oeu026288.1 Olea europaea HOM05D006054 ORTHO05D007951 1.5e-13 80.5 176 32.4
Duzib084G0786 Durio zibethinus HOM05D006054 ORTHO05D007951 2.6e-13 79.7 175 32.6
THA.LOC104812166 Tarenaya hassleriana HOM05D006054 ORTHO05D007951 2.6e-13 79.7 176 33.0
GSVIVG01008414001 Vitis vinifera HOM05D006054 ORTHO05D007951 2.6e-13 79.7 180 32.2
Potri.012G048300 Populus trichocarpa HOM05D006054 ORTHO05D007951 3.4e-13 79.3 175 33.1
TAR371G0894 Trochodendron aralioides HOM05D006054 ORTHO05D007951 3.4e-13 79.3 178 32.0
CiPaw.15G140700 Carya illinoinensis HOM05D006054 ORTHO05D007951 4.4e-13 79.0 175 33.1
ClCG04G010700 Citrullus lanatus HOM05D006054 ORTHO05D007951 4.4e-13 79.0 180 31.7
Eucgr.K02266 Eucalyptus grandis HOM05D006054 ORTHO05D007951 4.4e-13 79.0 175 30.9
Lalb_Chr16g0387101 Lupinus albus HOM05D006054 ORTHO05D007951 4.4e-13 79.0 180 32.8
MD14G1235200 Malus domestica HOM05D006054 ORTHO05D007951 5.8e-13 78.6 178 32.6
Sabra12G0033800 Salix brachista HOM05D006054 ORTHO05D007951 5.8e-13 78.6 177 32.2
vmacro16417 Vaccinium macrocarpon HOM05D006054 ORTHO05D007951 7.5e-13 78.2 175 32.0
Actinidia35123 Actinidia chinensis HOM05D006054 ORTHO05D007951 1.3e-12 77.4 175 32.6
Gorai.004G202900 Gossypium raimondii HOM05D006054 ORTHO05D007951 1.3e-12 77.4 175 32.0
QL10p028192 Quercus lobata HOM05D006054 ORTHO05D007951 1.3e-12 77.4 182 30.2
QL10p028307 Quercus lobata HOM05D006054 ORTHO05D007951 1.3e-12 77.4 182 30.2
Gohir.D08G192800 Gossypium hirsutum HOM05D006054 ORTHO05D007951 1.7e-12 77.0 175 31.4
PSO017G1288 Papaver somniferum HOM05D006054 ORTHO05D007951 1.7e-12 77.0 175 31.4
Thhalv10008547m.g Eutrema salsugineum HOM05D006054 ORTHO05D007951 2.2e-12 76.6 178 30.9
Glyma.08G052800 Glycine max HOM05D006054 ORTHO05D007951 2.2e-12 76.6 177 32.2
Mapoly0139s0002 Marchantia polymorpha HOM05D006054 ORTHO05D007951 2.2e-12 76.6 177 33.9
VMungo0251G3760 Vigna mungo HOM05D006054 ORTHO05D007951 2.9e-12 76.3 175 32.6
HanXRQChr08g0227401 Helianthus annuus HOM05D006054 ORTHO05D007951 3.7e-12 75.9 181 31.5
Lj4g0021104 Lotus japonicus HOM05D006054 ORTHO05D007951 3.7e-12 75.9 180 31.7
Nitab4.5_0004028g0050 Nicotiana tabacum HOM05D000239 ORTHO05D000484 3.7e-12 75.9 169 31.4
Os03g0708500 Oryza sativa ssp. japonica HOM05D006054 ORTHO05D007951 3.7e-12 75.9 190 33.2
Rhsim12G0139100 Rhododendron simsii HOM05D006054 ORTHO05D007951 3.7e-12 75.9 181 32.0
Gohir.A08G174100 Gossypium hirsutum HOM05D006054 ORTHO05D007951 4.9e-12 75.5 175 32.0
