Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 2.6e-39 164.9 79 100.0
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.5e-12 74.7 54 64.8
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.5e-12 74.7 54 64.8
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.5e-12 74.7 54 64.8
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 1.3e-11 72.8 54 61.1
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 2.3e-11 72.0 54 61.1
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 2.3e-11 72.0 56 58.9
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 2.3e-11 72.0 61 57.4
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 3.9e-11 71.2 56 58.9
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 3.9e-11 71.2 56 58.9
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 3.9e-11 71.2 56 58.9
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 3.9e-11 71.2 56 58.9
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 3.9e-11 71.2 56 58.9
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 5.1e-11 70.9 56 58.9
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 5.1e-11 70.9 56 58.9
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 8.7e-11 70.1 56 57.1
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 1.1e-10 69.7 54 61.1
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 1.1e-10 69.7 54 61.1
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 1.5e-10 69.3 56 57.1
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 1.5e-10 69.3 56 57.1
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 1.5e-10 69.3 65 56.9
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 1.5e-10 69.3 56 58.9
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.5e-10 69.3 54 59.3
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 1.9e-10 68.9 56 57.1
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.9e-10 68.9 56 58.9
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 1.9e-10 68.9 56 58.9
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.5e-10 68.6 56 57.1
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.5e-10 68.6 56 57.1
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 2.5e-10 68.6 56 57.1
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.5e-10 68.6 54 59.3
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 3.3e-10 68.2 56 57.1
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 3.3e-10 68.2 56 57.1
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 3.3e-10 68.2 56 57.1
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 3.3e-10 68.2 56 55.4
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 3.3e-10 68.2 56 57.1
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 3.3e-10 68.2 54 61.1
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 3.3e-10 68.2 68 51.5
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 4.3e-10 67.8 56 57.1
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 4.3e-10 67.8 56 55.4
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 4.3e-10 67.8 56 57.1
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 4.3e-10 67.8 52 63.5
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 4.3e-10 67.8 56 57.1
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 4.3e-10 67.8 56 57.1
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 4.3e-10 67.8 56 57.1
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 4.3e-10 67.8 54 57.4
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 5.6e-10 67.4 68 52.9
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 5.6e-10 67.4 56 57.1
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 5.6e-10 67.4 56 57.1
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 5.6e-10 67.4 56 55.4
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 5.6e-10 67.4 56 57.1
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 5.6e-10 67.4 54 59.3
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 5.6e-10 67.4 56 55.4
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 5.6e-10 67.4 56 55.4
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 5.6e-10 67.4 56 57.1
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 5.6e-10 67.4 56 57.1
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 5.6e-10 67.4 54 55.6
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 5.6e-10 67.4 54 59.3
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 7.4e-10 67.0 56 55.4
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 7.4e-10 67.0 56 55.4
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 7.4e-10 67.0 56 57.1
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 7.4e-10 67.0 56 57.1
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 7.4e-10 67.0 56 57.1
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 9.6e-10 66.6 56 57.1
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 9.6e-10 66.6 72 48.6
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 9.6e-10 66.6 72 48.6
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 9.6e-10 66.6 56 57.1
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 9.6e-10 66.6 56 55.4
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 1.3e-09 66.2 56 55.4
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 1.3e-09 66.2 56 55.4
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 1.3e-09 66.2 56 55.4
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 1.3e-09 66.2 56 55.4
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 1.3e-09 66.2 56 55.4
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 1.3e-09 66.2 56 55.4
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.3e-09 66.2 56 57.1
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.3e-09 66.2 56 57.1
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 1.6e-09 65.9 56 55.4
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 1.6e-09 65.9 56 55.4
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 1.6e-09 65.9 56 55.4
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 2.1e-09 65.5 54 55.6
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.1e-09 65.5 63 55.6
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 2.1e-09 65.5 56 55.4
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 2.8e-09 65.1 56 55.4
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 2.8e-09 65.1 56 53.6
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 2.8e-09 65.1 68 51.5
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.8e-09 65.1 56 55.4
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.8e-09 65.1 56 55.4
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 2.8e-09 65.1 56 55.4
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 2.8e-09 65.1 52 59.6
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 2.8e-09 65.1 56 55.4
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 2.8e-09 65.1 56 55.4
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 2.8e-09 65.1 56 55.4
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 3.7e-09 64.7 54 55.6
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 3.7e-09 64.7 56 55.4
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 3.7e-09 64.7 56 55.4
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 3.7e-09 64.7 56 55.4
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 3.7e-09 64.7 56 55.4
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.7e-09 64.7 72 50.0
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 3.7e-09 64.7 54 57.4
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 3.7e-09 64.7 54 57.4
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 3.7e-09 64.7 54 57.4
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 3.7e-09 64.7 54 57.4
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 3.7e-09 64.7 56 55.4
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 4.8e-09 64.3 56 55.4
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 4.8e-09 64.3 56 55.4
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 4.8e-09 64.3 56 53.6
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 6.2e-09 63.9 56 53.6
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 6.2e-09 63.9 54 51.9
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 6.2e-09 63.9 56 53.6
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 8.1e-09 63.5 56 53.6
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 8.1e-09 63.5 54 55.6
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 1.1e-08 63.2 52 55.8
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.1e-08 63.2 54 53.7
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 1.1e-08 63.2 56 53.6
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 1.8e-08 62.4 49 61.2
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.8e-08 62.4 56 53.6
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.8e-08 62.4 56 53.6
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 2.4e-08 62.0 56 53.6
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.4e-08 62.0 56 53.6
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.4e-08 62.0 56 53.6
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 2.4e-08 62.0 56 53.6
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 3.1e-08 61.6 72 48.6
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.1e-08 61.6 72 47.2
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.1e-08 61.6 72 48.6
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 3.1e-08 61.6 56 51.8
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 3.1e-08 61.6 56 51.8
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 4.0e-08 61.2 56 53.6
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 4.0e-08 61.2 52 55.8
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 5.3e-08 60.8 54 53.7
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 6.9e-08 60.5 56 51.8
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 6.9e-08 60.5 56 51.8
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 9.0e-08 60.1 46 60.9
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 9.0e-08 60.1 46 60.9
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 4.5e-07 57.8 54 50.0
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 5.8e-07 57.4 61 49.2
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 5.8e-07 57.4 46 58.7
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 5.8e-07 57.4 54 50.0
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.3e-06 56.2 46 58.7
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.3e-06 56.2 54 48.1
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.3e-06 56.2 46 58.7
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 6.4e-06 53.9 48 54.2
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 8.4e-06 53.5 46 54.3
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 8.4e-06 53.5 48 54.2


User provided reference genes

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