Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 0.0e+00 1471.1 791 100.0
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 3.9e-95 353.6 574 44.1
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 6.7e-95 352.8 598 43.8
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 2.0e-94 351.3 605 42.8
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 3.3e-94 350.5 603 43.6
MCO02G001 Micromonas commoda HOM05D003579 ORTHO05D004266 5.7e-94 349.7 593 43.5
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 1.8e-92 344.7 604 42.5
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 1.2e-91 342.0 600 42.0
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 1.2e-91 342.0 600 42.0
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 2.0e-91 341.3 601 41.6
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 4.5e-91 340.1 601 42.1
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 5.9e-91 339.7 601 41.8
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 7.7e-91 339.3 600 42.2
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 1.7e-90 338.2 603 41.8
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.9e-90 337.4 600 42.2
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 2.9e-90 337.4 601 41.8
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 3.8e-90 337.0 606 41.4
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 6.5e-90 336.3 575 41.9
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 6.5e-90 336.3 572 42.7
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 6.5e-90 336.3 623 41.4
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 8.5e-90 335.9 598 41.6
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 1.1e-89 335.5 600 41.0
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 1.1e-89 335.5 598 41.1
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 1.5e-89 335.1 616 41.1
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 2.5e-89 334.3 598 42.6
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 2.5e-89 334.3 599 41.4
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 3.2e-89 334.0 598 41.1
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 3.2e-89 334.0 598 41.1
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 3.2e-89 334.0 600 41.5
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 4.2e-89 333.6 600 41.7
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 4.2e-89 333.6 600 41.7
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 5.5e-89 333.2 599 41.4
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 7.2e-89 332.8 602 41.7
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 9.4e-89 332.4 601 41.6
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 9.4e-89 332.4 603 41.5
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 1.6e-88 331.6 600 40.5
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 1.6e-88 331.6 598 41.1
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 1.6e-88 331.6 599 41.6
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 2.1e-88 331.3 575 42.8
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 2.7e-88 330.9 575 42.4
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 2.7e-88 330.9 591 41.6
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 2.7e-88 330.9 599 41.2
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 2.7e-88 330.9 600 41.7
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 6.1e-88 329.7 604 41.4
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 6.1e-88 329.7 598 42.5
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 6.1e-88 329.7 601 42.3
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 8.0e-88 329.3 603 42.1
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 8.0e-88 329.3 601 41.8
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 1.4e-87 328.6 603 41.1
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 1.4e-87 328.6 596 41.4
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.4e-87 328.6 604 41.1
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 1.4e-87 328.6 601 41.8
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 1.8e-87 328.2 603 40.6
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 1.8e-87 328.2 599 41.2
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.8e-87 328.2 601 41.1
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 1.8e-87 328.2 598 41.0
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 2.3e-87 327.8 599 41.2
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 2.3e-87 327.8 601 40.9
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 2.3e-87 327.8 600 40.8
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 3.0e-87 327.4 599 41.2
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 3.0e-87 327.4 601 40.3
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 3.0e-87 327.4 603 40.5
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 3.9e-87 327.0 599 41.4
