Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003846 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 1.2e-77 293.1 148 100.0
Cre07.g339000 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 1.1e-25 120.6 125 46.4
CDE07G0375 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 2.3e-17 92.8 125 43.2
PRCOL_00002086 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 1.7e-15 86.7 154 35.1
BcaB01g01799 Brassica carinata HOM05D007052 ORTHO05D008871 2.9e-15 85.9 139 38.1
BcaC04g21282 Brassica carinata HOM05D007052 ORTHO05D008871 2.9e-15 85.9 139 38.1
C09p33580 Brassica napus HOM05D007052 ORTHO05D008871 2.9e-15 85.9 139 38.1
BolC9t56192H Brassica oleracea HOM05D007052 ORTHO05D008871 2.9e-15 85.9 139 38.1
Carub.0006s3216 Capsella rubella HOM05D007052 ORTHO05D008871 2.9e-15 85.9 139 38.1
CARHR253150 Cardamine hirsuta HOM05D007052 ORTHO05D008871 3.7e-15 85.5 139 38.1
A09p26390 Brassica napus HOM05D007052 ORTHO05D008871 4.9e-15 85.1 139 38.1
BraA09t38213Z Brassica rapa HOM05D007052 ORTHO05D008871 4.9e-15 85.1 139 38.1
PGR042G3505 Punica granatum HOM05D007052 ORTHO05D008871 6.4e-15 84.7 123 39.0
TAR627G0466 Trochodendron aralioides HOM05D007052 ORTHO05D008871 6.4e-15 84.7 123 39.0
Lj1A1235T90 Lonicera japonica HOM05D007052 ORTHO05D008871 8.3e-15 84.3 137 37.2
Pp3c25_6660 Physcomitrium patens HOM05D007052 ORTHO05D008871 1.1e-14 84.0 135 39.3
THA.LOC104812978 Tarenaya hassleriana HOM05D007052 ORTHO05D008871 1.1e-14 84.0 125 38.4
TWI38G1879 Tripterygium wilfordii HOM05D007052 ORTHO05D008871 1.1e-14 84.0 123 39.0
Cre01.g030350 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 1.4e-14 83.6 145 35.2
Ciclev10016958m.g Citrus clementina HOM05D007052 ORTHO05D008871 1.4e-14 83.6 123 38.2
Dinv20100 Davidia involucrata HOM05D007052 ORTHO05D008871 1.4e-14 83.6 123 39.0
MD05G1351600 Malus domestica HOM05D007052 ORTHO05D008871 1.4e-14 83.6 140 36.4
PSO541G4001 Papaver somniferum HOM05D007052 ORTHO05D008871 1.4e-14 83.6 138 39.1
Aa31LG9G9870 Aethionema arabicum HOM05D007052 ORTHO05D008871 1.9e-14 83.2 139 36.7
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 1.9e-14 83.2 139 36.7
Lsat_1_v5_gn_1_129560 Lactuca sativa HOM05D007052 ORTHO05D008871 1.9e-14 83.2 123 37.4
ATR0624G054 Amborella trichopoda HOM05D007052 ORTHO05D008871 2.4e-14 82.8 135 37.8
CANSAT56G3240 Cannabis sativa HOM05D007052 ORTHO05D008871 2.4e-14 82.8 141 36.9
Gohir.A10G011300 Gossypium hirsutum HOM05D007052 ORTHO05D008871 2.4e-14 82.8 125 38.4
Gorai.011G012000 Gossypium raimondii HOM05D007052 ORTHO05D008871 2.4e-14 82.8 125 38.4
MCO09G711 Micromonas commoda HOM05D007052 ORTHO05D008871 2.4e-14 82.8 136 34.6
