Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00004511 Prasinoderma coloniale HOM05D002382 ORTHO05D002622 4.6e-65 251.1 131 100.0
Mapoly0002s0184 Marchantia polymorpha HOM05D002382 ORTHO05D002622 2.6e-12 75.9 134 38.1
AagrBONN_evm.TU.Sc2ySwM_117.1755 Anthoceros agrestis HOM05D002382 ORTHO05D002622 1.7e-11 73.2 134 37.3
Peaxi162Scf00038g01242 Petunia axillaris HOM05D002382 ORTHO05D002622 1.4e-10 70.1 129 40.3
Nitab4.5_0006071g0060 Nicotiana tabacum HOM05D002382 ORTHO05D002622 2.5e-10 69.3 129 38.8
Sopen12g022910 Solanum pennellii HOM05D002382 ORTHO05D002622 2.5e-10 69.3 129 38.8
PGSC0003DMG400004838 Solanum tuberosum HOM05D002382 ORTHO05D002622 2.5e-10 69.3 129 38.8
Nitab4.5_0004848g0090 Nicotiana tabacum HOM05D002382 ORTHO05D002622 3.2e-10 68.9 129 38.8
CAN.G1668.5 Capsicum annuum HOM05D002382 ORTHO05D002622 5.5e-10 68.2 129 38.0
Sopen06g021980 Solanum pennellii HOM05D002382 ORTHO05D002622 5.5e-10 68.2 129 38.8
Peaxi162Scf00207g01137 Petunia axillaris HOM05D002382 ORTHO05D002622 7.2e-10 67.8 129 37.2
Pp3c17_14060 Physcomitrium patens HOM05D002382 ORTHO05D002622 7.2e-10 67.8 131 37.4
Solyc12g044720.2 Solanum lycopersicum HOM05D002382 ORTHO05D002622 7.2e-10 67.8 129 38.0
PGSC0003DMG400002597 Solanum tuberosum HOM05D002382 ORTHO05D002622 7.2e-10 67.8 129 38.0
Nitab4.5_0002656g0040 Nicotiana tabacum HOM05D002382 ORTHO05D002622 1.2e-09 67.0 129 37.2
Zm00001eb342400 Zea mays HOM05D002382 ORTHO05D002622 1.2e-09 67.0 131 36.6
Solyc03g121330.3 Solanum lycopersicum HOM05D002382 ORTHO05D002622 2.1e-09 66.2 129 37.2
CAN.G635.28 Capsicum annuum HOM05D002382 ORTHO05D002622 2.7e-09 65.9 129 38.0
MD09G1196500 Malus domestica HOM05D002382 ORTHO05D002622 2.7e-09 65.9 129 37.2
Sopen03g040140 Solanum pennellii HOM05D002382 ORTHO05D002622 2.7e-09 65.9 129 37.2
CAN.G730.52 Capsicum annuum HOM05D002382 ORTHO05D002622 4.6e-09 65.1 129 37.2
Sc12g0009920 Simmondsia chinensis HOM05D002382 ORTHO05D002622 4.6e-09 65.1 128 37.5
Lalb_Chr25g0280551 Lupinus albus HOM05D002382 ORTHO05D002622 6.1e-09 64.7 129 37.2
Pp3c1_29070 Physcomitrium patens HOM05D002382 ORTHO05D002622 6.1e-09 64.7 131 36.6
Pp3c2_6100 Physcomitrium patens HOM05D002382 ORTHO05D002622 7.9e-09 64.3 131 36.6
Hund07661 Selenicereus undatus HOM05D002382 ORTHO05D002622 1.0e-08 63.9 128 35.2
Sc12g0009930 Simmondsia chinensis HOM05D002382 ORTHO05D002622 1.0e-08 63.9 128 36.7
Lalb_Chr04g0263131 Lupinus albus HOM05D002382 ORTHO05D002622 2.3e-08 62.8 129 37.2
Psat4g194560 Pisum sativum HOM05D002382 ORTHO05D002622 2.3e-08 62.8 129 38.0
SMO367G0745 Selaginella moellendorffii HOM05D002382 ORTHO05D002622 2.3e-08 62.8 128 33.6
