Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00004653 Prasinoderma coloniale HOM05D006056 ORTHO05D007136 4.0e-87 324.7 161 100.0
CBR_g51450 Chara braunii HOM05D006056 ORTHO05D007136 3.0e-18 95.9 110 44.5
Mapoly0006s0285 Marchantia polymorpha HOM05D006056 ORTHO05D007136 3.9e-18 95.5 128 41.4
AagrBONN_evm.TU.Sc2ySwM_117.3107 Anthoceros agrestis HOM05D006056 ORTHO05D007136 9.7e-17 90.9 109 41.3
Os08g0378900 Oryza sativa ssp. japonica HOM05D006056 ORTHO05D007136 1.4e-15 87.0 113 36.3
SMO146G0323 Selaginella moellendorffii HOM05D006056 ORTHO05D007136 1.8e-15 86.7 116 37.1
CDE05G0697 Ceratophyllum demersum HOM05D006056 ORTHO05D007136 3.1e-15 85.9 109 34.9
HPP92_023265 Vanilla planifolia HOM05D002937 ORTHO05D003063 4.1e-15 85.5 105 37.1
HPP92_023300 Vanilla planifolia HOM05D002937 ORTHO05D003063 4.1e-15 85.5 105 37.1
Gohir.D10G193500 Gossypium hirsutum HOM05D006056 ORTHO05D007136 9.1e-15 84.3 109 33.9
Gorai.011G216600 Gossypium raimondii HOM05D006056 ORTHO05D007136 9.1e-15 84.3 109 33.9
Rhsim07G0067800 Rhododendron simsii HOM05D006056 ORTHO05D007136 9.1e-15 84.3 109 36.7
MSTRG.16982 Avicennia marina HOM05D006056 ORTHO05D007136 1.5e-14 83.6 109 33.9
Migut.B01239 Erythranthe guttata HOM05D006056 ORTHO05D007136 1.5e-14 83.6 109 34.9
MCO07G215 Micromonas commoda HOM05D006056 ORTHO05D007136 1.5e-14 83.6 102 42.2
vmacro13759 Vaccinium macrocarpon HOM05D006056 ORTHO05D007136 2.0e-14 83.2 109 33.9
ATR0782G243 Amborella trichopoda HOM05D006056 ORTHO05D007136 2.6e-14 82.8 113 35.4
Cre02.g142800 Chlamydomonas reinhardtii HOM05D006056 ORTHO05D007136 2.6e-14 82.8 105 39.0
Lj3g0018945 Lotus japonicus HOM05D006056 ORTHO05D007136 2.6e-14 82.8 109 33.9
Pp3c1_18440 Physcomitrium patens HOM05D006056 ORTHO05D007136 2.6e-14 82.8 111 33.3
Phvul.005G025600 Phaseolus vulgaris HOM05D006056 ORTHO05D007136 3.4e-14 82.4 109 33.0
MBI13_g23031_MAGBIO Magnolia biondii HOM05D006056 ORTHO05D007136 4.5e-14 82.0 109 32.1
Nitab4.5_0003481g0070 Nicotiana tabacum HOM05D006056 ORTHO05D007136 4.5e-14 82.0 109 33.9
Peaxi162Scf00082g00120 Petunia axillaris HOM05D006056 ORTHO05D007136 4.5e-14 82.0 109 34.9
Solyc01g096480.2 Solanum lycopersicum HOM05D006056 ORTHO05D007136 4.5e-14 82.0 109 33.9
Sopen01g040210 Solanum pennellii HOM05D006056 ORTHO05D007136 4.5e-14 82.0 109 33.9
PGSC0003DMG400005407 Solanum tuberosum HOM05D006056 ORTHO05D007136 4.5e-14 82.0 109 33.9
Thecc.10G150600 Theobroma cacao HOM05D006056 ORTHO05D007136 4.5e-14 82.0 109 33.0
Glyma.04G135300 Glycine max HOM05D006056 ORTHO05D007136 5.9e-14 81.6 109 33.9
