Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 3.6e-175 618.2 328 100.0
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 2.3e-57 226.9 297 42.8
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 4.4e-56 222.6 269 46.5
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 3.1e-54 216.5 293 44.7
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.6e-53 213.4 283 45.2
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 3.4e-53 213.0 295 43.1
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.7e-52 210.7 299 41.5
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 1.7e-52 210.7 281 43.8
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 3.8e-52 209.5 301 41.5
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 6.5e-52 208.8 302 41.4
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 1.4e-51 207.6 305 40.0
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 1.4e-51 207.6 285 42.5
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.9e-51 207.2 302 40.4
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 2.5e-51 206.8 277 43.7
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 3.2e-51 206.5 281 43.4
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 3.2e-51 206.5 285 41.8
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 5.5e-51 205.7 297 40.4
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 7.2e-51 205.3 289 42.2
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 1.2e-50 204.5 297 40.1
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.2e-50 204.5 281 43.1
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.6e-50 204.1 281 42.0
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.6e-50 204.1 281 43.1
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 2.1e-50 203.8 288 43.1
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 2.1e-50 203.8 300 41.7
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 2.1e-50 203.8 297 41.8
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 2.1e-50 203.8 285 42.5
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 3.6e-50 203.0 298 40.3
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 3.6e-50 203.0 301 40.5
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.6e-50 203.0 281 43.1
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 3.6e-50 203.0 265 43.0
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 4.7e-50 202.6 281 41.6
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 4.7e-50 202.6 304 42.1
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 4.7e-50 202.6 287 41.8
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 4.7e-50 202.6 303 40.6
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 4.7e-50 202.6 298 40.3
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 4.7e-50 202.6 298 42.6
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.7e-50 202.6 298 40.9
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 4.7e-50 202.6 281 43.1
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 4.7e-50 202.6 287 41.5
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 6.1e-50 202.2 301 39.9
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 6.1e-50 202.2 303 40.3
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 6.1e-50 202.2 281 42.3
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 6.1e-50 202.2 301 40.9
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 6.1e-50 202.2 299 42.8
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 6.1e-50 202.2 284 41.9
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 6.1e-50 202.2 300 40.7
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 6.1e-50 202.2 281 42.7
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 6.1e-50 202.2 273 43.6
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 7.9e-50 201.8 304 40.8
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 7.9e-50 201.8 299 42.8
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.0e-49 201.4 287 41.8
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 1.0e-49 201.4 299 39.8
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.0e-49 201.4 285 41.8
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 1.4e-49 201.1 303 40.3
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 1.4e-49 201.1 287 41.5
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 1.4e-49 201.1 284 42.3
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.8e-49 200.7 281 42.0
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 1.8e-49 200.7 287 41.5
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 1.8e-49 200.7 281 42.3
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 2.3e-49 200.3 297 41.1
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 2.3e-49 200.3 287 41.5
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 2.3e-49 200.3 281 41.3
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 2.3e-49 200.3 287 41.8
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 2.3e-49 200.3 297 40.7
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 2.3e-49 200.3 281 42.3
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 3.0e-49 199.9 301 39.5
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.0e-49 199.9 300 39.0
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 3.9e-49 199.5 273 42.5
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.9e-49 199.5 298 39.6
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.9e-49 199.5 315 38.4
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 3.9e-49 199.5 284 42.3
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 3.9e-49 199.5 298 39.9
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 5.2e-49 199.1 301 38.9
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 6.7e-49 198.7 295 41.0
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 6.7e-49 198.7 276 42.8
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 8.8e-49 198.4 294 40.8
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 8.8e-49 198.4 276 41.7
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 8.8e-49 198.4 295 41.4
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 8.8e-49 198.4 281 41.6
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 8.8e-49 198.4 281 41.6
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 8.8e-49 198.4 293 41.0
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.1e-48 198.0 301 41.2
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 1.5e-48 197.6 285 41.4
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.5e-48 197.6 285 41.1
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 2.0e-48 197.2 298 41.3
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 2.0e-48 197.2 303 39.9
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 2.6e-48 196.8 297 39.7
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 2.6e-48 196.8 281 41.3
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 3.3e-48 196.4 273 41.8
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 3.3e-48 196.4 281 42.3
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 3.3e-48 196.4 285 41.1
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 4.4e-48 196.1 281 41.3
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 4.4e-48 196.1 297 39.1
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 4.4e-48 196.1 281 41.6
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 5.7e-48 195.7 281 42.3
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 5.7e-48 195.7 296 39.5
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 5.7e-48 195.7 280 41.8
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 5.7e-48 195.7 284 40.5
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 7.4e-48 195.3 301 40.2
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 7.4e-48 195.3 287 40.4
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 7.4e-48 195.3 281 40.6
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 7.4e-48 195.3 273 41.0
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 9.7e-48 194.9 289 41.2
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 9.7e-48 194.9 285 40.7
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 1.3e-47 194.5 281 40.6
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.3e-47 194.5 297 39.1
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 1.3e-47 194.5 285 40.7
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.7e-47 194.1 281 40.9
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.7e-47 194.1 281 40.9
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.7e-47 194.1 281 41.6
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 1.7e-47 194.1 285 40.7
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 2.2e-47 193.7 273 41.0
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.8e-47 193.4 244 47.1
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 4.8e-47 192.6 285 40.7
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 6.3e-47 192.2 281 41.3
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 6.3e-47 192.2 248 42.7
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.4e-46 191.0 301 38.9
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 3.5e-45 186.4 304 40.1
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 4.5e-45 186.0 253 41.5
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 3.8e-44 183.0 224 45.5
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.5e-43 180.3 304 37.8
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 3.2e-43 179.9 298 38.3
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 9.4e-43 178.3 323 37.5
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 1.2e-42 177.9 303 37.6
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 2.7e-42 176.8 299 39.1
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 8.0e-42 175.3 285 38.9
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 3.0e-41 173.3 340 35.6
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 3.7e-39 166.4 214 43.9
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 6.3e-39 165.6 336 33.6
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 4.1e-38 162.9 297 36.7
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 3.8e-36 156.4 213 44.1
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 1.5e-35 154.5 198 43.9
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.2e-34 151.4 195 44.1
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 2.7e-34 150.2 284 36.3
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.7e-34 150.2 212 42.5
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 8.0e-34 148.7 192 44.8
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 3.5e-29 133.3 153 47.7
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.5e-29 133.3 146 49.3
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 7.7e-29 132.1 150 46.7
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.8e-26 123.6 240 34.2
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.7e-21 107.1 298 29.5
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 5.6e-19 99.4 222 33.8
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 2.1e-18 97.4 111 46.8
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.0e-13 80.9 506 22.1
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.7e-13 80.5 83 50.6
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 3.0e-12 77.0 146 33.6
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.8e-10 70.5 161 32.3
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 1.3e-07 61.6 71 46.5
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 5.4e-06 56.2 83 41.0


User provided reference genes

Program Settings