Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 7.4e-45 183.3 83 100.0
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 2.2e-17 92.0 70 54.3
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 7.2e-16 87.0 62 54.8
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 9.4e-16 86.7 61 55.7
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 2.3e-14 82.0 66 54.5
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.0e-14 81.6 81 46.9
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.0e-14 81.6 73 50.7
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 3.0e-14 81.6 73 50.7
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 3.0e-14 81.6 65 53.8
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 3.0e-14 81.6 65 55.4
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 4.0e-14 81.3 65 55.4
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 4.0e-14 81.3 65 55.4
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 4.0e-14 81.3 65 55.4
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 4.0e-14 81.3 66 53.0
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 5.2e-14 80.9 65 55.4
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 6.8e-14 80.5 65 53.8
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 6.8e-14 80.5 65 55.4
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 6.8e-14 80.5 65 53.8
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 8.8e-14 80.1 66 56.1
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 8.8e-14 80.1 66 56.1
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 8.8e-14 80.1 65 53.8
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 8.8e-14 80.1 73 49.3
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 8.8e-14 80.1 65 55.4
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 8.8e-14 80.1 73 49.3
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 8.8e-14 80.1 65 53.8
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 8.8e-14 80.1 65 53.8
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 8.8e-14 80.1 64 53.1
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 8.8e-14 80.1 65 55.4
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 8.8e-14 80.1 73 49.3
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 8.8e-14 80.1 65 55.4
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.2e-13 79.7 65 52.3
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 1.2e-13 79.7 73 49.3
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.2e-13 79.7 73 49.3
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.2e-13 79.7 73 49.3
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.2e-13 79.7 65 55.4
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 1.5e-13 79.3 66 53.0
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 1.5e-13 79.3 65 53.8
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.5e-13 79.3 67 52.2
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 2.0e-13 79.0 65 53.8
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 2.0e-13 79.0 65 53.8
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 2.0e-13 79.0 65 53.8
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 2.0e-13 79.0 66 54.5
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 2.0e-13 79.0 66 53.0
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 2.0e-13 79.0 65 53.8
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 2.0e-13 79.0 65 53.8
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 2.0e-13 79.0 66 53.0
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 2.6e-13 78.6 65 55.4
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 2.6e-13 78.6 65 52.3
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 2.6e-13 78.6 65 53.8
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 2.6e-13 78.6 65 53.8
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 3.4e-13 78.2 65 52.3
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 3.4e-13 78.2 65 53.8
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 4.4e-13 77.8 67 52.2
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.4e-13 77.8 62 54.8
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.4e-13 77.8 62 54.8
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.4e-13 77.8 62 54.8
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.4e-13 77.8 62 54.8
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 4.4e-13 77.8 65 52.3
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 5.7e-13 77.4 66 53.0
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 5.7e-13 77.4 78 47.4
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 7.5e-13 77.0 65 44.6
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 7.5e-13 77.0 65 52.3
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 7.5e-13 77.0 65 53.8
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 9.8e-13 76.6 69 50.7
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 9.8e-13 76.6 69 50.7
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 9.8e-13 76.6 65 52.3
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.3e-12 76.3 65 50.8
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 1.3e-12 76.3 61 55.7
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.7e-12 75.9 61 54.1
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 1.7e-12 75.9 65 52.3
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.7e-12 75.9 65 52.3
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.7e-12 75.9 65 52.3
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.7e-12 75.9 65 52.3
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 2.2e-12 75.5 65 52.3
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 2.8e-12 75.1 61 54.1
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 2.8e-12 75.1 61 54.1
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 2.8e-12 75.1 61 54.1
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 2.8e-12 75.1 61 54.1
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 2.8e-12 75.1 65 52.3
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 3.7e-12 74.7 61 54.1
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 3.7e-12 74.7 65 53.8
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 3.7e-12 74.7 65 52.3
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 3.7e-12 74.7 61 54.1
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 3.7e-12 74.7 61 54.1
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 3.7e-12 74.7 61 54.1
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 3.7e-12 74.7 61 54.1
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 4.8e-12 74.3 61 54.1
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 4.8e-12 74.3 61 54.1
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 4.8e-12 74.3 61 54.1
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 4.8e-12 74.3 61 54.1
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 4.8e-12 74.3 61 54.1
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 4.8e-12 74.3 65 50.8
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 4.8e-12 74.3 65 50.8
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 4.8e-12 74.3 65 50.8
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 6.3e-12 73.9 68 51.5
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 6.3e-12 73.9 62 53.2
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 8.3e-12 73.6 65 49.2
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 1.1e-11 73.2 61 52.5
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.1e-11 73.2 65 52.3
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 1.1e-11 73.2 65 50.8
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 1.1e-11 73.2 65 50.8
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 1.1e-11 73.2 65 50.8
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.4e-11 72.8 61 52.5
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.4e-11 72.8 65 52.3
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.4e-11 72.8 65 50.8
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 1.8e-11 72.4 67 50.7
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 1.8e-11 72.4 60 53.3
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 1.8e-11 72.4 60 53.3
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 1.8e-11 72.4 66 50.0
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 1.8e-11 72.4 60 53.3
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 2.4e-11 72.0 61 54.1
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.4e-11 72.0 60 55.0
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 5.4e-11 70.9 61 50.8
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 1.2e-10 69.7 65 47.7
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.6e-10 69.3 61 50.8
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 1.5e-08 62.8 85 41.2
Cre17.g725400 Chlamydomonas reinhardtii HOM05D005277 ORTHO05D006319 6.1e-07 57.4 65 41.5


User provided reference genes

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