PSO478G4576 Papaver somniferum HOM05D006054 ORTHO05D007951 4.9e-12 75.5 175 30.9
Zm00001eb216540 Zea mays HOM05D006054 ORTHO05D007951 4.9e-12 75.5 184 33.7
CSS0009173 Camellia sinensis var. sinensis HOM05D006054 ORTHO05D007951 6.4e-12 75.1 181 30.9
CSS0029176 Camellia sinensis var. sinensis HOM05D006054 ORTHO05D007951 6.4e-12 75.1 181 30.9
COL.COLO4_16137 Corchorus olitorius HOM05D006054 ORTHO05D007951 6.4e-12 75.1 175 31.4
Haze_18811 Corylus avellana HOM05D006054 ORTHO05D007951 6.4e-12 75.1 128 35.9
THA.LOC104813923 Tarenaya hassleriana HOM05D006054 ORTHO05D007951 6.4e-12 75.1 173 30.6
TWI60G0269 Tripterygium wilfordii HOM05D006054 ORTHO05D007951 6.4e-12 75.1 176 32.4
MBI12_g30399_MAGBIO Magnolia biondii HOM05D006054 ORTHO05D007951 8.3e-12 74.7 174 29.3
Ciclev10009243m.g Citrus clementina HOM05D006054 ORTHO05D007951 1.4e-11 73.9 175 30.9
Hma1.2p1_0669F.1_g200190 Hydrangea macrophylla HOM05D006054 ORTHO05D007951 1.9e-11 73.6 181 32.0
Sed0027930 Sechium edule HOM05D006054 ORTHO05D007951 2.4e-11 73.2 175 30.3
CsaV3_1G007080 Cucumis sativus L. HOM05D006054 ORTHO05D007951 3.2e-11 72.8 180 29.4
Glyma.05G245200 Glycine max HOM05D006054 ORTHO05D007951 5.4e-11 72.0 175 29.7
Ah.11g043570 Amaranthus hybridus HOM05D006054 ORTHO05D007951 7.0e-11 71.6 170 30.6
ECA233G1701 Erigeron canadensis HOM05D006054 ORTHO05D007951 7.0e-11 71.6 175 28.6
Atru.chr9.1750 Acer truncatum HOM05D006054 ORTHO05D007951 9.2e-11 71.2 127 35.4
Phvul.002G328804 Phaseolus vulgaris HOM05D006054 ORTHO05D007951 9.2e-11 71.2 180 30.0
AUR62041524 Chenopodium quinoa HOM05D006054 ORTHO05D007951 1.2e-10 70.9 126 35.7
DCAR_014010 Daucus carota HOM05D006054 ORTHO05D007951 1.6e-10 70.5 180 30.6
Psat7g002000 Pisum sativum HOM05D006054 ORTHO05D007951 1.6e-10 70.5 182 29.7
Aa31LG4G3960 Aethionema arabicum HOM05D006054 ORTHO05D007951 2.7e-10 69.7 172 27.9
AUR62042074 Chenopodium quinoa HOM05D006054 ORTHO05D007951 2.7e-10 69.7 197 29.4
AUR62043302 Chenopodium quinoa HOM05D006054 ORTHO05D007951 2.7e-10 69.7 214 28.5
MELO3C002126.2 Cucumis melo HOM05D006054 ORTHO05D007951 2.7e-10 69.7 175 31.4
Lsat_1_v5_gn_8_144020 Lactuca sativa HOM05D006054 ORTHO05D007951 3.5e-10 69.3 179 30.2
CARHR018740 Cardamine hirsuta HOM05D006054 ORTHO05D007951 4.6e-10 68.9 112 35.7
Dinv18255 Davidia involucrata HOM05D006054 ORTHO05D007951 6.0e-10 68.6 151 33.1
Medtr8g107010 Medicago truncatula HOM05D006054 ORTHO05D007951 2.3e-09 66.6 180 28.3
Duzib068G1027 Durio zibethinus HOM05D006054 ORTHO05D007951 3.0e-09 66.2 126 33.3