PSO675G2240 Papaver somniferum HOM05D007052 ORTHO05D008871 2.4e-14 82.8 138 39.1
Sp6g04520 Schrenkiella parvula HOM05D007052 ORTHO05D008871 2.4e-14 82.8 139 37.4
MD10G1325900 Malus domestica HOM05D007052 ORTHO05D008871 3.2e-14 82.4 123 39.0
Sc05g0009410 Simmondsia chinensis HOM05D007052 ORTHO05D008871 3.2e-14 82.4 123 39.0
Aqoxy1G03011 Aquilegia oxysepala HOM05D007052 ORTHO05D008871 4.1e-14 82.0 137 38.0
AagrBONN_evm.TU.Sc2ySwM_117.3173 Anthoceros agrestis HOM05D007052 ORTHO05D008871 5.4e-14 81.6 123 36.6
AL6G47870 Arabidopsis lyrata HOM05D007052 ORTHO05D008871 5.4e-14 81.6 139 36.7
Haze_06850 Corylus avellana HOM05D007052 ORTHO05D008871 5.4e-14 81.6 137 35.8
ECA248G2484 Erigeron canadensis HOM05D007052 ORTHO05D008871 5.4e-14 81.6 137 35.8
Cfa000169 Carpinus fangiana HOM05D007052 ORTHO05D008871 7.1e-14 81.3 137 35.8
EL10Ac8g20122 Beta vulgaris HOM05D007052 ORTHO05D008871 9.2e-14 80.9 135 37.0
CSS0050367 Camellia sinensis var. sinensis HOM05D007052 ORTHO05D008871 9.2e-14 80.9 116 38.8
Gohir.A06G150600 Gossypium hirsutum HOM05D007052 ORTHO05D008871 9.2e-14 80.9 125 37.6
Actinidia11870 Actinidia chinensis HOM05D007052 ORTHO05D008871 1.2e-13 80.5 123 37.4
Duzib235G0934 Durio zibethinus HOM05D007052 ORTHO05D008871 1.2e-13 80.5 125 37.6
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 1.6e-13 80.1 127 37.0
Manes.17G028000 Manihot esculenta HOM05D007052 ORTHO05D008871 1.6e-13 80.1 123 36.6
Eucgr.E03993 Eucalyptus grandis HOM05D007052 ORTHO05D008871 2.7e-13 79.3 125 36.8
Glyma.15G111400 Glycine max HOM05D007052 ORTHO05D008871 2.7e-13 79.3 122 37.7
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 2.7e-13 79.3 135 34.8
SMO118G0387 Selaginella moellendorffii HOM05D007052 ORTHO05D008871 2.7e-13 79.3 116 34.5
Thecc.06G227100 Theobroma cacao HOM05D007052 ORTHO05D008871 2.7e-13 79.3 125 36.8
Cc09_g01290 Coffea canephora HOM05D007052 ORTHO05D008871 3.5e-13 79.0 138 34.8
SGA_v2.0_scaffold7G03781 Striga asiatica HOM05D007052 ORTHO05D008871 3.5e-13 79.0 127 37.8
MCO13G382 Micromonas commoda HOM05D007052 ORTHO05D008871 6.0e-13 78.2 161 30.4
Potri.011G010300 Populus trichocarpa HOM05D007052 ORTHO05D008871 6.0e-13 78.2 123 36.6
Gohir.D06G156800 Gossypium hirsutum HOM05D007052 ORTHO05D008871 7.8e-13 77.8 125 36.0
Lalb_Chr18g0056571 Lupinus albus HOM05D007052 ORTHO05D008871 7.8e-13 77.8 123 36.6
TPR.G13090 Trifolium pratense HOM05D007052 ORTHO05D008871 1.0e-12 77.4 138 36.2
Ca_00688_v3 Cicer arietinum L. HOM05D007052 ORTHO05D008871 1.3e-12 77.0 127 35.4
Glyma.09G007000 Glycine max HOM05D007052 ORTHO05D008871 1.3e-12 77.0 122 36.1
Phvul.006G146300 Phaseolus vulgaris HOM05D007052 ORTHO05D008871 1.3e-12 77.0 122 36.9