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 3.9e-87 327.0 600 41.2
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 3.9e-87 327.0 608 41.4
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 5.2e-87 326.6 602 41.5
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 8.8e-87 325.9 603 40.5
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 1.1e-86 325.5 606 41.1
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.5e-86 325.1 596 40.9
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 1.5e-86 325.1 574 41.8
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 2.0e-86 324.7 598 40.6
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 2.6e-86 324.3 599 41.1
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 3.3e-86 323.9 604 41.2
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 3.3e-86 323.9 598 40.5
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 4.4e-86 323.6 603 41.1
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 5.7e-86 323.2 599 41.1
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 5.7e-86 323.2 597 40.7
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 5.7e-86 323.2 602 40.9
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 5.7e-86 323.2 604 40.9
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 1.7e-85 321.6 596 40.9
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 1.7e-85 321.6 600 40.7
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 1.7e-85 321.6 574 41.3
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 1.7e-85 321.6 598 41.1
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 2.2e-85 321.2 602 40.9
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 6.3e-85 319.7 603 40.6
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 8.2e-85 319.3 597 41.5
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 1.4e-84 318.5 580 41.0
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 1.8e-84 318.2 632 39.6
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 2.4e-84 317.8 608 40.3
Cre13.g607450 Chlamydomonas reinhardtii HOM05D003579 ORTHO05D004266 2.4e-84 317.8 648 42.7
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 3.1e-84 317.4 667 38.4
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 9.1e-84 315.8 596 40.3
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 1.6e-83 315.1 578 41.3
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 1.6e-83 315.1 600 40.7
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 2.0e-83 314.7 568 41.2
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 5.9e-83 313.2 575 39.8
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 2.9e-82 310.8 603 39.5
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 3.8e-82 310.5 604 41.1
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 3.8e-82 310.5 622 39.5
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 3.8e-82 310.5 603 41.1
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 5.0e-82 310.1 598 40.8
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 5.0e-82 310.1 594 40.6
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 6.5e-82 309.7 602 40.7
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 1.5e-81 308.5 587 40.0
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 1.4e-79 302.0 626 39.1
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 1.2e-78 298.9 478 42.7
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 3.4e-78 297.4 489 41.9
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 3.7e-77 293.9 596 40.1
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 3.7e-77 293.9 603 39.3
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 4.8e-77 293.5 595 38.8
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 8.3e-77 292.7 601 39.6
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 3.1e-76 290.8 529 40.3
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 7.7e-75 286.2 718 34.5
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 7.7e-75 286.2 599 39.1
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.0e-74 285.8 629 37.4
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 3.2e-73 280.8 597 38.2
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 7.2e-73 279.6 623 38.2
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 2.3e-71 274.6 649 36.5
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 5.2e-71 273.5 387 45.5
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 4.4e-70 270.4 523 40.7
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 1.7e-69 268.5 501 40.3
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 4.9e-69 266.9 577 37.8
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 8.3e-69 266.2 598 37.0
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 4.1e-68 263.8 488 40.6
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 5.4e-68 263.5 369 44.4
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 9.1e-68 262.7 561 37.3
