Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 2.0e-136 489.2 268 100.0
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 2.5e-70 269.6 220 68.6
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 3.3e-70 269.2 269 59.5
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.6e-69 266.9 270 57.8
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 2.8e-69 266.2 270 57.8
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 6.2e-69 265.0 270 57.0
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.8e-68 263.5 270 58.9
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.8e-68 263.5 270 56.7
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 2.4e-68 263.1 265 58.1
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 4.0e-68 262.3 269 58.4
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 5.3e-68 261.9 270 56.7
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 5.3e-68 261.9 270 56.7
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 5.3e-68 261.9 270 57.4
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 6.9e-68 261.5 270 57.8
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 6.9e-68 261.5 270 58.5
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 6.9e-68 261.5 270 58.1
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 9.0e-68 261.2 269 58.0
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.2e-67 260.8 270 56.7
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.2e-67 260.8 269 57.6
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.2e-67 260.8 270 57.8
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.2e-67 260.8 270 57.4
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 1.5e-67 260.4 270 56.7
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 1.5e-67 260.4 270 56.7
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.5e-67 260.4 270 56.7
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.5e-67 260.4 269 56.5
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 2.0e-67 260.0 270 57.4
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.0e-67 260.0 270 57.0
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.0e-67 260.0 270 57.0
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 2.0e-67 260.0 270 57.0
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 2.0e-67 260.0 270 57.4
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 2.0e-67 260.0 270 57.0
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.6e-67 259.6 269 57.6
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 2.6e-67 259.6 270 57.4
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 3.4e-67 259.2 269 57.2
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.4e-67 259.2 270 57.8
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 4.5e-67 258.8 268 55.6
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 4.5e-67 258.8 270 57.4
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 4.5e-67 258.8 270 57.8
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 5.8e-67 258.5 270 57.0
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 5.8e-67 258.5 274 56.9
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 5.8e-67 258.5 270 56.3
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 5.8e-67 258.5 269 55.8
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 5.8e-67 258.5 270 57.0
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 7.6e-67 258.1 270 57.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.0e-66 257.7 270 57.4
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.3e-66 257.3 270 57.0
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 1.3e-66 257.3 270 56.7
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.7e-66 256.9 270 55.9
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.7e-66 256.9 220 64.1
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 1.7e-66 256.9 271 55.7
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 2.2e-66 256.5 270 57.4
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 2.2e-66 256.5 225 64.0
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.2e-66 256.5 269 55.4
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 2.2e-66 256.5 270 56.3
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.9e-66 256.1 257 59.1
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 2.9e-66 256.1 270 55.9
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 2.9e-66 256.1 268 56.7
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 2.9e-66 256.1 268 56.7
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.9e-66 256.1 233 61.4
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 2.9e-66 256.1 225 64.0
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 3.8e-66 255.8 270 55.9
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.8e-66 255.8 271 55.7
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 3.8e-66 255.8 269 55.0
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 3.8e-66 255.8 269 56.1
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 6.5e-66 255.0 230 63.5
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 6.5e-66 255.0 270 56.3
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 6.5e-66 255.0 270 56.3
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 6.5e-66 255.0 269 55.0
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 6.5e-66 255.0 270 55.2
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 6.5e-66 255.0 220 64.5
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 8.4e-66 254.6 274 55.5
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 8.4e-66 254.6 274 55.5
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 1.1e-65 254.2 270 56.7
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 1.1e-65 254.2 234 62.0
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.1e-65 254.2 270 55.9
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.1e-65 254.2 270 56.3
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.1e-65 254.2 270 56.3
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.4e-65 253.8 211 66.4
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.9e-65 253.4 269 57.6
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.9e-65 253.4 270 57.4
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.9e-65 253.4 268 56.7
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.9e-65 253.4 270 57.0
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 2.5e-65 253.1 269 55.8
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.2e-65 252.7 270 55.6
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 3.2e-65 252.7 274 55.1