Lalb_Chr01g0014891 Lupinus albus HOM05D006056 ORTHO05D007136 5.9e-14 81.6 109 33.0
Nitab4.5_0005808g0070 Nicotiana tabacum HOM05D006056 ORTHO05D007136 5.9e-14 81.6 109 33.9
PSO339G3509 Papaver somniferum HOM05D006056 ORTHO05D007136 5.9e-14 81.6 109 31.2
arahy.Tifrunner.gnm1.ann1.6DS776 Arachis hypogaea HOM05D006056 ORTHO05D007136 1.0e-13 80.9 109 33.0
arahy.Tifrunner.gnm1.ann1.X1BBAM Arachis hypogaea HOM05D006056 ORTHO05D007136 1.0e-13 80.9 109 33.0
CAN.G1045.19 Capsicum annuum HOM05D006056 ORTHO05D007136 1.0e-13 80.9 109 33.9
Duzib106G1601 Durio zibethinus HOM05D006056 ORTHO05D007136 1.0e-13 80.9 106 33.0
Nn2g14790 Nelumbo nucifera HOM05D006056 ORTHO05D007136 1.0e-13 80.9 109 32.1
Hund13373 Selenicereus undatus HOM05D006056 ORTHO05D007136 1.0e-13 80.9 109 33.0
SGA_v2.0_scaffold124G33607 Striga asiatica HOM05D006056 ORTHO05D007136 1.0e-13 80.9 109 33.0
BraA01t04419Z Brassica rapa HOM05D006056 ORTHO05D007136 1.3e-13 80.5 109 32.1
Duzib106G1426 Durio zibethinus HOM05D006056 ORTHO05D007136 1.3e-13 80.5 106 33.0
Glyma.11G156500 Glycine max HOM05D006056 ORTHO05D007136 1.3e-13 80.5 109 33.0
Lsat_1_v5_gn_9_40260 Lactuca sativa HOM05D006056 ORTHO05D007136 1.3e-13 80.5 109 33.0
Lalb_Chr04g0264131 Lupinus albus HOM05D006056 ORTHO05D007136 1.3e-13 80.5 109 33.0
unitig_736.g22224 Utricularia gibba HOM05D006056 ORTHO05D007136 1.3e-13 80.5 109 33.0
BcaC05g30553 Brassica carinata HOM05D006056 ORTHO05D007136 1.7e-13 80.1 109 32.1
Cpa.g.sc2293.2 Carica papaya HOM05D006056 ORTHO05D007136 1.7e-13 80.1 109 33.0
Duzib114G0422 Durio zibethinus HOM05D006056 ORTHO05D007136 2.2e-13 79.7 109 32.1
Gohir.A10G186600 Gossypium hirsutum HOM05D006056 ORTHO05D007136 2.2e-13 79.7 88 36.4
Potri.001G028500 Populus trichocarpa HOM05D006056 ORTHO05D007136 2.2e-13 79.7 109 32.1
QL04p017566 Quercus lobata HOM05D006056 ORTHO05D007136 2.2e-13 79.7 109 31.2
Sp3g05700 Schrenkiella parvula HOM05D006056 ORTHO05D007136 2.2e-13 79.7 109 32.1
Actinidia06230 Actinidia chinensis HOM05D006056 ORTHO05D007136 2.9e-13 79.3 98 35.7
EL10Ac2g02787 Beta vulgaris HOM05D006056 ORTHO05D007136 2.9e-13 79.3 108 32.4
A05p41340 Brassica napus HOM05D006056 ORTHO05D007136 2.9e-13 79.3 109 32.1
BolC5t34710H Brassica oleracea HOM05D006056 ORTHO05D007136 2.9e-13 79.3 109 32.1
BraA05t22856Z Brassica rapa HOM05D006056 ORTHO05D007136 2.9e-13 79.3 109 32.1
TPR.G1448 Trifolium pratense HOM05D006056 ORTHO05D007136 2.9e-13 79.3 109 32.1
BNapus_Darmor_BZH_scaffold_117p00040 Brassica napus HOM05D006056 ORTHO05D007136 3.8e-13 79.0 109 31.2