MCO02G063 Micromonas commoda HOM05D002382 ORTHO05D002622 3.0e-08 62.4 131 34.4
MD02G1072800 Malus domestica HOM05D002382 ORTHO05D002622 3.9e-08 62.0 129 36.4
Os01g0706500 Oryza sativa ssp. japonica HOM05D002382 ORTHO05D002622 3.9e-08 62.0 133 36.8
Sed0009368 Sechium edule HOM05D002382 ORTHO05D002622 3.9e-08 62.0 129 35.7
unitig_52.g17210 Utricularia gibba HOM05D002382 ORTHO05D002622 3.9e-08 62.0 128 34.4
Hund00740 Selenicereus undatus HOM05D002382 ORTHO05D002622 5.1e-08 61.6 128 35.9
SGA_v2.0_scaffold68G22936 Striga asiatica HOM05D002382 ORTHO05D002622 5.1e-08 61.6 128 35.2
Prupe.3G052900 Prunus persica HOM05D002382 ORTHO05D002622 6.7e-08 61.2 129 35.7
Medtr2g100410 Medicago truncatula HOM05D002382 ORTHO05D002622 8.7e-08 60.8 129 35.7
Aqoxy7G01309 Aquilegia oxysepala HOM05D002382 ORTHO05D002622 1.1e-07 60.5 129 35.7
TPR.G6567 Trifolium pratense HOM05D002382 ORTHO05D002622 1.1e-07 60.5 129 34.9
Gohir.A10G062300 Gossypium hirsutum HOM05D002382 ORTHO05D002622 1.5e-07 60.1 129 35.7
Gorai.N005300 Gossypium raimondii HOM05D002382 ORTHO05D002622 1.5e-07 60.1 134 35.1
THA.LOC104810559 Tarenaya hassleriana HOM05D002382 ORTHO05D002622 1.5e-07 60.1 129 34.9
unitig_699.g19780 Utricularia gibba HOM05D002382 ORTHO05D002622 1.5e-07 60.1 128 35.2
Ca_01182_v3 Cicer arietinum L. HOM05D002382 ORTHO05D002622 2.5e-07 59.3 130 34.6
COL.COLO4_30601 Corchorus olitorius HOM05D002382 ORTHO05D002622 2.5e-07 59.3 129 35.7
Lsat_1_v5_gn_4_96020 Lactuca sativa HOM05D002382 ORTHO05D002622 2.5e-07 59.3 129 33.3
Glyma.15G022700 Glycine max HOM05D002382 ORTHO05D002622 3.3e-07 58.9 129 34.9
Thecc.06G107400 Theobroma cacao HOM05D002382 ORTHO05D002622 3.3e-07 58.9 129 34.9
AT2G19730 Arabidopsis thaliana HOM05D002382 ORTHO05D002622 4.3e-07 58.5 129 34.9
Glyma.07G012800 Glycine max HOM05D002382 ORTHO05D002622 4.3e-07 58.5 129 35.7
Glyma.08G196500 Glycine max HOM05D002382 ORTHO05D002622 4.3e-07 58.5 129 35.7
Sed0016574 Sechium edule HOM05D002382 ORTHO05D002622 4.3e-07 58.5 129 34.1
Carub.0003s3401 Capsella rubella HOM05D002382 ORTHO05D002622 5.7e-07 58.2 129 34.9
AUR62038339 Chenopodium quinoa HOM05D002382 ORTHO05D002622 5.7e-07 58.2 128 34.4
MELO3C013029.2 Cucumis melo HOM05D002382 ORTHO05D002622 5.7e-07 58.2 129 33.3
Glyma.13G352100 Glycine max HOM05D002382 ORTHO05D002622 5.7e-07 58.2 129 34.1
TPR.G8748 Trifolium pratense HOM05D002382 ORTHO05D002622 5.7e-07 58.2 128 35.2
Zm00001eb294420 Zea mays HOM05D002382 ORTHO05D002622 5.7e-07 58.2 100 41.0
AUR62023907 Chenopodium quinoa HOM05D002382 ORTHO05D002622 7.4e-07 57.8 128 34.4