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 3.2e-65 252.7 270 56.3
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.2e-65 252.7 270 55.9
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.2e-65 252.7 274 54.7
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 3.2e-65 252.7 220 64.1
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 4.2e-65 252.3 270 55.6
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 5.5e-65 251.9 220 63.6
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 5.5e-65 251.9 271 56.1
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 9.3e-65 251.1 274 54.4
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 9.3e-65 251.1 270 56.3
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.2e-64 250.8 271 54.6
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 1.2e-64 250.8 270 55.9
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 1.6e-64 250.4 270 54.4
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.1e-64 250.0 227 63.0
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 2.1e-64 250.0 270 54.4
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.7e-64 249.6 263 55.9
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 2.7e-64 249.6 269 56.5
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 2.7e-64 249.6 270 55.2
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 4.6e-64 248.8 270 54.1
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 6.0e-64 248.4 270 55.6
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 6.0e-64 248.4 270 55.6
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 6.0e-64 248.4 270 55.2
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 6.0e-64 248.4 274 55.1
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 7.9e-64 248.1 270 55.6
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.3e-63 247.3 271 55.4
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 1.8e-63 246.9 275 54.9
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.8e-63 246.9 275 54.9
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.3e-63 246.5 274 54.4
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 3.0e-63 246.1 228 62.7
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 3.0e-63 246.1 234 60.3
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 3.0e-63 246.1 275 54.5
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 8.7e-63 244.6 238 59.2
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.1e-62 244.2 253 56.5
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 1.5e-62 243.8 253 56.1
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.9e-62 243.4 264 54.9
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.9e-62 243.4 264 54.9
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.9e-62 243.4 264 54.9
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.9e-62 243.4 220 61.8
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 4.3e-62 242.3 269 54.6
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 5.7e-62 241.9 270 53.7
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 5.7e-62 241.9 270 53.7
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 9.7e-62 241.1 270 53.3
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 9.7e-62 241.1 270 53.3
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 9.7e-62 241.1 270 53.3
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 9.7e-62 241.1 270 53.3
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 9.7e-62 241.1 263 55.1
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.3e-61 240.7 270 53.3
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.3e-61 240.7 270 53.3
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 1.3e-61 240.7 270 53.7
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.6e-61 240.4 239 58.6
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 2.2e-61 240.0 270 53.7
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 2.8e-61 239.6 270 52.6
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 3.7e-61 239.2 270 53.3
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 4.8e-61 238.8 270 53.3
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 8.2e-61 238.0 270 53.3
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 1.4e-60 237.3 270 53.0
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 1.4e-60 237.3 275 54.2
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 7.7e-59 231.5 255 54.9
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.0e-58 231.1 230 56.1
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.7e-58 230.3 204 63.2
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.8e-58 229.2 255 53.3
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.4e-57 227.3 210 61.0
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 3.2e-57 226.1 272 51.8
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.0e-54 216.9 214 58.9
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 3.7e-53 212.6 270 51.1
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.5e-51 207.2 270 50.0
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 9.7e-46 188.0 249 47.8
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 2.2e-45 186.8 249 46.2
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 6.3e-45 185.3 208 54.3
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 1.2e-43 181.0 264 45.8
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 9.4e-41 171.4 270 44.1
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 2.7e-40 169.9 247 45.3
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.1e-38 164.5 234 47.0
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.2e-33 146.4 255 40.8
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 6.8e-31 138.7 141 54.6
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 6.8e-31 138.7 230 43.0
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 3.4e-30 136.3 136 59.6
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 5.9e-27 125.6 111 59.5
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.8e-26 122.9 219 42.5
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 9.4e-25 118.2 123 59.3
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 5.7e-22 109.0 180 41.7
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.2e-16 91.3 126 46.0
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 4.1e-12 76.3 64 57.8
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 5.4e-12 75.9 102 51.0
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.0e-11 73.9 176 34.7


User provided reference genes

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