Carub.0003s0627 Capsella rubella HOM05D006056 ORTHO05D007136 3.8e-13 79.0 109 31.2
Cc08_g11260 Coffea canephora HOM05D006056 ORTHO05D007136 3.8e-13 79.0 109 32.1
Dinv44692 Davidia involucrata HOM05D006056 ORTHO05D007136 3.8e-13 79.0 109 32.1
Duzib106G0937 Durio zibethinus HOM05D006056 ORTHO05D007136 3.8e-13 79.0 106 33.0
Eucgr.G03224 Eucalyptus grandis HOM05D006056 ORTHO05D007136 3.8e-13 79.0 109 32.1
PSO384G1577 Papaver somniferum HOM05D006056 ORTHO05D007136 3.8e-13 79.0 109 30.3
PGR044G1154 Punica granatum HOM05D006056 ORTHO05D007136 3.8e-13 79.0 109 32.1
Actinidia10152 Actinidia chinensis HOM05D006056 ORTHO05D007136 5.0e-13 78.6 98 35.7
CSS0027846 Camellia sinensis var. sinensis HOM05D006056 ORTHO05D007136 5.0e-13 78.6 98 35.7
CARHR081330 Cardamine hirsuta HOM05D006056 ORTHO05D007136 5.0e-13 78.6 107 31.8
Ca_12968_v3 Cicer arietinum L. HOM05D006056 ORTHO05D007136 5.0e-13 78.6 109 31.2
HanXRQChr11g0341201 Helianthus annuus HOM05D006056 ORTHO05D007136 5.0e-13 78.6 98 37.8
Medtr1g037680 Medicago truncatula HOM05D006056 ORTHO05D007136 5.0e-13 78.6 107 30.8
Aa31LG5G17320 Aethionema arabicum HOM05D006056 ORTHO05D007136 6.5e-13 78.2 109 31.2
BcaC09g47915 Brassica carinata HOM05D006056 ORTHO05D007136 6.5e-13 78.2 109 31.2
Psat5g221760 Pisum sativum HOM05D006056 ORTHO05D007136 6.5e-13 78.2 109 31.2
Prupe.2G039200 Prunus persica HOM05D006056 ORTHO05D007136 6.5e-13 78.2 109 31.2
TWI38G2317 Tripterygium wilfordii HOM05D006056 ORTHO05D007136 6.5e-13 78.2 109 31.2
GSVIVG01036664001 Vitis vinifera HOM05D006056 ORTHO05D007136 6.5e-13 78.2 109 32.1
Aqoxy1G00370 Aquilegia oxysepala HOM05D006056 ORTHO05D007136 8.5e-13 77.8 87 35.6
BolC1t05590H Brassica oleracea HOM05D006056 ORTHO05D007136 8.5e-13 77.8 109 31.2
Ciclev10002629m.g Citrus clementina HOM05D006056 ORTHO05D007136 8.5e-13 77.8 109 30.3
Haze_03016 Corylus avellana HOM05D006056 ORTHO05D007136 8.5e-13 77.8 109 31.2
Haze_03023 Corylus avellana HOM05D006056 ORTHO05D007136 8.5e-13 77.8 109 31.2
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 8.5e-13 77.8 107 36.4
MD02G1283300 Malus domestica HOM05D006056 ORTHO05D007136 8.5e-13 77.8 109 29.4
AL3G17840 Arabidopsis lyrata HOM05D006056 ORTHO05D007136 1.1e-12 77.4 109 31.2
AT3G06730 Arabidopsis thaliana HOM05D006056 ORTHO05D007136 1.1e-12 77.4 109 31.2
C05p60560 Brassica napus HOM05D006056 ORTHO05D007136 1.1e-12 77.4 109 31.2
Thhalv10021607m.g Eutrema salsugineum HOM05D006056 ORTHO05D007136 1.1e-12 77.4 109 31.2