A07p29740 Brassica napus HOM05D006054 ORTHO05D007951 5.0e-09 65.5 169 29.0
BraA07t30613Z Brassica rapa HOM05D006054 ORTHO05D007951 5.0e-09 65.5 169 29.0
BcaC08g45629 Brassica carinata HOM05D006054 ORTHO05D007951 6.6e-09 65.1 169 28.4
TPR.G1413 Trifolium pratense HOM05D006054 ORTHO05D007951 6.6e-09 65.1 182 27.5
BcaB03g15721 Brassica carinata HOM05D006054 ORTHO05D007951 8.6e-09 64.7 174 27.6
CARHR066720 Cardamine hirsuta HOM05D006054 ORTHO05D007951 8.6e-09 64.7 168 27.4
Cre09.g399300 Chlamydomonas reinhardtii HOM05D006054 ORTHO05D044308 1.5e-08 63.9 120 37.5
Peaxi162Scf00683g00146 Petunia axillaris HOM05D006054 ORTHO05D007951 1.5e-08 63.9 173 27.2
ATR1102G034 Amborella trichopoda HOM05D006054 ORTHO05D007951 1.9e-08 63.5 177 27.7
AT1G73655 Arabidopsis thaliana HOM05D006054 ORTHO05D007951 4.3e-08 62.4 175 27.4
TAR629G2851 Trochodendron aralioides HOM05D006054 ORTHO05D007951 5.6e-08 62.0 104 36.5
AL2G33440 Arabidopsis lyrata HOM05D006054 ORTHO05D007951 7.3e-08 61.6 176 27.3
C06p33920 Brassica napus HOM05D006054 ORTHO05D007951 9.5e-08 61.2 169 27.2
BolC6t38505H Brassica oleracea HOM05D006054 ORTHO05D007951 9.5e-08 61.2 169 27.2
Sp5g28830 Schrenkiella parvula HOM05D006054 ORTHO05D007951 9.5e-08 61.2 172 26.7
PRCOL_00004995 Prasinoderma coloniale HOM05D006054 ORTHO05D007951 2.1e-07 60.1 159 32.7
Carub.0002s2040 Capsella rubella HOM05D006054 ORTHO05D007951 4.7e-07 58.9 177 25.4
Thhalv10019056m.g Eutrema salsugineum HOM05D006054 ORTHO05D007951 6.2e-07 58.5 174 25.9
SEGI_05504 Sequoiadendron giganteum HOM05D000371 ORTHO05D003573 6.2e-07 58.5 153 32.0
Nn7g38392 Nelumbo nucifera HOM05D000371 ORTHO05D003573 2.3e-06 56.6 135 31.9
MCO07G350 Micromonas commoda HOM05D006054 ORTHO05D044148 3.1e-06 56.2 129 31.8
CiPaw.10G107200 Carya illinoinensis HOM05D000371 ORTHO05D003573 4.0e-06 55.8 177 30.5
Cre10.g454250 Chlamydomonas reinhardtii HOM05D006054 ORTHO05D044148 4.0e-06 55.8 179 30.2
CBR_g84888 Chara braunii HOM05D000371 ORTHO05D003573 5.2e-06 55.5 127 28.3
arahy.Tifrunner.gnm1.ann1.U3RWIM Arachis hypogaea HOM05D000371 ORTHO05D003573 8.9e-06 54.7 152 30.3
EL10Ac7g17244 Beta vulgaris HOM05D000371 ORTHO05D003573 8.9e-06 54.7 146 28.1
CsaV3_6G053090 Cucumis sativus L. HOM05D000371 ORTHO05D003573 8.9e-06 54.7 154 30.5
Sed0011311 Sechium edule HOM05D000371 ORTHO05D003573 8.9e-06 54.7 134 32.8


User provided reference genes

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