Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 0.0e+00 1325.8 756 100.0
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 2.7e-61 241.1 323 45.8
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 8.2e-58 229.6 346 43.6
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 5.9e-56 223.4 312 42.3
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 7.7e-56 223.0 312 43.3
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 7.7e-56 223.0 312 42.6
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 5.0e-55 220.3 316 41.8
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 6.5e-55 219.9 316 41.5
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 8.5e-55 219.5 314 42.4
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 1.9e-54 218.4 301 42.9
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 1.9e-54 218.4 324 41.7
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 3.2e-54 217.6 318 42.1
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 3.2e-54 217.6 316 41.5
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 7.2e-54 216.5 319 43.6
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 2.7e-53 214.5 321 41.1
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 3.6e-53 214.2 316 41.1
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 4.7e-53 213.8 316 41.8
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 4.7e-53 213.8 323 40.2
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 6.1e-53 213.4 316 43.0
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 6.1e-53 213.4 314 42.7
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 6.1e-53 213.4 314 42.7
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 1.0e-52 212.6 316 42.4
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 1.0e-52 212.6 307 41.4
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.0e-52 212.6 320 42.8
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.0e-52 212.6 320 40.6
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 1.0e-52 212.6 316 42.1
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 1.4e-52 212.2 316 42.4
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.4e-52 212.2 316 42.4
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 1.8e-52 211.8 316 42.7
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.8e-52 211.8 316 41.8
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 2.3e-52 211.5 312 42.0
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 2.3e-52 211.5 316 41.5
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 3.9e-52 210.7 316 41.5
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 6.7e-52 209.9 323 40.6
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 8.8e-52 209.5 314 42.0
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 8.8e-52 209.5 317 42.3
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.1e-51 209.1 322 41.9
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.5e-51 208.8 322 41.3
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.5e-51 208.8 323 41.5
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 2.0e-51 208.4 324 41.7
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.0e-51 208.4 323 39.6
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.6e-51 208.0 314 41.7
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 2.6e-51 208.0 315 40.0
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 2.6e-51 208.0 321 40.8
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 3.3e-51 207.6 312 41.3
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 4.4e-51 207.2 322 41.6
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 4.4e-51 207.2 316 40.8
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 5.7e-51 206.8 311 41.8
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 7.4e-51 206.5 316 40.5
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 1.3e-50 205.7 320 40.6
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 1.7e-50 205.3 324 39.5
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 2.2e-50 204.9 330 39.7
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 2.2e-50 204.9 318 40.3
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 2.2e-50 204.9 318 40.3
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 2.8e-50 204.5 316 39.6
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 3.7e-50 204.1 316 39.9
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 4.8e-50 203.8 321 40.2
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 4.8e-50 203.8 312 40.7
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 4.8e-50 203.8 306 42.2
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 6.3e-50 203.4 318 40.9
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 6.3e-50 203.4 327 40.1
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 8.2e-50 203.0 312 40.7
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 8.2e-50 203.0 317 41.3
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 1.8e-49 201.8 327 40.4
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 3.1e-49 201.1 309 40.8
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 3.1e-49 201.1 260 45.8
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 9.1e-49 199.5 318 41.2
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.2e-48 199.1 311 42.1
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 1.6e-48 198.7 317 39.7
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 2.0e-48 198.4 316 40.2
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 2.6e-48 198.0 313 39.6
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 4.5e-48 197.2 316 40.2
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 7.7e-48 196.4 321 39.9
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 7.7e-48 196.4 318 39.6
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 7.7e-48 196.4 315 40.3
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 7.7e-48 196.4 393 36.9
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.3e-47 195.7 273 42.9
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.3e-47 195.7 256 44.5
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.3e-47 195.7 256 44.5
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 1.7e-47 195.3 316 38.9
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 2.2e-47 194.9 347 37.2
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 2.2e-47 194.9 220 47.7
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 1.5e-46 192.2 323 40.2
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 1.9e-46 191.8 322 39.1
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 5.5e-46 190.3 320 38.4
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 4.7e-45 187.2 316 37.7
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 4.7e-45 187.2 312 39.1
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 5.2e-44 183.7 261 43.7
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 1.5e-43 182.2 312 39.1
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 1.5e-43 182.2 237 45.6
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 4.4e-43 180.6 198 47.5
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 5.7e-43 180.3 199 47.7
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 9.7e-43 179.5 316 37.7
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 9.7e-43 179.5 251 41.8
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 2.2e-42 178.3 315 37.1
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 2.8e-42 177.9 284 40.5
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 4.8e-42 177.2 352 35.8
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 4.5e-40 170.6 295 38.6
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 1.3e-39 169.1 318 37.4
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.7e-39 168.7 259 40.2
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.5e-39 166.8 187 46.0
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.1e-38 166.0 256 40.6
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 2.5e-38 164.9 322 36.6
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 4.7e-37 160.6 322 35.4
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.3e-36 158.3 298 37.2
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.8e-36 156.8 197 42.1
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 5.7e-35 153.7 311 36.3
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 1.7e-34 152.1 314 35.4
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.8e-33 148.7 317 35.3
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 7.7e-32 143.3 317 34.4
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 9.8e-27 126.3 101 57.4
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 4.7e-21 107.5 322 30.1
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.7e-18 97.8 134 41.8
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.1e-17 94.4 152 38.8
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.9e-16 90.5 134 39.6
Cre10.g440900 Chlamydomonas reinhardtii HOM05D004387 ORTHO05D005218 1.2e-13 82.8 326 31.9
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.8e-12 79.0 344 27.0
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.1e-12 78.2 93 45.2
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.1e-09 69.7 155 32.9
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.9e-09 68.9 124 37.1
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 4.6e-08 64.3 99 36.4
Medtr1g007060 Medicago truncatula HOM05D004387 ORTHO05D005218 1.5e-06 59.3 322 25.2
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 1.9e-06 58.9 75 38.7
Glyma.18G267600 Glycine max HOM05D004387 ORTHO05D005218 2.5e-06 58.5 191 27.7
Psat6g037480 Pisum sativum HOM05D004387 ORTHO05D005218 2.5e-06 58.5 322 25.5
VMungo0331G1303 Vigna mungo HOM05D004387 ORTHO05D005218 5.6e-06 57.4 325 25.5
TPR.G24500 Trifolium pratense HOM05D004387 ORTHO05D005218 7.3e-06 57.0 314 25.5
Lalb_Chr20g0110501 Lupinus albus HOM05D004387 ORTHO05D005218 9.5e-06 56.6 322 25.5
MBI11_g09466_MAGBIO Magnolia biondii HOM05D004387 ORTHO05D005218 9.5e-06 56.6 252 26.6


User provided reference genes

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