Lj9A658G61 Lonicera japonica HOM05D006056 ORTHO05D007136 1.1e-12 77.4 88 35.2
THA.LOC104826732 Tarenaya hassleriana HOM05D006056 ORTHO05D007136 1.1e-12 77.4 109 31.2
FAN01G1581 Fragaria x ananassa HOM05D006056 ORTHO05D007136 1.4e-12 77.0 109 30.3
FAN10G2490 Fragaria x ananassa HOM05D006056 ORTHO05D007136 1.4e-12 77.0 109 29.4
Hma1.2p1_0837F.1_g226040 Hydrangea macrophylla HOM05D006056 ORTHO05D007136 1.4e-12 77.0 109 31.2
Manes.04G158100 Manihot esculenta HOM05D006056 ORTHO05D007136 1.4e-12 77.0 109 31.2
Nn7g36738 Nelumbo nucifera HOM05D006056 ORTHO05D007136 1.4e-12 77.0 88 35.2
Sed0016890 Sechium edule HOM05D006056 ORTHO05D007136 1.4e-12 77.0 109 29.4
CANSAT56G1604 Cannabis sativa HOM05D006056 ORTHO05D007136 2.5e-12 76.3 109 31.2
CiPaw.13G014800 Carya illinoinensis HOM05D006056 ORTHO05D007136 2.5e-12 76.3 109 31.2
FAN03G2563 Fragaria x ananassa HOM05D006056 ORTHO05D007136 2.5e-12 76.3 109 29.4
Atru.chr12.1257 Acer truncatum HOM05D006056 ORTHO05D007136 3.2e-12 75.9 88 34.1
ClCG08G010680 Citrullus lanatus HOM05D006056 ORTHO05D007136 3.2e-12 75.9 109 29.4
CsaV3_6G035850 Cucumis sativus L. HOM05D006056 ORTHO05D007136 4.2e-12 75.5 109 29.4
MD07G1048800 Malus domestica HOM05D006056 ORTHO05D007136 4.2e-12 75.5 109 27.5
RcHm_v2.0_Chr1g0325731 Rosa chinensis HOM05D006056 ORTHO05D007136 4.2e-12 75.5 109 29.4
FvH4_7g03410 Fragaria vesca HOM05D006056 ORTHO05D007136 1.2e-11 73.9 109 28.4
CiPaw.14G008500 Carya illinoinensis HOM05D006056 ORTHO05D007136 2.1e-11 73.2 88 34.1
FAN06G0497 Fragaria x ananassa HOM05D006056 ORTHO05D007136 2.7e-11 72.8 98 31.6
MELO3C011393.2 Cucumis melo HOM05D006056 ORTHO05D007136 1.4e-10 70.5 90 32.2
DCAR_031839 Daucus carota HOM05D006056 ORTHO05D007136 2.6e-09 66.2 131 26.7
Aqoxy5G00856 Aquilegia oxysepala HOM05D000803 ORTHO05D007008 1.7e-08 63.5 92 33.7
MCO13G056 Micromonas commoda HOM05D000803 ORTHO05D268570 4.8e-08 62.0 91 40.7
vmacro12407 Vaccinium macrocarpon HOM05D000803 ORTHO05D007008 8.2e-08 61.2 97 30.9
Aa31LG6G9940 Aethionema arabicum HOM05D006715 ORTHO05D008345 2.4e-07 59.7 106 31.1
MCO13G136 Micromonas commoda HOM05D000803 ORTHO05D007008 3.1e-07 59.3 103 35.0
HanXRQChr11g0320301 Helianthus annuus HOM05D000803 ORTHO05D007008 5.3e-07 58.5 85 28.2
Lsat_1_v5_gn_9_41160 Lactuca sativa HOM05D000803 ORTHO05D007008 5.3e-07 58.5 85 30.6
arahy.Tifrunner.gnm1.ann1.7N4CEX Arachis hypogaea HOM05D000803 ORTHO05D009288 7.0e-07 58.2 105 27.6
FAN22G0075 Fragaria x ananassa HOM05D000803 ORTHO05D009288 9.1e-07 57.8 120 25.0
Gohir.A04G109000 Gossypium hirsutum HOM05D000803 ORTHO05D009288 9.1e-07 57.8 119 24.4
