Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 2.1e-147 525.8 281 100.0
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 1.8e-63 246.9 295 45.8
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 4.1e-63 245.7 304 44.7
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 4.1e-63 245.7 305 44.3
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 9.2e-63 244.6 299 44.8
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.2e-62 244.2 298 44.6
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 1.6e-62 243.8 299 45.2
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 1.6e-62 243.8 292 49.0
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 2.0e-62 243.4 296 45.6
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 2.0e-62 243.4 301 46.2
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 3.5e-62 242.7 297 45.8
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 3.5e-62 242.7 300 47.0
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 3.5e-62 242.7 300 45.3
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 3.5e-62 242.7 303 44.9
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 3.5e-62 242.7 301 52.2
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 4.5e-62 242.3 296 47.3
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 4.5e-62 242.3 305 46.2
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 5.9e-62 241.9 299 44.8
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 5.9e-62 241.9 303 44.6
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 5.9e-62 241.9 298 44.6
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 5.9e-62 241.9 300 44.7
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 5.9e-62 241.9 299 44.1
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 7.8e-62 241.5 307 44.3
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 7.8e-62 241.5 299 43.8
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 7.8e-62 241.5 300 43.7
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 7.8e-62 241.5 304 44.7
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 1.0e-61 241.1 300 44.7
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 1.0e-61 241.1 297 44.8
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 1.0e-61 241.1 300 43.3
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 1.3e-61 240.7 299 44.1
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 1.3e-61 240.7 297 44.8
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 1.3e-61 240.7 299 44.5
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 2.3e-61 240.0 293 48.5
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 2.3e-61 240.0 299 44.5
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 2.3e-61 240.0 300 43.0
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 2.3e-61 240.0 300 43.0
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.3e-61 240.0 291 45.4
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 2.3e-61 240.0 300 43.7
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.9e-61 239.6 299 42.8
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 3.8e-61 239.2 296 51.0
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 3.8e-61 239.2 280 48.2
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 3.8e-61 239.2 300 43.3
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 3.8e-61 239.2 299 43.5
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.0e-61 238.8 300 44.7
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 5.0e-61 238.8 301 43.5
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 5.0e-61 238.8 300 44.3
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 5.0e-61 238.8 296 44.9
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 6.6e-61 238.4 300 43.0
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 6.6e-61 238.4 296 45.3
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 8.6e-61 238.0 295 48.1
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 8.6e-61 238.0 295 45.1
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 8.6e-61 238.0 296 49.7
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 8.6e-61 238.0 296 49.7
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 8.6e-61 238.0 299 44.8
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.1e-60 237.7 299 43.5
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 1.1e-60 237.7 300 43.3
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 1.1e-60 237.7 308 43.2
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 1.5e-60 237.3 300 44.7
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.5e-60 237.3 301 43.2
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 1.5e-60 237.3 300 44.0
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 1.5e-60 237.3 300 44.0
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 1.9e-60 236.9 300 44.7
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 1.9e-60 236.9 296 44.6
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 1.9e-60 236.9 296 44.9
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 2.5e-60 236.5 296 44.6
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 2.5e-60 236.5 296 44.9
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 3.3e-60 236.1 299 43.1
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.3e-60 236.1 299 42.5
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 3.3e-60 236.1 299 43.1
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 3.3e-60 236.1 303 42.9
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.3e-60 235.7 299 42.5
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 4.3e-60 235.7 300 45.3
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 4.3e-60 235.7 299 43.1
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 5.6e-60 235.3 296 43.9
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 5.6e-60 235.3 299 42.5
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 7.3e-60 235.0 301 43.2
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 9.5e-60 234.6 295 45.4
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 9.5e-60 234.6 300 43.3
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 9.5e-60 234.6 299 42.5
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 9.5e-60 234.6 300 44.0
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 9.5e-60 234.6 300 43.3
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 1.2e-59 234.2 300 43.0
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.2e-59 234.2 300 43.7
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.2e-59 234.2 300 42.3
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.2e-59 234.2 300 42.3
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 1.2e-59 234.2 300 43.3
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 1.6e-59 233.8 300 42.0
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 1.6e-59 233.8 300 42.3
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 1.6e-59 233.8 302 43.0