Gorai.009G139200 Gossypium raimondii HOM05D002382 ORTHO05D002622 7.4e-07 57.8 129 34.9
Cre11.g467578 Chlamydomonas reinhardtii HOM05D002382 ORTHO05D002622 9.7e-07 57.4 131 35.1
Gohir.A05G133500 Gossypium hirsutum HOM05D002382 ORTHO05D002622 9.7e-07 57.4 129 34.9
Gohir.A06G190300 Gossypium hirsutum HOM05D002382 ORTHO05D002622 9.7e-07 57.4 129 34.9
Gohir.D06G198700 Gossypium hirsutum HOM05D002382 ORTHO05D002622 9.7e-07 57.4 129 34.9
Gorai.010G231600 Gossypium raimondii HOM05D002382 ORTHO05D002622 9.7e-07 57.4 129 34.9
TAR626G1326 Trochodendron aralioides HOM05D002382 ORTHO05D002622 9.7e-07 57.4 129 34.1
AL3G48510 Arabidopsis lyrata HOM05D002382 ORTHO05D002622 1.3e-06 57.0 129 34.1
ClCG11G001860 Citrullus lanatus HOM05D002382 ORTHO05D002622 1.3e-06 57.0 129 34.9
Gohir.D10G064000 Gossypium hirsutum HOM05D002382 ORTHO05D002622 1.3e-06 57.0 129 34.9
Gorai.011G067900 Gossypium raimondii HOM05D002382 ORTHO05D002622 1.3e-06 57.0 129 34.9
Atru.chr1.3626 Acer truncatum HOM05D002382 ORTHO05D002622 1.6e-06 56.6 128 35.2
MSTRG.11006 Avicennia marina HOM05D002382 ORTHO05D002622 1.6e-06 56.6 128 33.6
Manes.04G137300 Manihot esculenta HOM05D002382 ORTHO05D002622 1.6e-06 56.6 128 35.2
arahy.Tifrunner.gnm1.ann1.D10BJJ Arachis hypogaea HOM05D002382 ORTHO05D002622 2.2e-06 56.2 129 35.7
arahy.Tifrunner.gnm1.ann1.SZ1DHP Arachis hypogaea HOM05D002382 ORTHO05D002622 2.2e-06 56.2 129 35.7
Duzib160G0391 Durio zibethinus HOM05D002382 ORTHO05D002622 2.2e-06 56.2 129 34.9
ATR0789G113 Amborella trichopoda HOM05D002382 ORTHO05D002622 2.8e-06 55.8 129 33.3
CARHR110180 Cardamine hirsuta HOM05D002382 ORTHO05D002622 2.8e-06 55.8 129 34.9
Duzib192G0237 Durio zibethinus HOM05D002382 ORTHO05D002622 2.8e-06 55.8 129 34.1
Lj3g0026331 Lotus japonicus HOM05D002382 ORTHO05D002622 3.7e-06 55.5 132 34.8
Actinidia09018 Actinidia chinensis HOM05D002382 ORTHO05D002622 4.8e-06 55.1 129 32.6
Ca_23292_v3 Cicer arietinum L. HOM05D002382 ORTHO05D002622 4.8e-06 55.1 129 34.1
Duzib235G0971 Durio zibethinus HOM05D002382 ORTHO05D002622 4.8e-06 55.1 129 34.1
THA.LOC104817939 Tarenaya hassleriana HOM05D002382 ORTHO05D002622 4.8e-06 55.1 129 32.6
Cfa003609 Carpinus fangiana HOM05D002382 ORTHO05D002622 6.3e-06 54.7 129 34.1
SalBow6G3009 Salvia bowleyana HOM05D002382 ORTHO05D002622 6.3e-06 54.7 128 32.0
SGA_v2.0_scaffold71G23754 Striga asiatica HOM05D002382 ORTHO05D002622 6.3e-06 54.7 128 32.0
EL10Ac9g21134 Beta vulgaris HOM05D002382 ORTHO05D002622 8.2e-06 54.3 128 32.0
TWI63G1268 Tripterygium wilfordii HOM05D002382 ORTHO05D002622 8.2e-06 54.3 130 33.8


User provided reference genes

Program Settings