Os01g0963400 Oryza sativa ssp. japonica HOM05D000803 ORTHO05D007008 9.1e-07 57.8 94 31.9
Ah.05g169330 Amaranthus hybridus HOM05D000803 ORTHO05D001162 1.2e-06 57.4 90 28.9
Lsat_1_v5_gn_9_96840 Lactuca sativa HOM05D000803 ORTHO05D001162 1.2e-06 57.4 88 28.4
PSO675G7586 Papaver somniferum HOM05D000803 ORTHO05D007008 1.2e-06 57.4 85 30.6
Phvul.007G015500 Phaseolus vulgaris HOM05D000803 ORTHO05D009288 1.2e-06 57.4 111 27.0
Hund17447 Selenicereus undatus HOM05D000803 ORTHO05D007008 1.2e-06 57.4 85 30.6
Ca_10681_v3 Cicer arietinum L. HOM05D000803 ORTHO05D007008 1.6e-06 57.0 85 31.8
COL.COLO4_29854 Corchorus olitorius HOM05D000803 ORTHO05D007008 1.6e-06 57.0 90 30.0
Nitab4.5_0001551g0090 Nicotiana tabacum HOM05D000803 ORTHO05D001162 1.6e-06 57.0 109 28.4
Nitab4.5_0003688g0090 Nicotiana tabacum HOM05D000803 ORTHO05D001162 1.6e-06 57.0 109 28.4
Sp1g32430 Schrenkiella parvula HOM05D000803 ORTHO05D007008 1.6e-06 57.0 85 32.9
AL1G51610 Arabidopsis lyrata HOM05D000803 ORTHO05D007008 2.0e-06 56.6 85 32.9
EL10Ac1g01445 Beta vulgaris HOM05D000803 ORTHO05D001162 2.0e-06 56.6 87 29.9
BcaB07g33985 Brassica carinata HOM05D000803 ORTHO05D007008 2.0e-06 56.6 85 31.8
CAN.G162.65 Capsicum annuum HOM05D000803 ORTHO05D001162 2.0e-06 56.6 112 28.6
Thhalv10005020m.g Eutrema salsugineum HOM05D000803 ORTHO05D007008 2.0e-06 56.6 85 32.9
Lj5g0005958 Lotus japonicus HOM05D000803 ORTHO05D009288 2.0e-06 56.6 132 25.0
Prupe.8G033500 Prunus persica HOM05D000803 ORTHO05D007008 2.0e-06 56.6 86 32.6
Atru.chr13.2085 Acer truncatum HOM05D000803 ORTHO05D007008 2.6e-06 56.2 86 30.2
Carub.0001s3456 Capsella rubella HOM05D000803 ORTHO05D007008 2.6e-06 56.2 85 31.8
CARHR035380 Cardamine hirsuta HOM05D000803 ORTHO05D007008 2.6e-06 56.2 85 31.8
Gohir.D04G148500 Gossypium hirsutum HOM05D000803 ORTHO05D009288 2.6e-06 56.2 119 23.5
Gorai.012G134800 Gossypium raimondii HOM05D000803 ORTHO05D009288 2.6e-06 56.2 119 23.5
PSO541G3025 Papaver somniferum HOM05D000803 ORTHO05D007008 2.6e-06 56.2 82 31.7
PSO734G0001 Papaver somniferum HOM05D000803 ORTHO05D007008 2.6e-06 56.2 82 31.7
Atru.chr11.1152 Acer truncatum HOM05D000803 ORTHO05D009288 3.5e-06 55.8 118 24.6
MELO3C025023.2 Cucumis melo HOM05D000803 ORTHO05D007008 3.5e-06 55.8 86 31.4
Manes.18G093000 Manihot esculenta HOM05D000803 ORTHO05D007008 3.5e-06 55.8 85 30.6
Sc10g0004470 Simmondsia chinensis HOM05D006056 ORTHO05D007136 3.5e-06 55.8 72 37.5
TWI60G0648 Tripterygium wilfordii HOM05D000803 ORTHO05D007008 3.5e-06 55.8 85 30.6