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.1e-59 233.4 300 43.3
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 2.1e-59 233.4 300 42.7
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 2.8e-59 233.0 295 45.4
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 2.8e-59 233.0 299 43.8
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 2.8e-59 233.0 299 42.1
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 2.8e-59 233.0 300 43.0
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 3.6e-59 232.6 300 42.7
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 4.7e-59 232.3 300 42.7
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 4.7e-59 232.3 300 43.0
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 4.7e-59 232.3 297 43.8
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 6.1e-59 231.9 294 43.5
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 8.0e-59 231.5 297 43.8
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 8.0e-59 231.5 300 42.0
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 1.0e-58 231.1 300 42.7
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.3e-58 229.9 300 43.0
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.3e-58 229.9 300 43.0
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 2.3e-58 229.9 301 43.5
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 2.3e-58 229.9 297 43.4
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.3e-58 229.9 297 43.4
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 2.3e-58 229.9 300 43.3
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.0e-58 229.6 297 43.4
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.0e-58 229.6 297 43.4
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.0e-58 229.6 297 43.4
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 3.0e-58 229.6 299 42.1
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.0e-58 229.2 297 43.4
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 4.0e-58 229.2 302 41.4
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 5.2e-58 228.8 302 41.4
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 1.5e-57 227.3 301 43.9
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 3.4e-57 226.1 300 42.0
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 2.2e-56 223.4 323 40.6
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 2.9e-56 223.0 307 42.0
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 4.9e-56 222.2 315 42.5
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 1.4e-55 220.7 269 42.8
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.4e-55 218.8 324 39.5
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 3.5e-54 216.1 291 41.9
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 6.6e-53 211.8 294 40.1
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 9.5e-52 208.0 298 41.6
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 1.2e-51 207.6 367 35.4
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 2.8e-51 206.5 298 40.6
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.2e-49 201.1 317 38.5
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 3.7e-48 196.1 280 40.0
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 8.3e-48 194.9 281 40.6
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.2e-46 191.0 251 44.2
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 2.0e-46 190.3 275 41.1
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 5.0e-45 185.7 274 39.4
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 9.5e-44 181.4 275 39.6
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 3.1e-42 176.4 264 39.0
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 1.9e-39 167.2 449 28.7
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 6.0e-38 162.2 234 39.3
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 3.6e-35 152.9 120 59.2
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 1.3e-32 144.4 266 35.0
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 8.7e-29 131.7 98 60.2
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 9.6e-28 128.3 240 32.5
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 2.1e-27 127.1 95 60.0
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 1.1e-26 124.8 211 37.9
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.9e-24 116.7 94 57.4
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.8e-24 116.3 93 54.8
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.8e-24 116.3 93 54.8
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 1.6e-22 110.9 264 29.9
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 1.6e-22 110.9 120 46.7
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 2.7e-22 110.2 280 29.6
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.6e-19 100.9 124 45.2
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.1e-18 98.2 124 43.5
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 3.1e-18 96.7 104 51.9
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.2e-17 94.7 180 37.2
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 5.8e-17 92.4 98 50.0
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 7.6e-17 92.0 98 50.0
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 7.6e-17 92.0 98 50.0
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 3.2e-15 86.7 70 62.9
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 9.3e-15 85.1 181 33.7
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 1.2e-14 84.7 123 38.2
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 8.7e-13 78.6 54 63.0
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 2.8e-11 73.6 70 48.6
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 2.4e-10 70.5 121 38.0
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 1.7e-08 64.3 44 61.4
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 8.4e-08 62.0 90 40.0
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 8.4e-08 62.0 90 40.0
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 1.4e-07 61.2 55 49.1
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 1.4e-07 61.2 44 63.6
Aqoxy5G04050 Aquilegia oxysepala HOM05D007112 ORTHO05D008930 5.5e-07 59.3 113 35.4
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.2e-06 58.2 40 60.0
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 4.6e-06 56.2 142 32.4
vmacro14688 Vaccinium macrocarpon HOM05D007112 ORTHO05D008930 4.6e-06 56.2 116 29.3
Hma1.2p1_1043F.1_g251280 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 6.0e-06 55.8 109 30.3
Hma1.2p1_1043F.1_g251290 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 6.0e-06 55.8 109 30.3
Sc24g0003360 Simmondsia chinensis HOM05D007112 ORTHO05D008930 6.0e-06 55.8 108 28.7
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 7.9e-06 55.5 47 53.2
AUR62028645 Chenopodium quinoa HOM05D007112 ORTHO05D008930 7.9e-06 55.5 109 28.4


User provided reference genes

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