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 3.5e-67 260.8 333 46.2
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 1.5e-65 255.4 597 36.3
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 2.1e-64 251.5 367 43.9
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 1.0e-63 249.2 625 36.6
Hund22318 Selenicereus undatus HOM05D003579 ORTHO05D004266 1.0e-50 206.1 271 47.6
Lj5g0002346 Lotus japonicus HOM05D003579 ORTHO05D004266 1.5e-49 202.2 392 38.5
Oeu023523.1 Olea europaea HOM05D003579 ORTHO05D004266 6.2e-48 196.8 225 52.0
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 1.1e-47 196.1 248 46.4
BraA05t21814Z Brassica rapa HOM05D003579 ORTHO05D004266 1.4e-47 195.7 276 46.7
C05p44830 Brassica napus HOM05D003579 ORTHO05D004266 3.6e-40 171.0 598 30.6
BraA05t21824Z Brassica rapa HOM05D003579 ORTHO05D004266 1.4e-39 169.1 206 51.9
Cfa023793 Carpinus fangiana HOM05D003579 ORTHO05D004266 2.4e-36 158.3 549 29.9
BcaB04g17424 Brassica carinata HOM05D003579 ORTHO05D004266 2.7e-35 154.8 274 40.9
vmacro17765 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 1.5e-33 149.1 163 54.6
SEGI_25290 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 2.8e-32 144.8 171 51.5
Hma1.2p1_0385F.1_g141530 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 9.9e-30 136.3 167 48.5
Hma1.2p1_1785F.1_g302226 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 9.9e-30 136.3 167 48.5
Hma1.2p1_0385F.1_g141540 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 1.7e-29 135.6 141 53.2
ClCG04G012780 Citrullus lanatus HOM05D003579 ORTHO05D004266 2.4e-28 131.7 113 59.3
BolC5t33210H Brassica oleracea HOM05D003579 ORTHO05D004266 3.2e-28 131.3 166 46.4
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 3.5e-27 127.9 332 37.0
SEGI_07046 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 1.5e-25 122.5 191 41.4
Oeu023525.2 Olea europaea HOM05D003579 ORTHO05D004266 5.8e-22 110.5 289 37.7
Lsat_1_v5_gn_1_111321 Lactuca sativa HOM05D003579 ORTHO05D004266 9.9e-22 109.8 130 49.2
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 7.9e-19 100.1 244 34.4
Hund22317 Selenicereus undatus HOM05D003579 ORTHO05D004266 5.3e-15 87.4 211 40.3
BcaB04g17425 Brassica carinata HOM05D003579 ORTHO05D004266 9.0e-15 86.7 285 33.3
Glyma.15G201250 Glycine max HOM05D003579 ORTHO05D004266 9.9e-14 83.2 147 37.4
QL10p037250 Quercus lobata HOM05D003579 ORTHO05D004266 2.4e-12 78.6 86 52.3
Gohir.D07G065501 Gossypium hirsutum HOM05D003579 ORTHO05D004266 3.2e-12 78.2 208 38.9
AUR62038598 Chenopodium quinoa HOM05D003579 ORTHO05D004266 1.2e-11 76.3 112 43.8
Eucgr.E02122 Eucalyptus grandis HOM05D003579 ORTHO05D004266 2.1e-11 75.5 59 66.1
arahy.Tifrunner.gnm1.ann1.SGC6ES Arachis hypogaea HOM05D003579 ORTHO05D004266 3.5e-11 74.7 267 33.7
BolC5t33211H Brassica oleracea HOM05D003579 ORTHO05D004266 6.7e-10 70.5 148 43.2
VMungo1383G3479 Vigna mungo HOM05D003579 ORTHO05D004266 6.7e-10 70.5 69 52.2
ClCG04G012770 Citrullus lanatus HOM05D003579 ORTHO05D004266 1.1e-09 69.7 87 46.0
Psat0s1042g0080 Pisum sativum HOM05D003579 ORTHO05D004266 1.1e-09 69.7 290 31.0
SEGI_32565 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 1.6e-08 65.9 179 36.3
ClCG04G012750 Citrullus lanatus HOM05D003579 ORTHO05D004266 2.8e-08 65.1 172 34.3
Lsat_1_v5_gn_7_12281 Lactuca sativa HOM05D003579 ORTHO05D004266 2.4e-07 62.0 81 46.9
QL10p037085 Quercus lobata HOM05D003579 ORTHO05D004266 4.0e-07 61.2 141 41.1
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 9.0e-07 60.1 61 44.3
BraA05t21815Z Brassica rapa HOM05D003579 ORTHO05D004266 1.2e-06 59.7 147 40.1
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 2.6e-06 58.5 106 38.7
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 2.6e-06 58.5 119 32.8
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 4.5e-06 57.8 111 37.8
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 4.5e-06 57.8 116 35.3
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 4.5e-06 57.8 116 35.3
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 4.5e-06 57.8 111 36.0
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 5.8e-06 57.4 64 46.9
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 5.8e-06 57.4 111 37.8
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 5.8e-06 57.4 111 36.0
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 5.8e-06 57.4 111 36.0
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 5.8e-06 57.4 71 45.1
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 7.6e-06 57.0 59 47.5
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 7.6e-06 57.0 111 36.0
Potri.011G011650 Populus trichocarpa HOM05D003579 ORTHO05D004266 7.6e-06 57.0 50 52.0
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 7.6e-06 57.0 111 35.1
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 1.0e-05 56.6 71 45.1


User provided reference genes

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