VMungo0540G2459 Vigna mungo HOM05D007052 ORTHO05D008871 1.3e-12 77.0 122 36.1
Rhsim02G0105300 Rhododendron simsii HOM05D007052 ORTHO05D008871 1.7e-12 76.6 129 36.4
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 1.7e-12 76.6 135 34.1
arahy.Tifrunner.gnm1.ann1.LNF63F Arachis hypogaea HOM05D007052 ORTHO05D008871 2.3e-12 76.3 122 36.1
arahy.Tifrunner.gnm1.ann1.MS5PCD Arachis hypogaea HOM05D007052 ORTHO05D008871 2.3e-12 76.3 122 36.1
Os08g0425200 Oryza sativa ssp. japonica HOM05D007052 ORTHO05D008871 2.3e-12 76.3 138 33.3
Sabra11G0007900 Salix brachista HOM05D007052 ORTHO05D008871 2.3e-12 76.3 123 36.6
GSVIVG01012660001 Vitis vinifera HOM05D007052 ORTHO05D008871 2.3e-12 76.3 116 37.1
vmacro15801 Vaccinium macrocarpon HOM05D007052 ORTHO05D008871 3.9e-12 75.5 129 35.7
Solyc02g081060.4 Solanum lycopersicum HOM05D007052 ORTHO05D008871 5.1e-12 75.1 122 36.1
COL.COLO4_31826 Corchorus olitorius HOM05D007052 ORTHO05D008871 1.1e-11 73.9 125 35.2
Sopen02g025730 Solanum pennellii HOM05D007052 ORTHO05D008871 1.1e-11 73.9 122 36.1
Migut.M01374 Erythranthe guttata HOM05D007052 ORTHO05D008871 4.3e-11 72.0 132 33.3
PRCOL_00004464 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 4.3e-11 72.0 140 33.6
CAN.G1014.43 Capsicum annuum HOM05D007052 ORTHO05D008871 5.6e-11 71.6 124 34.7
CsaV3_6G048750 Cucumis sativus L. HOM05D007052 ORTHO05D008871 7.3e-11 71.2 109 39.4
AUR62012751 Chenopodium quinoa HOM05D007052 ORTHO05D008871 9.5e-11 70.9 135 35.6
HanXRQChr01g0006501 Helianthus annuus HOM05D007052 ORTHO05D008871 9.5e-11 70.9 123 35.0
Hund23440 Selenicereus undatus HOM05D007052 ORTHO05D008871 2.8e-10 69.3 120 33.3
PRCOL_00003373 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 1.1e-09 67.4 136 32.4
PGSC0003DMG400016462 Solanum tuberosum HOM05D007052 ORTHO05D008871 1.1e-09 67.4 109 37.6
MELO3C007415.2 Cucumis melo HOM05D007052 ORTHO05D008871 2.4e-09 66.2 157 31.8
DCAR_024989 Daucus carota HOM05D007052 ORTHO05D008871 2.4e-09 66.2 121 33.9
ClCG01G021710 Citrullus lanatus HOM05D007052 ORTHO05D008871 3.1e-09 65.9 148 31.1
Hund21433 Selenicereus undatus HOM05D007052 ORTHO05D008871 5.2e-09 65.1 144 32.6
QL05p072067 Quercus lobata HOM05D007052 ORTHO05D008871 1.5e-08 63.5 175 29.1
Peaxi162Scf00178g00039 Petunia axillaris HOM05D007052 ORTHO05D008871 4.4e-08 62.0 121 29.8
Ah.09g234570 Amaranthus hybridus HOM05D007052 ORTHO05D008871 2.2e-07 59.7 125 32.0
Nn1g07250 Nelumbo nucifera HOM05D007052 ORTHO05D008871 2.9e-07 59.3 77 37.7
AUR62021907 Chenopodium quinoa HOM05D007052 ORTHO05D008871 8.4e-07 57.8 89 34.8


User provided reference genes

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