unitig_749.g13915 Utricularia gibba HOM05D000803 ORTHO05D007008 3.5e-06 55.8 90 32.2
AT1G43560 Arabidopsis thaliana HOM05D000803 ORTHO05D007008 4.5e-06 55.5 85 31.8
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 4.5e-06 55.5 113 24.8
DCAR_010094 Daucus carota HOM05D000803 ORTHO05D007008 4.5e-06 55.5 85 30.6
ECA232G0506 Erigeron canadensis HOM05D000803 ORTHO05D007008 4.5e-06 55.5 82 30.5
FvH4_2g13460 Fragaria vesca HOM05D000803 ORTHO05D007008 4.5e-06 55.5 86 32.6
FAN15G1904 Fragaria x ananassa HOM05D000803 ORTHO05D007008 4.5e-06 55.5 86 32.6
FAN24G3234 Fragaria x ananassa HOM05D000803 ORTHO05D007008 4.5e-06 55.5 86 32.6
FAN27G3502 Fragaria x ananassa HOM05D000803 ORTHO05D007008 4.5e-06 55.5 86 32.6
PRCOL_00000229 Prasinoderma coloniale HOM05D000803 ORTHO05D007008 4.5e-06 55.5 84 31.0
PRCOL_00003692 Prasinoderma coloniale HOM05D000247 ORTHO05D000288 4.5e-06 55.5 85 36.5
SalBow7G0702 Salvia bowleyana HOM05D000803 ORTHO05D001162 4.5e-06 55.5 88 30.7
Sed0014094 Sechium edule HOM05D000803 ORTHO05D007008 4.5e-06 55.5 86 30.2
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 4.5e-06 55.5 89 28.1
VMungo0720G1024 Vigna mungo HOM05D000803 ORTHO05D009288 4.5e-06 55.5 116 25.0
arahy.Tifrunner.gnm1.ann1.6P83Q0 Arachis hypogaea HOM05D000803 ORTHO05D001162 5.9e-06 55.1 58 37.9
arahy.Tifrunner.gnm1.ann1.H7T9WE Arachis hypogaea HOM05D000803 ORTHO05D001162 5.9e-06 55.1 58 37.9
CSS0028056 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D007008 5.9e-06 55.1 95 30.5
CiPaw.05G170800 Carya illinoinensis HOM05D000803 ORTHO05D009288 5.9e-06 55.1 75 30.7
Cre06.g282651 Chlamydomonas reinhardtii HOM05D006056 ORTHO05D144923 5.9e-06 55.1 171 25.1
Migut.M00815 Erythranthe guttata HOM05D000803 ORTHO05D001162 5.9e-06 55.1 87 26.4
THA.LOC104809204 Tarenaya hassleriana HOM05D000803 ORTHO05D007008 5.9e-06 55.1 86 32.6
vmacro14438 Vaccinium macrocarpon HOM05D000847 ORTHO05D003278 5.9e-06 55.1 86 33.7
HPP92_018826 Vanilla planifolia HOM05D000247 ORTHO05D000288 5.9e-06 55.1 91 35.2
Zm00001eb140270 Zea mays HOM05D000803 ORTHO05D007008 5.9e-06 55.1 85 31.8
MD10G1028500 Malus domestica HOM05D000803 ORTHO05D007008 7.7e-06 54.7 86 31.4
RcHm_v2.0_Chr6g0275081 Rosa chinensis HOM05D000803 ORTHO05D007008 7.7e-06 54.7 85 31.8
SGA_v2.0_scaffold73G24271 Striga asiatica HOM05D000803 ORTHO05D001162 7.7e-06 54.7 87 27.6
TWI32G0734 Tripterygium wilfordii HOM05D000803 ORTHO05D007008 7.7e-06 54.7 86 30.2


User provided reference genes

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